Gvermi7055.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7055.t1
Unique NameGvermi7055.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1322774..1323568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000019919
PFAMsCyt-b5,FA_desaturase
Max annot lvl121069|Pythiales
Evalue5.69e-90
EggNOG OGsCOG3239@1|root,KOG4232@2759|Eukaryota,1MCZA@121069|Pythiales
DescriptionDelta-5 fatty acid desaturase. Source PGD
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7055Gvermi7055Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1322774..1323568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7055.t1.start1Gvermi7055.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1322774..1322776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7055.t1.CDS1Gvermi7055.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1322774..1323568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7055.t1.exon1Gvermi7055.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1322774..1323568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7055.t1.stop1Gvermi7055.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1323566..1323568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7055.t1Gvermi7055.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1322774..1323568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7055.t1 ID=Gvermi7055.t1|Name=Gvermi7055.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=265bp
MVSWRNQHVMGHHVYTNVMGADPDLPTSLHADARRLVRQQRWAPLYRWQH
LYLPPLYGLLALKARVQDVSEVFWRLTNGPIRVNPIAVQDYVRLVSSKSV
WLFYRLVVPLAVARALPPPHVALLAALVELTTGYWLAFNFQVSHVSSEAH
FLFSDVRRRAAHKCPAAFDDEWAHSQLRTTVDYAHGSAAAAWLSGALNYQ
TVHHLFPTVSQYHYAAITPIVMRVAERHGLRFNVLPGFGAALRAHLRHLR
RMGRAGQRAPLALD*
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spliced messenger RNA

>Gvermi7055.t1 ID=Gvermi7055.t1|Name=Gvermi7055.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_24229:1322774..1323568+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGTGGCGCAACCAGCACGTCATGGGGCACCATGTGTACACCAA
CGTGATGGGCGCCGACCCGGACCTGCCCACGTCGCTGCACGCGGACGCGC
GGCGGCTGGTGCGGCAGCAGCGCTGGGCGCCGCTGTACCGCTGGCAGCAC
CTGTACCTGCCGCCGCTGTACGGGCTGCTGGCGCTCAAGGCGCGCGTGCA
GGACGTGAGCGAGGTGTTCTGGCGCCTCACCAACGGCCCCATCCGCGTGA
ACCCCATCGCCGTGCAGGACTACGTGCGGCTGGTGTCGTCCAAGAGCGTG
TGGCTGTTCTACCGGCTGGTGGTGCCGCTGGCGGTGGCGCGCGCGCTGCC
GCCGCCGCACGTCGCGCTGCTGGCCGCGCTCGTCGAGCTCACCACCGGCT
ACTGGCTGGCGTTCAACTTCCAGGTGAGTCACGTGTCGAGCGAGGCGCAC
TTTCTCTTCTCCGACGTGCGCCGCCGCGCCGCGCACAAGTGCCCGGCCGC
CTTTGACGACGAGTGGGCGCACTCGCAGCTGCGCACCACGGTGGACTACG
CGCACGGCAGCGCCGCCGCCGCGTGGCTGTCGGGCGCGCTCAACTACCAG
ACCGTGCACCACCTGTTCCCCACCGTCAGCCAGTACCACTACGCCGCCAT
CACGCCCATCGTCATGCGCGTGGCCGAGCGCCACGGGCTGCGCTTCAACG
TGCTGCCGGGCTTTGGCGCCGCGCTGCGCGCGCACCTGCGCCACCTGCGC
CGCATGGGGCGCGCCGGCCAGCGCGCCCCGCTCGCGCTCGACTGA
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protein sequence of Gvermi7055.t1

>Gvermi7055.t1 ID=Gvermi7055.t1|Name=Gvermi7055.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MVSWRNQHVMGHHVYTNVMGADPDLPTSLHADARRLVRQQRWAPLYRWQH
LYLPPLYGLLALKARVQDVSEVFWRLTNGPIRVNPIAVQDYVRLVSSKSV
WLFYRLVVPLAVARALPPPHVALLAALVELTTGYWLAFNFQVSHVSSEAH
FLFSDVRRRAAHKCPAAFDDEWAHSQLRTTVDYAHGSAAAAWLSGALNYQ
TVHHLFPTVSQYHYAAITPIVMRVAERHGLRFNVLPGFGAALRAHLRHLR
RMGRAGQRAPLALD*
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mRNA from alignment at ScGOVlb_24229:1322774..1323568+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7055.t1 ID=Gvermi7055.t1|Name=Gvermi7055.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_24229:1322774..1323568+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTCGTGGCGCAACCAGCACGTCATGGGGCACCATGTGTACACCAA
CGTGATGGGCGCCGACCCGGACCTGCCCACGTCGCTGCACGCGGACGCGC
GGCGGCTGGTGCGGCAGCAGCGCTGGGCGCCGCTGTACCGCTGGCAGCAC
CTGTACCTGCCGCCGCTGTACGGGCTGCTGGCGCTCAAGGCGCGCGTGCA
GGACGTGAGCGAGGTGTTCTGGCGCCTCACCAACGGCCCCATCCGCGTGA
ACCCCATCGCCGTGCAGGACTACGTGCGGCTGGTGTCGTCCAAGAGCGTG
TGGCTGTTCTACCGGCTGGTGGTGCCGCTGGCGGTGGCGCGCGCGCTGCC
GCCGCCGCACGTCGCGCTGCTGGCCGCGCTCGTCGAGCTCACCACCGGCT
ACTGGCTGGCGTTCAACTTCCAGGTGAGTCACGTGTCGAGCGAGGCGCAC
TTTCTCTTCTCCGACGTGCGCCGCCGCGCCGCGCACAAGTGCCCGGCCGC
CTTTGACGACGAGTGGGCGCACTCGCAGCTGCGCACCACGGTGGACTACG
CGCACGGCAGCGCCGCCGCCGCGTGGCTGTCGGGCGCGCTCAACTACCAG
ACCGTGCACCACCTGTTCCCCACCGTCAGCCAGTACCACTACGCCGCCAT
CACGCCCATCGTCATGCGCGTGGCCGAGCGCCACGGGCTGCGCTTCAACG
TGCTGCCGGGCTTTGGCGCCGCGCTGCGCGCGCACCTGCGCCACCTGCGC
CGCATGGGGCGCGCCGGCCAGCGCGCCCCGCTCGCGCTCGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1322774..1323568+

>Gvermi7055.t1 ID=Gvermi7055.t1|Name=Gvermi7055.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=795bp|location=Sequence derived from alignment at ScGOVlb_24229:1322774..1323568+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTCGTGGCGCAACCAGCACGTCATGGGGCACCATGTGTACACCAA
CGTGATGGGCGCCGACCCGGACCTGCCCACGTCGCTGCACGCGGACGCGC
GGCGGCTGGTGCGGCAGCAGCGCTGGGCGCCGCTGTACCGCTGGCAGCAC
CTGTACCTGCCGCCGCTGTACGGGCTGCTGGCGCTCAAGGCGCGCGTGCA
GGACGTGAGCGAGGTGTTCTGGCGCCTCACCAACGGCCCCATCCGCGTGA
ACCCCATCGCCGTGCAGGACTACGTGCGGCTGGTGTCGTCCAAGAGCGTG
TGGCTGTTCTACCGGCTGGTGGTGCCGCTGGCGGTGGCGCGCGCGCTGCC
GCCGCCGCACGTCGCGCTGCTGGCCGCGCTCGTCGAGCTCACCACCGGCT
ACTGGCTGGCGTTCAACTTCCAGGTGAGTCACGTGTCGAGCGAGGCGCAC
TTTCTCTTCTCCGACGTGCGCCGCCGCGCCGCGCACAAGTGCCCGGCCGC
CTTTGACGACGAGTGGGCGCACTCGCAGCTGCGCACCACGGTGGACTACG
CGCACGGCAGCGCCGCCGCCGCGTGGCTGTCGGGCGCGCTCAACTACCAG
ACCGTGCACCACCTGTTCCCCACCGTCAGCCAGTACCACTACGCCGCCAT
CACGCCCATCGTCATGCGCGTGGCCGAGCGCCACGGGCTGCGCTTCAACG
TGCTGCCGGGCTTTGGCGCCGCGCTGCGCGCGCACCTGCGCCACCTGCGC
CGCATGGGGCGCGCCGGCCAGCGCGCCCCGCTCGCGCTCGACTGA
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