Gvermi7082.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7082.t1
Unique NameGvermi7082.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1554566..1555345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SDL3
PFAMsRhomboid
Max annot lvl3041|Chlorophyta
KEGG koko:K09651
Evalue3.71e-33
EggNOG OGsKOG2632@1|root,KOG2632@2759|Eukaryota,37KKI@33090|Viridiplantae,34IJ1@3041|Chlorophyta
DescriptionRhomboid family
COG categoryS
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7082Gvermi7082Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1554566..1555345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7082.t1.stop1Gvermi7082.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1554566..1554568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7082.t1.CDS1Gvermi7082.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1554566..1555345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7082.t1.exon1Gvermi7082.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1554566..1555345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7082.t1.start1Gvermi7082.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1555343..1555345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7082.t1Gvermi7082.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1554566..1555345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7082.t1 ID=Gvermi7082.t1|Name=Gvermi7082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=260bp
MNRRRTYRPTIESTYAMGLAYSLLGQVAGLERKPPVTLFFLALNAAIFLL
PYIPAFIDVPPEFNGVYEEALYWTTIRRACLIPARVVLYGGELYRIVLST
LVHADSLHLMYNMMSFLYKGAVLEALLGSLHMFVIIVYLMLSSSLMYVLT
AIIAAESNVNSSIMYNCCVGFSGVIFGLKVLVNSDEAYASHAENIFNFSL
PKETVWAELILASLSAPGVSFLGHLCGIMAGYVYLYIARATGFMKQGRTS
ARRGGWHND*
back to top

spliced messenger RNA

>Gvermi7082.t1 ID=Gvermi7082.t1|Name=Gvermi7082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=780bp|location=Sequence derived from alignment at ScGOVlb_24229:1554566..1555345- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGTCGCAGAACTTACCGACCAACGATCGAGAGCACCTACGCAAT
GGGCCTTGCGTATAGTTTGCTCGGTCAAGTAGCTGGATTGGAACGTAAAC
CGCCAGTTACCTTATTCTTCCTTGCTTTAAACGCTGCGATTTTTCTTTTA
CCGTACATTCCTGCTTTCATTGATGTTCCACCAGAGTTTAATGGGGTTTA
TGAAGAAGCGCTTTACTGGACTACAATTCGCAGGGCATGTTTGATTCCGG
CCAGGGTTGTGTTGTACGGAGGAGAATTATATCGTATTGTCCTTTCCACG
CTAGTTCACGCAGATAGTTTGCATCTGATGTACAACATGATGAGCTTTCT
ATACAAGGGGGCTGTTTTGGAAGCACTACTTGGTTCTCTTCATATGTTTG
TTATAATCGTTTATCTTATGTTATCTTCATCCCTCATGTATGTTCTTACC
GCCATTATTGCAGCCGAAAGCAATGTTAATTCTTCAATTATGTACAATTG
TTGTGTTGGGTTTTCTGGCGTAATCTTTGGGTTGAAGGTCTTAGTAAATT
CTGATGAAGCTTACGCAAGCCATGCCGAGAATATATTTAATTTCAGTCTC
CCAAAAGAGACTGTTTGGGCTGAGTTAATTCTAGCCTCTCTTTCTGCCCC
AGGAGTTAGTTTTCTAGGGCATTTGTGTGGAATAATGGCTGGCTATGTCT
ATCTCTACATCGCGAGGGCTACTGGTTTCATGAAGCAAGGACGAACTTCT
GCCAGAAGAGGAGGATGGCACAACGACTAA
back to top

protein sequence of Gvermi7082.t1

>Gvermi7082.t1 ID=Gvermi7082.t1|Name=Gvermi7082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=260bp
MNRRRTYRPTIESTYAMGLAYSLLGQVAGLERKPPVTLFFLALNAAIFLL
PYIPAFIDVPPEFNGVYEEALYWTTIRRACLIPARVVLYGGELYRIVLST
LVHADSLHLMYNMMSFLYKGAVLEALLGSLHMFVIIVYLMLSSSLMYVLT
AIIAAESNVNSSIMYNCCVGFSGVIFGLKVLVNSDEAYASHAENIFNFSL
PKETVWAELILASLSAPGVSFLGHLCGIMAGYVYLYIARATGFMKQGRTS
ARRGGWHND*
back to top

mRNA from alignment at ScGOVlb_24229:1554566..1555345-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7082.t1 ID=Gvermi7082.t1|Name=Gvermi7082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=780bp|location=Sequence derived from alignment at ScGOVlb_24229:1554566..1555345- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGTCGCAGAACTTACCGACCAACGATCGAGAGCACCTACGCAAT
GGGCCTTGCGTATAGTTTGCTCGGTCAAGTAGCTGGATTGGAACGTAAAC
CGCCAGTTACCTTATTCTTCCTTGCTTTAAACGCTGCGATTTTTCTTTTA
CCGTACATTCCTGCTTTCATTGATGTTCCACCAGAGTTTAATGGGGTTTA
TGAAGAAGCGCTTTACTGGACTACAATTCGCAGGGCATGTTTGATTCCGG
CCAGGGTTGTGTTGTACGGAGGAGAATTATATCGTATTGTCCTTTCCACG
CTAGTTCACGCAGATAGTTTGCATCTGATGTACAACATGATGAGCTTTCT
ATACAAGGGGGCTGTTTTGGAAGCACTACTTGGTTCTCTTCATATGTTTG
TTATAATCGTTTATCTTATGTTATCTTCATCCCTCATGTATGTTCTTACC
GCCATTATTGCAGCCGAAAGCAATGTTAATTCTTCAATTATGTACAATTG
TTGTGTTGGGTTTTCTGGCGTAATCTTTGGGTTGAAGGTCTTAGTAAATT
CTGATGAAGCTTACGCAAGCCATGCCGAGAATATATTTAATTTCAGTCTC
CCAAAAGAGACTGTTTGGGCTGAGTTAATTCTAGCCTCTCTTTCTGCCCC
AGGAGTTAGTTTTCTAGGGCATTTGTGTGGAATAATGGCTGGCTATGTCT
ATCTCTACATCGCGAGGGCTACTGGTTTCATGAAGCAAGGACGAACTTCT
GCCAGAAGAGGAGGATGGCACAACGACTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1554566..1555345-

>Gvermi7082.t1 ID=Gvermi7082.t1|Name=Gvermi7082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=780bp|location=Sequence derived from alignment at ScGOVlb_24229:1554566..1555345- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGTCGCAGAACTTACCGACCAACGATCGAGAGCACCTACGCAAT
GGGCCTTGCGTATAGTTTGCTCGGTCAAGTAGCTGGATTGGAACGTAAAC
CGCCAGTTACCTTATTCTTCCTTGCTTTAAACGCTGCGATTTTTCTTTTA
CCGTACATTCCTGCTTTCATTGATGTTCCACCAGAGTTTAATGGGGTTTA
TGAAGAAGCGCTTTACTGGACTACAATTCGCAGGGCATGTTTGATTCCGG
CCAGGGTTGTGTTGTACGGAGGAGAATTATATCGTATTGTCCTTTCCACG
CTAGTTCACGCAGATAGTTTGCATCTGATGTACAACATGATGAGCTTTCT
ATACAAGGGGGCTGTTTTGGAAGCACTACTTGGTTCTCTTCATATGTTTG
TTATAATCGTTTATCTTATGTTATCTTCATCCCTCATGTATGTTCTTACC
GCCATTATTGCAGCCGAAAGCAATGTTAATTCTTCAATTATGTACAATTG
TTGTGTTGGGTTTTCTGGCGTAATCTTTGGGTTGAAGGTCTTAGTAAATT
CTGATGAAGCTTACGCAAGCCATGCCGAGAATATATTTAATTTCAGTCTC
CCAAAAGAGACTGTTTGGGCTGAGTTAATTCTAGCCTCTCTTTCTGCCCC
AGGAGTTAGTTTTCTAGGGCATTTGTGTGGAATAATGGCTGGCTATGTCT
ATCTCTACATCGCGAGGGCTACTGGTTTCATGAAGCAAGGACGAACTTCT
GCCAGAAGAGGAGGATGGCACAACGACTAA
back to top