Gvermi7068.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7068.t1
Unique NameGvermi7068.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1441067..1441759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118166.JH976538_gene5428
PFAMsNAD_binding_10
Max annot lvl1117|Cyanobacteria
Evalue2.84e-13
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,1G3PB@1117|Cyanobacteria,1HA8X@1150|Oscillatoriales
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7068Gvermi7068Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1441067..1441759 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7068.t1.start1Gvermi7068.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1441067..1441069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7068.t1.CDS1Gvermi7068.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1441067..1441759 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7068.t1.exon1Gvermi7068.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1441067..1441759 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7068.t1.stop1Gvermi7068.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1441757..1441759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7068.t1Gvermi7068.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1441067..1441759 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7068.t1 ID=Gvermi7068.t1|Name=Gvermi7068.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=231bp
MSASILVIGASGRMGKRLIQCASHQNPVPAVHAFLRNPAALDASLSSLCA
SVRRGDALCVEHVYQALEATRATHVVVAVGVPNSHAPSTLRTDSAKVLTE
AIAQCGRRVKVVVISSIGAADSRIKFKLGFGKALSFMLRHVLSDHTAQEQ
CFNAFFDGDKREDLLIVRPTALQDGRGGRKLMLFDGGKTTPALNVDRRDV
AEWAVQQICGGAAHSQFGLAVNVTAAPAAY*
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spliced messenger RNA

>Gvermi7068.t1 ID=Gvermi7068.t1|Name=Gvermi7068.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=693bp|location=Sequence derived from alignment at ScGOVlb_24229:1441067..1441759+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCTCAATCCTCGTTATCGGAGCCTCTGGTCGCATGGGAAAGCG
CCTCATCCAATGCGCCTCGCACCAGAATCCCGTGCCTGCCGTCCACGCCT
TCTTGAGAAACCCCGCCGCGCTGGACGCCTCCCTGTCCTCGCTGTGTGCA
TCGGTTCGCCGCGGCGATGCGCTCTGCGTCGAGCACGTGTATCAAGCGCT
TGAGGCCACGCGTGCGACGCACGTGGTTGTGGCCGTCGGCGTTCCCAACA
GTCATGCACCCAGCACATTGCGCACCGATTCTGCTAAAGTGCTTACGGAA
GCCATAGCGCAATGCGGCCGCCGCGTCAAGGTGGTGGTTATCTCCAGTAT
TGGCGCCGCAGACTCTCGAATCAAATTCAAGCTCGGCTTTGGGAAAGCGC
TTTCTTTCATGCTTCGACATGTATTAAGCGATCACACCGCACAGGAGCAA
TGTTTCAATGCGTTCTTTGATGGCGACAAAAGGGAGGATTTGTTGATTGT
GAGGCCTACCGCGCTTCAGGACGGTCGTGGTGGACGTAAGTTAATGCTAT
TTGATGGCGGCAAAACTACACCTGCTTTGAATGTTGACCGGAGGGATGTC
GCGGAGTGGGCAGTGCAGCAAATTTGTGGTGGTGCGGCGCATAGCCAATT
TGGACTTGCCGTCAATGTCACCGCTGCTCCGGCAGCTTACTAA
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protein sequence of Gvermi7068.t1

>Gvermi7068.t1 ID=Gvermi7068.t1|Name=Gvermi7068.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=231bp
MSASILVIGASGRMGKRLIQCASHQNPVPAVHAFLRNPAALDASLSSLCA
SVRRGDALCVEHVYQALEATRATHVVVAVGVPNSHAPSTLRTDSAKVLTE
AIAQCGRRVKVVVISSIGAADSRIKFKLGFGKALSFMLRHVLSDHTAQEQ
CFNAFFDGDKREDLLIVRPTALQDGRGGRKLMLFDGGKTTPALNVDRRDV
AEWAVQQICGGAAHSQFGLAVNVTAAPAAY*
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mRNA from alignment at ScGOVlb_24229:1441067..1441759+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7068.t1 ID=Gvermi7068.t1|Name=Gvermi7068.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=693bp|location=Sequence derived from alignment at ScGOVlb_24229:1441067..1441759+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCTCAATCCTCGTTATCGGAGCCTCTGGTCGCATGGGAAAGCG
CCTCATCCAATGCGCCTCGCACCAGAATCCCGTGCCTGCCGTCCACGCCT
TCTTGAGAAACCCCGCCGCGCTGGACGCCTCCCTGTCCTCGCTGTGTGCA
TCGGTTCGCCGCGGCGATGCGCTCTGCGTCGAGCACGTGTATCAAGCGCT
TGAGGCCACGCGTGCGACGCACGTGGTTGTGGCCGTCGGCGTTCCCAACA
GTCATGCACCCAGCACATTGCGCACCGATTCTGCTAAAGTGCTTACGGAA
GCCATAGCGCAATGCGGCCGCCGCGTCAAGGTGGTGGTTATCTCCAGTAT
TGGCGCCGCAGACTCTCGAATCAAATTCAAGCTCGGCTTTGGGAAAGCGC
TTTCTTTCATGCTTCGACATGTATTAAGCGATCACACCGCACAGGAGCAA
TGTTTCAATGCGTTCTTTGATGGCGACAAAAGGGAGGATTTGTTGATTGT
GAGGCCTACCGCGCTTCAGGACGGTCGTGGTGGACGTAAGTTAATGCTAT
TTGATGGCGGCAAAACTACACCTGCTTTGAATGTTGACCGGAGGGATGTC
GCGGAGTGGGCAGTGCAGCAAATTTGTGGTGGTGCGGCGCATAGCCAATT
TGGACTTGCCGTCAATGTCACCGCTGCTCCGGCAGCTTACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1441067..1441759+

>Gvermi7068.t1 ID=Gvermi7068.t1|Name=Gvermi7068.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=693bp|location=Sequence derived from alignment at ScGOVlb_24229:1441067..1441759+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCTCAATCCTCGTTATCGGAGCCTCTGGTCGCATGGGAAAGCG
CCTCATCCAATGCGCCTCGCACCAGAATCCCGTGCCTGCCGTCCACGCCT
TCTTGAGAAACCCCGCCGCGCTGGACGCCTCCCTGTCCTCGCTGTGTGCA
TCGGTTCGCCGCGGCGATGCGCTCTGCGTCGAGCACGTGTATCAAGCGCT
TGAGGCCACGCGTGCGACGCACGTGGTTGTGGCCGTCGGCGTTCCCAACA
GTCATGCACCCAGCACATTGCGCACCGATTCTGCTAAAGTGCTTACGGAA
GCCATAGCGCAATGCGGCCGCCGCGTCAAGGTGGTGGTTATCTCCAGTAT
TGGCGCCGCAGACTCTCGAATCAAATTCAAGCTCGGCTTTGGGAAAGCGC
TTTCTTTCATGCTTCGACATGTATTAAGCGATCACACCGCACAGGAGCAA
TGTTTCAATGCGTTCTTTGATGGCGACAAAAGGGAGGATTTGTTGATTGT
GAGGCCTACCGCGCTTCAGGACGGTCGTGGTGGACGTAAGTTAATGCTAT
TTGATGGCGGCAAAACTACACCTGCTTTGAATGTTGACCGGAGGGATGTC
GCGGAGTGGGCAGTGCAGCAAATTTGTGGTGGTGCGGCGCATAGCCAATT
TGGACTTGCCGTCAATGTCACCGCTGCTCCGGCAGCTTACTAA
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