Gvermi7051.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7051.t1
Unique NameGvermi7051.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1310536..1311612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog136037.KDR09129
Preferred nameCCNH
PFAMsCyclin_C_2,Cyclin_N
Max annot lvl33208|Metazoa
KEGG koko:K06634
KEGG Pathwayko03022,ko03420,ko04110,map03022,map03420,map04110
KEGG ModuleM00290
GOsGO:0000079,GO:0000307,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009452,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016538,GO:0016591,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019907,GO:0019908,GO:0022607,GO:0030234,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097472,GO:0097659,GO:0098772,GO:0140096,GO:0150005,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue4.07e-21
EggNOG OGsCOG5333@1|root,KOG2496@2759|Eukaryota,38DJD@33154|Opisthokonta,3BFF1@33208|Metazoa,3CUDB@33213|Bilateria,41XRR@6656|Arthropoda,3SFWR@50557|Insecta
Descriptioncyclin-dependent protein serine threonine kinase regulator activity. It is involved in the biological process described with regulation of transcription, DNA-templated
COG categoryDKL
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7051Gvermi7051Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1310536..1311612 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7051.t1.stop1Gvermi7051.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1310536..1310538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7051.t1.CDS1Gvermi7051.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1310536..1311612 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7051.t1.exon1Gvermi7051.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1310536..1311612 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7051.t1.start1Gvermi7051.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1311610..1311612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7051.t1Gvermi7051.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1310536..1311612 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7051.t1 ID=Gvermi7051.t1|Name=Gvermi7051.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=359bp
MALYQDSTQARFWCITAKDVLSLRNETHRHALSSRPSDPKPLAIPQEALI
RRHHERRILRFNRANSLPDKLAATAIMYFKRFFLHRSVMDYNPSVIALSA
LYASSKVEEIVFDANDLVARFDASVNGVASDASLETTPMSADGCAMRVSA
DAILNTELWFLQQINFHLICYHPFKSLGIVREKLLSSNACGEGQQASSAL
SELIATAENIIRRRALLTDLPLSQPPAIIAIAATLLASEPKANPTEKQLF
QILVGDDSNLINRIQVTAKVLRPLTDHTPEHEAKQVAALEKHRQVVQKNI
NDPMSQEYKEMEQKQLRQEDEEELQRARAFQEKLKRRAEVLSGFADMNVS
SKRRKVET*
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spliced messenger RNA

>Gvermi7051.t1 ID=Gvermi7051.t1|Name=Gvermi7051.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at ScGOVlb_24229:1310536..1311612- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTCTACCAAGACTCCACTCAGGCGCGCTTCTGGTGCATCACCGC
CAAGGACGTGCTCTCGCTCCGCAATGAAACCCATCGCCATGCGCTGTCCT
CACGCCCTTCCGATCCGAAACCGCTCGCAATCCCGCAAGAAGCCCTCATT
CGCCGCCACCATGAACGAAGAATCCTTCGTTTTAACCGCGCTAACAGTCT
TCCTGACAAACTCGCAGCCACCGCCATCATGTACTTTAAACGCTTTTTCC
TGCATCGCTCGGTTATGGACTACAACCCCTCGGTCATCGCCCTCTCCGCT
CTCTATGCGTCCAGCAAGGTTGAGGAGATTGTGTTTGATGCAAACGACTT
GGTGGCTCGTTTTGACGCCTCTGTCAATGGAGTCGCCTCAGATGCTAGTC
TGGAAACCACTCCAATGTCAGCGGATGGCTGTGCCATGAGAGTGTCTGCC
GATGCCATACTCAACACTGAGCTCTGGTTTTTGCAACAAATCAATTTTCA
TCTGATATGCTATCACCCTTTCAAATCGTTGGGAATTGTCCGCGAAAAGC
TTCTTTCGTCAAACGCATGCGGTGAGGGTCAGCAAGCCAGCTCCGCGCTG
TCCGAACTCATTGCAACAGCGGAGAACATAATTCGAAGAAGAGCATTACT
AACTGATTTACCCCTATCGCAACCACCTGCCATCATCGCCATCGCGGCAA
CCCTGTTGGCATCCGAGCCGAAAGCAAACCCTACGGAAAAGCAGCTTTTT
CAAATTCTCGTTGGAGATGATTCCAACCTCATCAACAGAATACAAGTGAC
TGCAAAGGTTTTGCGGCCTCTCACTGACCACACCCCTGAACACGAAGCAA
AGCAAGTCGCTGCGCTTGAGAAGCATAGACAAGTTGTACAGAAAAATATT
AACGACCCTATGAGTCAGGAGTACAAGGAAATGGAGCAGAAGCAACTGAG
ACAGGAAGATGAAGAGGAGCTACAAAGAGCAAGAGCATTTCAGGAAAAAC
TAAAGCGTAGAGCAGAGGTTTTGTCAGGATTTGCTGACATGAATGTGTCG
AGTAAAAGGAGAAAAGTGGAAACTTGA
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protein sequence of Gvermi7051.t1

>Gvermi7051.t1 ID=Gvermi7051.t1|Name=Gvermi7051.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=359bp
MALYQDSTQARFWCITAKDVLSLRNETHRHALSSRPSDPKPLAIPQEALI
RRHHERRILRFNRANSLPDKLAATAIMYFKRFFLHRSVMDYNPSVIALSA
LYASSKVEEIVFDANDLVARFDASVNGVASDASLETTPMSADGCAMRVSA
DAILNTELWFLQQINFHLICYHPFKSLGIVREKLLSSNACGEGQQASSAL
SELIATAENIIRRRALLTDLPLSQPPAIIAIAATLLASEPKANPTEKQLF
QILVGDDSNLINRIQVTAKVLRPLTDHTPEHEAKQVAALEKHRQVVQKNI
NDPMSQEYKEMEQKQLRQEDEEELQRARAFQEKLKRRAEVLSGFADMNVS
SKRRKVET*
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mRNA from alignment at ScGOVlb_24229:1310536..1311612-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7051.t1 ID=Gvermi7051.t1|Name=Gvermi7051.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at ScGOVlb_24229:1310536..1311612- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACTCTACCAAGACTCCACTCAGGCGCGCTTCTGGTGCATCACCGC
CAAGGACGTGCTCTCGCTCCGCAATGAAACCCATCGCCATGCGCTGTCCT
CACGCCCTTCCGATCCGAAACCGCTCGCAATCCCGCAAGAAGCCCTCATT
CGCCGCCACCATGAACGAAGAATCCTTCGTTTTAACCGCGCTAACAGTCT
TCCTGACAAACTCGCAGCCACCGCCATCATGTACTTTAAACGCTTTTTCC
TGCATCGCTCGGTTATGGACTACAACCCCTCGGTCATCGCCCTCTCCGCT
CTCTATGCGTCCAGCAAGGTTGAGGAGATTGTGTTTGATGCAAACGACTT
GGTGGCTCGTTTTGACGCCTCTGTCAATGGAGTCGCCTCAGATGCTAGTC
TGGAAACCACTCCAATGTCAGCGGATGGCTGTGCCATGAGAGTGTCTGCC
GATGCCATACTCAACACTGAGCTCTGGTTTTTGCAACAAATCAATTTTCA
TCTGATATGCTATCACCCTTTCAAATCGTTGGGAATTGTCCGCGAAAAGC
TTCTTTCGTCAAACGCATGCGGTGAGGGTCAGCAAGCCAGCTCCGCGCTG
TCCGAACTCATTGCAACAGCGGAGAACATAATTCGAAGAAGAGCATTACT
AACTGATTTACCCCTATCGCAACCACCTGCCATCATCGCCATCGCGGCAA
CCCTGTTGGCATCCGAGCCGAAAGCAAACCCTACGGAAAAGCAGCTTTTT
CAAATTCTCGTTGGAGATGATTCCAACCTCATCAACAGAATACAAGTGAC
TGCAAAGGTTTTGCGGCCTCTCACTGACCACACCCCTGAACACGAAGCAA
AGCAAGTCGCTGCGCTTGAGAAGCATAGACAAGTTGTACAGAAAAATATT
AACGACCCTATGAGTCAGGAGTACAAGGAAATGGAGCAGAAGCAACTGAG
ACAGGAAGATGAAGAGGAGCTACAAAGAGCAAGAGCATTTCAGGAAAAAC
TAAAGCGTAGAGCAGAGGTTTTGTCAGGATTTGCTGACATGAATGTGTCG
AGTAAAAGGAGAAAAGTGGAAACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1310536..1311612-

>Gvermi7051.t1 ID=Gvermi7051.t1|Name=Gvermi7051.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1077bp|location=Sequence derived from alignment at ScGOVlb_24229:1310536..1311612- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACTCTACCAAGACTCCACTCAGGCGCGCTTCTGGTGCATCACCGC
CAAGGACGTGCTCTCGCTCCGCAATGAAACCCATCGCCATGCGCTGTCCT
CACGCCCTTCCGATCCGAAACCGCTCGCAATCCCGCAAGAAGCCCTCATT
CGCCGCCACCATGAACGAAGAATCCTTCGTTTTAACCGCGCTAACAGTCT
TCCTGACAAACTCGCAGCCACCGCCATCATGTACTTTAAACGCTTTTTCC
TGCATCGCTCGGTTATGGACTACAACCCCTCGGTCATCGCCCTCTCCGCT
CTCTATGCGTCCAGCAAGGTTGAGGAGATTGTGTTTGATGCAAACGACTT
GGTGGCTCGTTTTGACGCCTCTGTCAATGGAGTCGCCTCAGATGCTAGTC
TGGAAACCACTCCAATGTCAGCGGATGGCTGTGCCATGAGAGTGTCTGCC
GATGCCATACTCAACACTGAGCTCTGGTTTTTGCAACAAATCAATTTTCA
TCTGATATGCTATCACCCTTTCAAATCGTTGGGAATTGTCCGCGAAAAGC
TTCTTTCGTCAAACGCATGCGGTGAGGGTCAGCAAGCCAGCTCCGCGCTG
TCCGAACTCATTGCAACAGCGGAGAACATAATTCGAAGAAGAGCATTACT
AACTGATTTACCCCTATCGCAACCACCTGCCATCATCGCCATCGCGGCAA
CCCTGTTGGCATCCGAGCCGAAAGCAAACCCTACGGAAAAGCAGCTTTTT
CAAATTCTCGTTGGAGATGATTCCAACCTCATCAACAGAATACAAGTGAC
TGCAAAGGTTTTGCGGCCTCTCACTGACCACACCCCTGAACACGAAGCAA
AGCAAGTCGCTGCGCTTGAGAAGCATAGACAAGTTGTACAGAAAAATATT
AACGACCCTATGAGTCAGGAGTACAAGGAAATGGAGCAGAAGCAACTGAG
ACAGGAAGATGAAGAGGAGCTACAAAGAGCAAGAGCATTTCAGGAAAAAC
TAAAGCGTAGAGCAGAGGTTTTGTCAGGATTTGCTGACATGAATGTGTCG
AGTAAAAGGAGAAAAGTGGAAACTTGA
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