Gvermi7048.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7048.t1
Unique NameGvermi7048.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1302910..1303551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S246_2V6.1
PFAMsMaf
Max annot lvl35493|Streptophyta
KEGG koko:K06287
Evalue1.85e-47
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota,37PFH@33090|Viridiplantae,3G84T@35493|Streptophyta
DescriptionMaf-like protein
COG categoryD
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7048Gvermi7048Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1302910..1303551 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7048.t1.stop1Gvermi7048.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1302910..1302912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7048.t1.CDS1Gvermi7048.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1302910..1303551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7048.t1.exon1Gvermi7048.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1302910..1303551 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7048.t1.start1Gvermi7048.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1303549..1303551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7048.t1Gvermi7048.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1302910..1303551 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7048.t1 ID=Gvermi7048.t1|Name=Gvermi7048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=214bp
MAFVAEPGWSSISRLILGSKSWSRRTILREMGLSMIDVEIPDIDERSIRH
EDPRELVKKIALAKARALLPRIRPMPFGKTILVTGDSVVTHKGRILEKPA
NENEAREFLESYATGPATTIASVAVVDVAKKQVWIGVDEAEVYFQKMPEH
VINELVTTGGALESAGGLRIEHPAVQKYIECIIGHKSAVMGFSKPLAERL
LNEALSSQGGNPI*
back to top

spliced messenger RNA

>Gvermi7048.t1 ID=Gvermi7048.t1|Name=Gvermi7048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_24229:1302910..1303551- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTAGCAGAACCTGGATGGTCATCGATTAGTCGTCTAATTCT
AGGATCCAAGTCATGGTCTCGACGAACGATTCTCCGAGAAATGGGGCTGT
CTATGATTGACGTGGAGATACCAGACATCGATGAACGCTCAATTCGTCAC
GAGGATCCTCGGGAGCTTGTCAAAAAAATAGCTCTCGCCAAGGCGCGCGC
GCTGCTTCCTCGAATCAGGCCAATGCCTTTTGGTAAGACAATTTTGGTCA
CTGGGGATTCCGTGGTGACGCACAAAGGACGAATTCTGGAAAAGCCAGCA
AACGAGAATGAGGCACGTGAGTTTCTAGAGAGTTATGCAACGGGCCCTGC
TACAACCATCGCCAGCGTTGCCGTGGTGGATGTTGCGAAGAAGCAGGTTT
GGATAGGGGTTGACGAAGCTGAGGTCTACTTTCAGAAAATGCCAGAGCAT
GTCATCAATGAGCTTGTTACTACCGGGGGCGCCTTAGAGAGTGCGGGGGG
TTTGAGGATTGAGCATCCTGCCGTACAGAAATACATTGAGTGCATAATAG
GACATAAAAGTGCTGTTATGGGTTTCTCAAAACCTCTGGCAGAAAGGTTA
CTCAACGAAGCGCTTTCGTCGCAGGGCGGCAATCCTATCTGA
back to top

protein sequence of Gvermi7048.t1

>Gvermi7048.t1 ID=Gvermi7048.t1|Name=Gvermi7048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=214bp
MAFVAEPGWSSISRLILGSKSWSRRTILREMGLSMIDVEIPDIDERSIRH
EDPRELVKKIALAKARALLPRIRPMPFGKTILVTGDSVVTHKGRILEKPA
NENEAREFLESYATGPATTIASVAVVDVAKKQVWIGVDEAEVYFQKMPEH
VINELVTTGGALESAGGLRIEHPAVQKYIECIIGHKSAVMGFSKPLAERL
LNEALSSQGGNPI*
back to top

mRNA from alignment at ScGOVlb_24229:1302910..1303551-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7048.t1 ID=Gvermi7048.t1|Name=Gvermi7048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=642bp|location=Sequence derived from alignment at ScGOVlb_24229:1302910..1303551- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTCGTAGCAGAACCTGGATGGTCATCGATTAGTCGTCTAATTCT
AGGATCCAAGTCATGGTCTCGACGAACGATTCTCCGAGAAATGGGGCTGT
CTATGATTGACGTGGAGATACCAGACATCGATGAACGCTCAATTCGTCAC
GAGGATCCTCGGGAGCTTGTCAAAAAAATAGCTCTCGCCAAGGCGCGCGC
GCTGCTTCCTCGAATCAGGCCAATGCCTTTTGGTAAGACAATTTTGGTCA
CTGGGGATTCCGTGGTGACGCACAAAGGACGAATTCTGGAAAAGCCAGCA
AACGAGAATGAGGCACGTGAGTTTCTAGAGAGTTATGCAACGGGCCCTGC
TACAACCATCGCCAGCGTTGCCGTGGTGGATGTTGCGAAGAAGCAGGTTT
GGATAGGGGTTGACGAAGCTGAGGTCTACTTTCAGAAAATGCCAGAGCAT
GTCATCAATGAGCTTGTTACTACCGGGGGCGCCTTAGAGAGTGCGGGGGG
TTTGAGGATTGAGCATCCTGCCGTACAGAAATACATTGAGTGCATAATAG
GACATAAAAGTGCTGTTATGGGTTTCTCAAAACCTCTGGCAGAAAGGTTA
CTCAACGAAGCGCTTTCGTCGCAGGGCGGCAATCCTATCTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1302910..1303551-

>Gvermi7048.t1 ID=Gvermi7048.t1|Name=Gvermi7048.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=642bp|location=Sequence derived from alignment at ScGOVlb_24229:1302910..1303551- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTCGTAGCAGAACCTGGATGGTCATCGATTAGTCGTCTAATTCT
AGGATCCAAGTCATGGTCTCGACGAACGATTCTCCGAGAAATGGGGCTGT
CTATGATTGACGTGGAGATACCAGACATCGATGAACGCTCAATTCGTCAC
GAGGATCCTCGGGAGCTTGTCAAAAAAATAGCTCTCGCCAAGGCGCGCGC
GCTGCTTCCTCGAATCAGGCCAATGCCTTTTGGTAAGACAATTTTGGTCA
CTGGGGATTCCGTGGTGACGCACAAAGGACGAATTCTGGAAAAGCCAGCA
AACGAGAATGAGGCACGTGAGTTTCTAGAGAGTTATGCAACGGGCCCTGC
TACAACCATCGCCAGCGTTGCCGTGGTGGATGTTGCGAAGAAGCAGGTTT
GGATAGGGGTTGACGAAGCTGAGGTCTACTTTCAGAAAATGCCAGAGCAT
GTCATCAATGAGCTTGTTACTACCGGGGGCGCCTTAGAGAGTGCGGGGGG
TTTGAGGATTGAGCATCCTGCCGTACAGAAATACATTGAGTGCATAATAG
GACATAAAAGTGCTGTTATGGGTTTCTCAAAACCTCTGGCAGAAAGGTTA
CTCAACGAAGCGCTTTCGTCGCAGGGCGGCAATCCTATCTGA
back to top