Gvermi7074.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7074.t1
Unique NameGvermi7074.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1481476..1482633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7074Gvermi7074Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1481476..1482633 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7074.t1.start1Gvermi7074.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1481476..1481478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7074.t1.CDS1Gvermi7074.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1481476..1482633 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7074.t1.exon1Gvermi7074.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1481476..1482633 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7074.t1.stop1Gvermi7074.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1482631..1482633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7074.t1Gvermi7074.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1481476..1482633 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7074.t1 ID=Gvermi7074.t1|Name=Gvermi7074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=386bp
MEEHHIDHQVKDQPEHQPEHQHPPEHQPEHQPEHQPERQPEHQPEHRPEH
QPEHRPEHQPEHQQEHQLDHQSEHQLHPHQSEHQSEQDSEHQFDHQPDHQ
PDHQPDHQPDHQPDHQPDHPLDHQLDHQLEHQSEHKPDHQPEHQPEHHPE
HQPGHQPDHQLDHQPEHQPEYQPEHPTEHRLEHQSVHHMEQSHTRQHSDQ
PQPAQQQQLLEQNLEGERDGLQRELPLRKSGSNRRKRYRCGYCHELGHNQ
KTCPLRPPHVPTSTSRSHTYKTSLPNLPQLHDLAAKLAEDLGRVFLEIAP
TPPGEGWQPSQRISFDVVLEAANKGVMHANQSVVDANTDDEFESSLEHLQ
SAVHLMEKVATLIYKSAIIARIINRCQEDPALSNE*
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spliced messenger RNA

>Gvermi7074.t1 ID=Gvermi7074.t1|Name=Gvermi7074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24229:1481476..1482633+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGCATCATATCGACCATCAAGTCAAGGACCAACCTGAGCATCA
ACCCGAACACCAACACCCACCCGAACACCAACCCGAACACCAACCCGAAC
ACCAACCCGAACGCCAACCCGAACACCAACCCGAGCACCGACCTGAGCAC
CAACCCGAGCACCGACCTGAGCACCAACCCGAGCACCAACAAGAACACCA
ACTCGACCACCAGTCCGAACACCAACTCCACCCCCACCAGTCCGAACATC
AGTCCGAACAGGATTCCGAACACCAGTTCGACCACCAGCCCGACCACCAG
CCCGACCACCAGCCCGACCACCAGCCCGACCACCAGCCCGACCACCAGCC
CGACCACCCGCTCGACCACCAGCTGGACCACCAGCTCGAGCATCAGTCCG
AGCACAAACCCGACCACCAGCCCGAACACCAGCCGGAGCACCACCCCGAG
CATCAACCCGGGCATCAACCCGATCATCAACTCGATCATCAGCCTGAGCA
TCAGCCCGAGTATCAGCCCGAGCATCCGACCGAGCACCGGCTGGAGCACC
AGTCTGTGCATCATATGGAGCAGTCGCATACACGGCAACACTCAGACCAA
CCGCAACCTGCGCAACAGCAACAGCTTCTTGAGCAGAACTTGGAAGGCGA
AAGGGATGGCCTGCAACGAGAACTGCCATTGAGGAAATCCGGATCTAACC
GACGAAAGCGCTATCGCTGCGGATATTGCCACGAGCTAGGTCACAATCAG
AAGACCTGCCCGCTCCGACCTCCACATGTGCCAACATCCACGTCCCGATC
ACATACGTACAAGACCTCACTGCCGAATCTGCCTCAGTTACATGATCTCG
CCGCCAAACTCGCCGAAGATCTGGGAAGGGTGTTCCTTGAGATAGCGCCG
ACGCCCCCCGGGGAGGGCTGGCAGCCATCACAGAGAATTTCGTTCGATGT
TGTCCTTGAGGCGGCAAACAAGGGGGTCATGCACGCCAATCAATCTGTGG
TTGATGCCAACACTGATGACGAATTTGAGAGTTCCCTGGAACATTTGCAG
TCAGCTGTGCATCTCATGGAAAAGGTCGCAACCCTTATATACAAGAGCGC
TATAATTGCCCGTATCATAAATCGTTGCCAGGAAGATCCCGCCTTAAGTA
ACGAATGA
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protein sequence of Gvermi7074.t1

>Gvermi7074.t1 ID=Gvermi7074.t1|Name=Gvermi7074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=386bp
MEEHHIDHQVKDQPEHQPEHQHPPEHQPEHQPEHQPERQPEHQPEHRPEH
QPEHRPEHQPEHQQEHQLDHQSEHQLHPHQSEHQSEQDSEHQFDHQPDHQ
PDHQPDHQPDHQPDHQPDHPLDHQLDHQLEHQSEHKPDHQPEHQPEHHPE
HQPGHQPDHQLDHQPEHQPEYQPEHPTEHRLEHQSVHHMEQSHTRQHSDQ
PQPAQQQQLLEQNLEGERDGLQRELPLRKSGSNRRKRYRCGYCHELGHNQ
KTCPLRPPHVPTSTSRSHTYKTSLPNLPQLHDLAAKLAEDLGRVFLEIAP
TPPGEGWQPSQRISFDVVLEAANKGVMHANQSVVDANTDDEFESSLEHLQ
SAVHLMEKVATLIYKSAIIARIINRCQEDPALSNE*
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mRNA from alignment at ScGOVlb_24229:1481476..1482633+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7074.t1 ID=Gvermi7074.t1|Name=Gvermi7074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24229:1481476..1482633+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGAGCATCATATCGACCATCAAGTCAAGGACCAACCTGAGCATCA
ACCCGAACACCAACACCCACCCGAACACCAACCCGAACACCAACCCGAAC
ACCAACCCGAACGCCAACCCGAACACCAACCCGAGCACCGACCTGAGCAC
CAACCCGAGCACCGACCTGAGCACCAACCCGAGCACCAACAAGAACACCA
ACTCGACCACCAGTCCGAACACCAACTCCACCCCCACCAGTCCGAACATC
AGTCCGAACAGGATTCCGAACACCAGTTCGACCACCAGCCCGACCACCAG
CCCGACCACCAGCCCGACCACCAGCCCGACCACCAGCCCGACCACCAGCC
CGACCACCCGCTCGACCACCAGCTGGACCACCAGCTCGAGCATCAGTCCG
AGCACAAACCCGACCACCAGCCCGAACACCAGCCGGAGCACCACCCCGAG
CATCAACCCGGGCATCAACCCGATCATCAACTCGATCATCAGCCTGAGCA
TCAGCCCGAGTATCAGCCCGAGCATCCGACCGAGCACCGGCTGGAGCACC
AGTCTGTGCATCATATGGAGCAGTCGCATACACGGCAACACTCAGACCAA
CCGCAACCTGCGCAACAGCAACAGCTTCTTGAGCAGAACTTGGAAGGCGA
AAGGGATGGCCTGCAACGAGAACTGCCATTGAGGAAATCCGGATCTAACC
GACGAAAGCGCTATCGCTGCGGATATTGCCACGAGCTAGGTCACAATCAG
AAGACCTGCCCGCTCCGACCTCCACATGTGCCAACATCCACGTCCCGATC
ACATACGTACAAGACCTCACTGCCGAATCTGCCTCAGTTACATGATCTCG
CCGCCAAACTCGCCGAAGATCTGGGAAGGGTGTTCCTTGAGATAGCGCCG
ACGCCCCCCGGGGAGGGCTGGCAGCCATCACAGAGAATTTCGTTCGATGT
TGTCCTTGAGGCGGCAAACAAGGGGGTCATGCACGCCAATCAATCTGTGG
TTGATGCCAACACTGATGACGAATTTGAGAGTTCCCTGGAACATTTGCAG
TCAGCTGTGCATCTCATGGAAAAGGTCGCAACCCTTATATACAAGAGCGC
TATAATTGCCCGTATCATAAATCGTTGCCAGGAAGATCCCGCCTTAAGTA
ACGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1481476..1482633+

>Gvermi7074.t1 ID=Gvermi7074.t1|Name=Gvermi7074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24229:1481476..1482633+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGAGCATCATATCGACCATCAAGTCAAGGACCAACCTGAGCATCA
ACCCGAACACCAACACCCACCCGAACACCAACCCGAACACCAACCCGAAC
ACCAACCCGAACGCCAACCCGAACACCAACCCGAGCACCGACCTGAGCAC
CAACCCGAGCACCGACCTGAGCACCAACCCGAGCACCAACAAGAACACCA
ACTCGACCACCAGTCCGAACACCAACTCCACCCCCACCAGTCCGAACATC
AGTCCGAACAGGATTCCGAACACCAGTTCGACCACCAGCCCGACCACCAG
CCCGACCACCAGCCCGACCACCAGCCCGACCACCAGCCCGACCACCAGCC
CGACCACCCGCTCGACCACCAGCTGGACCACCAGCTCGAGCATCAGTCCG
AGCACAAACCCGACCACCAGCCCGAACACCAGCCGGAGCACCACCCCGAG
CATCAACCCGGGCATCAACCCGATCATCAACTCGATCATCAGCCTGAGCA
TCAGCCCGAGTATCAGCCCGAGCATCCGACCGAGCACCGGCTGGAGCACC
AGTCTGTGCATCATATGGAGCAGTCGCATACACGGCAACACTCAGACCAA
CCGCAACCTGCGCAACAGCAACAGCTTCTTGAGCAGAACTTGGAAGGCGA
AAGGGATGGCCTGCAACGAGAACTGCCATTGAGGAAATCCGGATCTAACC
GACGAAAGCGCTATCGCTGCGGATATTGCCACGAGCTAGGTCACAATCAG
AAGACCTGCCCGCTCCGACCTCCACATGTGCCAACATCCACGTCCCGATC
ACATACGTACAAGACCTCACTGCCGAATCTGCCTCAGTTACATGATCTCG
CCGCCAAACTCGCCGAAGATCTGGGAAGGGTGTTCCTTGAGATAGCGCCG
ACGCCCCCCGGGGAGGGCTGGCAGCCATCACAGAGAATTTCGTTCGATGT
TGTCCTTGAGGCGGCAAACAAGGGGGTCATGCACGCCAATCAATCTGTGG
TTGATGCCAACACTGATGACGAATTTGAGAGTTCCCTGGAACATTTGCAG
TCAGCTGTGCATCTCATGGAAAAGGTCGCAACCCTTATATACAAGAGCGC
TATAATTGCCCGTATCATAAATCGTTGCCAGGAAGATCCCGCCTTAAGTA
ACGAATGA
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