Gvermi7069.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7069.t1
Unique NameGvermi7069.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1442045..1442979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7069Gvermi7069Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1442045..1442979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7069.t1Gvermi7069.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1442045..1442979 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7069.t1.stop1Gvermi7069.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1442045..1442047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7069.t1.CDS1Gvermi7069.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1442045..1442286 -
Gvermi7069.t1.CDS2Gvermi7069.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1442407..1442779 -
Gvermi7069.t1.CDS3Gvermi7069.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1442836..1442979 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7069.t1.exon1Gvermi7069.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1442045..1442286 -
Gvermi7069.t1.exon2Gvermi7069.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1442407..1442779 -
Gvermi7069.t1.exon3Gvermi7069.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1442836..1442979 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7069.t1.intron1Gvermi7069.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1442287..1442406 -
Gvermi7069.t1.intron2Gvermi7069.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1442780..1442835 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7069.t1.start1Gvermi7069.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1442977..1442979 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7069.t1 ID=Gvermi7069.t1|Name=Gvermi7069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=253bp
MMLGTLCNAQLVSATTCEQLTDELLGETLTDRTVIYFANVRSDEIERMLA
IDYENALCAEGYRDTLEKRLQAAIKHIRDCTRLPALRERKVKVLQNEKKG
CRFNQLYDFMQRLVQEAELLQAEGCNEHVLVKDVNMDCEPVGIGVEEHKA
KQTKCHDRTDDVTLSVPCEIVMSSNEKEIRQEVKKEMEQEKIDNVRILNI
DKNCILFQVSYAEAIADAVIGKVQLADALIGEGFRNSCIEAFQMEYSKIH
DS*
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spliced messenger RNA

>Gvermi7069.t1 ID=Gvermi7069.t1|Name=Gvermi7069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_24229:1442045..1442979- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTAGGTACTTTGTGCAACGCGCAGTTGGTATCTGCGACTACTTG
CGAACAATTGACGGATGAATTGCTAGGAGAGACACTTACTGATCGCACTG
TGATCTATTTTGCCAACGTTAGATCTGATGAAATCGAGCGCATGCTGGCC
ATCGATTATGAAAACGCGCTGTGTGCGGAAGGATATCGGGATACGCTTGA
AAAGCGCCTTCAAGCAGCCATAAAGCACATCAGAGATTGTACGAGACTTC
CCGCGTTGCGGGAGAGAAAGGTCAAGGTCTTGCAGAATGAAAAGAAAGGA
TGTCGGTTCAATCAATTATACGATTTCATGCAAAGACTGGTACAAGAAGC
GGAGTTATTGCAGGCAGAAGGATGCAATGAACACGTACTCGTAAAAGATG
TTAATATGGACTGTGAGCCGGTTGGAATCGGGGTGGAAGAGCACAAGGCC
AAGCAGACGAAATGTCACGATCGCACAGACGATGTGACTCTTTCAGTCCC
GTGCGAAATCGTGATGTCGAGCAATGAGAAGGAAATACGGCAGGAAGTCA
AAAAAGAAATGGAGCAGGAAAAGATTGACAATGTTCGCATCTTGAATATC
GACAAAAATTGTATTCTGTTTCAGGTTTCGTATGCAGAAGCGATTGCGGA
TGCAGTTATCGGCAAGGTCCAACTGGCAGATGCCTTGATTGGTGAAGGTT
TTCGTAATTCATGCATAGAAGCATTTCAGATGGAATACTCTAAGATTCAT
GACAGTTGA
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protein sequence of Gvermi7069.t1

>Gvermi7069.t1 ID=Gvermi7069.t1|Name=Gvermi7069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=253bp
MMLGTLCNAQLVSATTCEQLTDELLGETLTDRTVIYFANVRSDEIERMLA
IDYENALCAEGYRDTLEKRLQAAIKHIRDCTRLPALRERKVKVLQNEKKG
CRFNQLYDFMQRLVQEAELLQAEGCNEHVLVKDVNMDCEPVGIGVEEHKA
KQTKCHDRTDDVTLSVPCEIVMSSNEKEIRQEVKKEMEQEKIDNVRILNI
DKNCILFQVSYAEAIADAVIGKVQLADALIGEGFRNSCIEAFQMEYSKIH
DS*
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mRNA from alignment at ScGOVlb_24229:1442045..1442979-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7069.t1 ID=Gvermi7069.t1|Name=Gvermi7069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=935bp|location=Sequence derived from alignment at ScGOVlb_24229:1442045..1442979- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTAGGTACTTTGTGCAACGCGCAGTTGGTATCTGCGACTACTTG
CGAACAATTGACGGATGAATTGCTAGGAGAGACACTTACTGATCGCACTG
TGATCTATTTTGCCAACGTTAGATCTGATGAAATCGAGCGCATGGTAAGT
GACGTGAAAATGGTTATGAGCATTAGGGATAGTGAACTCGAGTGTGGCAG
CTGGCCATCGATTATGAAAACGCGCTGTGTGCGGAAGGATATCGGGATAC
GCTTGAAAAGCGCCTTCAAGCAGCCATAAAGCACATCAGAGATTGTACGA
GACTTCCCGCGTTGCGGGAGAGAAAGGTCAAGGTCTTGCAGAATGAAAAG
AAAGGATGTCGGTTCAATCAATTATACGATTTCATGCAAAGACTGGTACA
AGAAGCGGAGTTATTGCAGGCAGAAGGATGCAATGAACACGTACTCGTAA
AAGATGTTAATATGGACTGTGAGCCGGTTGGAATCGGGGTGGAAGAGCAC
AAGGCCAAGCAGACGAAATGTCACGATCGCACAGACGATGTGACTCTTTC
AGTCCCGTGCGAAATCGTGATGTGTGCGATCAGTGCGGTGAGAACTCCGC
TTTGTTGGAACAGGGAAAAAGTGTTTCGGACAGAGGCATTGATTGAAGCA
CGGTCCACACTCGACAAATGAGGAGAAGCGGTATTGCTTTAAGCGAGCAA
TGAGAAGGAAATACGGCAGGAAGTCAAAAAAGAAATGGAGCAGGAAAAGA
TTGACAATGTTCGCATCTTGAATATCGACAAAAATTGTATTCTGTTTCAG
GTTTCGTATGCAGAAGCGATTGCGGATGCAGTTATCGGCAAGGTCCAACT
GGCAGATGCCTTGATTGGTGAAGGTTTTCGTAATTCATGCATAGAAGCAT
TTCAGATGGAATACTCTAAGATTCATGACAGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1442045..1442979-

>Gvermi7069.t1 ID=Gvermi7069.t1|Name=Gvermi7069.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=759bp|location=Sequence derived from alignment at ScGOVlb_24229:1442045..1442979- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTAGGTACTTTGTGCAACGCGCAGTTGGTATCTGCGACTACTTG
CGAACAATTGACGGATGAATTGCTAGGAGAGACACTTACTGATCGCACTG
TGATCTATTTTGCCAACGTTAGATCTGATGAAATCGAGCGCATGCTGGCC
ATCGATTATGAAAACGCGCTGTGTGCGGAAGGATATCGGGATACGCTTGA
AAAGCGCCTTCAAGCAGCCATAAAGCACATCAGAGATTGTACGAGACTTC
CCGCGTTGCGGGAGAGAAAGGTCAAGGTCTTGCAGAATGAAAAGAAAGGA
TGTCGGTTCAATCAATTATACGATTTCATGCAAAGACTGGTACAAGAAGC
GGAGTTATTGCAGGCAGAAGGATGCAATGAACACGTACTCGTAAAAGATG
TTAATATGGACTGTGAGCCGGTTGGAATCGGGGTGGAAGAGCACAAGGCC
AAGCAGACGAAATGTCACGATCGCACAGACGATGTGACTCTTTCAGTCCC
GTGCGAAATCGTGATGTCGAGCAATGAGAAGGAAATACGGCAGGAAGTCA
AAAAAGAAATGGAGCAGGAAAAGATTGACAATGTTCGCATCTTGAATATC
GACAAAAATTGTATTCTGTTTCAGGTTTCGTATGCAGAAGCGATTGCGGA
TGCAGTTATCGGCAAGGTCCAACTGGCAGATGCCTTGATTGGTGAAGGTT
TTCGTAATTCATGCATAGAAGCATTTCAGATGGAATACTCTAAGATTCAT
GACAGTTGA
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