Gvermi7046.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7046.t1
Unique NameGvermi7046.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length531
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1298874..1300600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709015.1
PFAMsHD
Max annot lvl2759|Eukaryota
KEGG koko:K06941
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006163,GO:0006195,GO:0006203,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008832,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009144,GO:0009146,GO:0009151,GO:0009155,GO:0009166,GO:0009200,GO:0009204,GO:0009215,GO:0009217,GO:0009262,GO:0009264,GO:0009394,GO:0009987,GO:0016787,GO:0016788,GO:0016793,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046070,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576
Evalue3.42e-127
EggNOG OGsCOG1078@1|root,KOG2681@2759|Eukaryota
EC2.1.1.192
DescriptiondGTPase activity
COG categoryH
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7046Gvermi7046Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1298874..1300600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7046.t1Gvermi7046.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1298874..1300600 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7046.t1.start1Gvermi7046.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1298874..1298876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7046.t1.CDS1Gvermi7046.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1298874..1299708 +
Gvermi7046.t1.CDS2Gvermi7046.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1299772..1300186 +
Gvermi7046.t1.CDS3Gvermi7046.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1300258..1300600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7046.t1.exon1Gvermi7046.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1298874..1299708 +
Gvermi7046.t1.exon2Gvermi7046.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1299772..1300186 +
Gvermi7046.t1.exon3Gvermi7046.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1300258..1300600 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7046.t1.intron1Gvermi7046.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1299709..1299771 +
Gvermi7046.t1.intron2Gvermi7046.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1300187..1300257 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7046.t1.stop1Gvermi7046.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1300598..1300600 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7046.t1 ID=Gvermi7046.t1|Name=Gvermi7046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=531bp
MSNLSTASEPDAFDTIDSQSISPSQLRVKVINDSIHGHFELRDPILKVMD
TPHFQRLRDLKQLGAVYYVYPGASHNRFEHCIGVSHLSGTFVQKLYQNSR
DPCARMLYDGEHHYKHAQMLVQLAGLSHDLGHGPFSHMFDRAFLPAALDG
HADSRCLPLLMHEERSVSLFEHCVDAFNIDLTREDIRTVGQLIRGQRGAG
TLVPRFLFDVVANSNTGIDTDKFDYLARDVYNIGLQGAYGFDHRRLINFA
KVIQDDICFHRKEILNVYHLFLTRFQLHRTVYYHRAALSIDAMISDAFLH
ADSSLRLSTSILDPEQFLTVTDSMLSIIERSKEASLKPARDIIKRLRARK
LYRFVEEVLLPAGICRKITSAEITTCQDAAGTGVTLSPEDVYVAHVTLNF
GMKDKNPVDRVLFFKDWDDMSPTHISSAQASCLLPAVFQEQIIRIYVKRE
ESDDSNRVKKAVSVAFRNFMRRQSLGASLNSPVLRNGNREPAGVAGDSRT
SGTIEALANEIGETQATRAAKRCKPEGSAR*
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spliced messenger RNA

>Gvermi7046.t1 ID=Gvermi7046.t1|Name=Gvermi7046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1593bp|location=Sequence derived from alignment at ScGOVlb_24229:1298874..1300600+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACTTATCAACCGCCTCGGAGCCAGATGCTTTTGACACCATCGA
CTCGCAGTCCATATCACCTTCGCAACTCCGCGTCAAAGTGATCAATGATT
CCATTCACGGCCATTTCGAGCTTCGTGACCCTATTCTTAAAGTGATGGAT
ACGCCTCACTTTCAGCGTCTCCGCGACCTCAAGCAGTTGGGTGCCGTCTA
CTACGTGTATCCCGGCGCCTCACACAACAGGTTTGAGCATTGCATCGGAG
TATCTCATCTTTCCGGCACCTTCGTACAAAAGCTGTACCAAAACTCGAGG
GACCCATGCGCTCGAATGCTATATGATGGCGAGCACCACTATAAACATGC
CCAAATGTTGGTGCAGCTCGCTGGCCTTTCCCATGACCTGGGACACGGTC
CGTTTAGTCACATGTTTGATCGCGCGTTTCTGCCCGCGGCTCTGGACGGG
CACGCCGACTCTCGCTGTCTTCCACTTCTCATGCACGAGGAGCGCAGCGT
ATCCTTGTTTGAACACTGTGTGGATGCTTTCAACATCGACTTGACACGCG
AAGATATTCGCACCGTAGGCCAACTCATTCGCGGACAAAGGGGCGCAGGT
ACTCTGGTTCCTCGCTTTCTATTCGACGTGGTGGCCAATTCCAATACCGG
CATTGATACGGACAAATTTGATTACTTGGCAAGAGATGTGTACAACATTG
GTTTACAGGGGGCGTACGGCTTTGACCATCGCCGACTGATCAACTTTGCA
AAGGTTATACAAGATGACATCTGCTTTCACCGCAAAGAAATTTTGAACGT
CTACCATCTCTTTCTCACTCGCTTTCAGTTGCACCGCACTGTTTACTACC
ATCGAGCCGCATTGAGTATCGATGCCATGATTTCAGATGCTTTTCTTCAC
GCCGACAGTAGTTTACGCTTATCCACCTCAATTCTAGATCCAGAACAGTT
CCTCACTGTCACTGACAGTATGCTCTCCATCATCGAAAGATCTAAGGAAG
CATCTTTGAAGCCAGCCCGCGATATTATTAAAAGGCTGCGAGCGCGCAAG
TTGTACAGATTTGTTGAGGAGGTGCTCTTGCCAGCGGGAATATGTCGAAA
GATCACCTCCGCTGAAATCACGACATGCCAAGATGCTGCGGGAACAGGGG
TCACATTGAGTCCAGAGGATGTCTACGTTGCTCACGTAACTCTCAATTTC
GGAATGAAGGACAAAAACCCTGTGGACCGCGTCCTGTTCTTCAAAGATTG
GGATGACATGAGTCCAACGCATATATCATCTGCCCAGGCTTCGTGTCTTC
TCCCCGCCGTTTTCCAGGAGCAAATTATCCGGATATATGTAAAAAGAGAA
GAAAGCGACGACTCCAATCGCGTGAAAAAGGCCGTTTCGGTTGCCTTTCG
GAACTTTATGAGACGCCAGTCACTCGGAGCATCTCTGAACTCTCCGGTTC
TGAGAAACGGAAATAGGGAGCCAGCAGGAGTGGCGGGGGATTCACGCACG
TCAGGGACCATTGAAGCGCTTGCGAACGAAATAGGTGAGACGCAAGCGAC
CAGGGCTGCAAAGCGATGCAAACCTGAAGGCTCTGCACGTTGA
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protein sequence of Gvermi7046.t1

>Gvermi7046.t1 ID=Gvermi7046.t1|Name=Gvermi7046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=531bp
MSNLSTASEPDAFDTIDSQSISPSQLRVKVINDSIHGHFELRDPILKVMD
TPHFQRLRDLKQLGAVYYVYPGASHNRFEHCIGVSHLSGTFVQKLYQNSR
DPCARMLYDGEHHYKHAQMLVQLAGLSHDLGHGPFSHMFDRAFLPAALDG
HADSRCLPLLMHEERSVSLFEHCVDAFNIDLTREDIRTVGQLIRGQRGAG
TLVPRFLFDVVANSNTGIDTDKFDYLARDVYNIGLQGAYGFDHRRLINFA
KVIQDDICFHRKEILNVYHLFLTRFQLHRTVYYHRAALSIDAMISDAFLH
ADSSLRLSTSILDPEQFLTVTDSMLSIIERSKEASLKPARDIIKRLRARK
LYRFVEEVLLPAGICRKITSAEITTCQDAAGTGVTLSPEDVYVAHVTLNF
GMKDKNPVDRVLFFKDWDDMSPTHISSAQASCLLPAVFQEQIIRIYVKRE
ESDDSNRVKKAVSVAFRNFMRRQSLGASLNSPVLRNGNREPAGVAGDSRT
SGTIEALANEIGETQATRAAKRCKPEGSAR*
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mRNA from alignment at ScGOVlb_24229:1298874..1300600+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7046.t1 ID=Gvermi7046.t1|Name=Gvermi7046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1727bp|location=Sequence derived from alignment at ScGOVlb_24229:1298874..1300600+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAACTTATCAACCGCCTCGGAGCCAGATGCTTTTGACACCATCGA
CTCGCAGTCCATATCACCTTCGCAACTCCGCGTCAAAGTGATCAATGATT
CCATTCACGGCCATTTCGAGCTTCGTGACCCTATTCTTAAAGTGATGGAT
ACGCCTCACTTTCAGCGTCTCCGCGACCTCAAGCAGTTGGGTGCCGTCTA
CTACGTGTATCCCGGCGCCTCACACAACAGGTTTGAGCATTGCATCGGAG
TATCTCATCTTTCCGGCACCTTCGTACAAAAGCTGTACCAAAACTCGAGG
GACCCATGCGCTCGAATGCTATATGATGGCGAGCACCACTATAAACATGC
CCAAATGTTGGTGCAGCTCGCTGGCCTTTCCCATGACCTGGGACACGGTC
CGTTTAGTCACATGTTTGATCGCGCGTTTCTGCCCGCGGCTCTGGACGGG
CACGCCGACTCTCGCTGTCTTCCACTTCTCATGCACGAGGAGCGCAGCGT
ATCCTTGTTTGAACACTGTGTGGATGCTTTCAACATCGACTTGACACGCG
AAGATATTCGCACCGTAGGCCAACTCATTCGCGGACAAAGGGGCGCAGGT
ACTCTGGTTCCTCGCTTTCTATTCGACGTGGTGGCCAATTCCAATACCGG
CATTGATACGGACAAATTTGATTACTTGGCAAGAGATGTGTACAACATTG
GTTTACAGGGGGCGTACGGCTTTGACCATCGCCGACTGATCAACTTTGCA
AAGGTTATACAAGATGACATCTGCTTTCACCGCAAAGAAATTTTGAACGT
CTACCATCTCTTTCTCACTCGCTTTCAGTTGCACCGTACGTACCTCCACT
TTTCCATCTTGCTTTTGATTTGCCGGATTCTGCTCTAACATTGCTCAGGC
ACTGTTTACTACCATCGAGCCGCATTGAGTATCGATGCCATGATTTCAGA
TGCTTTTCTTCACGCCGACAGTAGTTTACGCTTATCCACCTCAATTCTAG
ATCCAGAACAGTTCCTCACTGTCACTGACAGTATGCTCTCCATCATCGAA
AGATCTAAGGAAGCATCTTTGAAGCCAGCCCGCGATATTATTAAAAGGCT
GCGAGCGCGCAAGTTGTACAGATTTGTTGAGGAGGTGCTCTTGCCAGCGG
GAATATGTCGAAAGATCACCTCCGCTGAAATCACGACATGCCAAGATGCT
GCGGGAACAGGGGTCACATTGAGTCCAGAGGATGTCTACGTTGCTCACGT
AACTCTCAATTTCGGAATGAAGGACAAAAACCCTGTGGACCGCGTCCTGT
TCTTCAAAGATTGGTACGTTCTTTCCAACCGCGCTTTTGCCTCAAAGTGT
TTGCATTCTCACGCGCTCCTTTTGCTTCCCACAGGGATGACATGAGTCCA
ACGCATATATCATCTGCCCAGGCTTCGTGTCTTCTCCCCGCCGTTTTCCA
GGAGCAAATTATCCGGATATATGTAAAAAGAGAAGAAAGCGACGACTCCA
ATCGCGTGAAAAAGGCCGTTTCGGTTGCCTTTCGGAACTTTATGAGACGC
CAGTCACTCGGAGCATCTCTGAACTCTCCGGTTCTGAGAAACGGAAATAG
GGAGCCAGCAGGAGTGGCGGGGGATTCACGCACGTCAGGGACCATTGAAG
CGCTTGCGAACGAAATAGGTGAGACGCAAGCGACCAGGGCTGCAAAGCGA
TGCAAACCTGAAGGCTCTGCACGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1298874..1300600+

>Gvermi7046.t1 ID=Gvermi7046.t1|Name=Gvermi7046.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1593bp|location=Sequence derived from alignment at ScGOVlb_24229:1298874..1300600+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAACTTATCAACCGCCTCGGAGCCAGATGCTTTTGACACCATCGA
CTCGCAGTCCATATCACCTTCGCAACTCCGCGTCAAAGTGATCAATGATT
CCATTCACGGCCATTTCGAGCTTCGTGACCCTATTCTTAAAGTGATGGAT
ACGCCTCACTTTCAGCGTCTCCGCGACCTCAAGCAGTTGGGTGCCGTCTA
CTACGTGTATCCCGGCGCCTCACACAACAGGTTTGAGCATTGCATCGGAG
TATCTCATCTTTCCGGCACCTTCGTACAAAAGCTGTACCAAAACTCGAGG
GACCCATGCGCTCGAATGCTATATGATGGCGAGCACCACTATAAACATGC
CCAAATGTTGGTGCAGCTCGCTGGCCTTTCCCATGACCTGGGACACGGTC
CGTTTAGTCACATGTTTGATCGCGCGTTTCTGCCCGCGGCTCTGGACGGG
CACGCCGACTCTCGCTGTCTTCCACTTCTCATGCACGAGGAGCGCAGCGT
ATCCTTGTTTGAACACTGTGTGGATGCTTTCAACATCGACTTGACACGCG
AAGATATTCGCACCGTAGGCCAACTCATTCGCGGACAAAGGGGCGCAGGT
ACTCTGGTTCCTCGCTTTCTATTCGACGTGGTGGCCAATTCCAATACCGG
CATTGATACGGACAAATTTGATTACTTGGCAAGAGATGTGTACAACATTG
GTTTACAGGGGGCGTACGGCTTTGACCATCGCCGACTGATCAACTTTGCA
AAGGTTATACAAGATGACATCTGCTTTCACCGCAAAGAAATTTTGAACGT
CTACCATCTCTTTCTCACTCGCTTTCAGTTGCACCGCACTGTTTACTACC
ATCGAGCCGCATTGAGTATCGATGCCATGATTTCAGATGCTTTTCTTCAC
GCCGACAGTAGTTTACGCTTATCCACCTCAATTCTAGATCCAGAACAGTT
CCTCACTGTCACTGACAGTATGCTCTCCATCATCGAAAGATCTAAGGAAG
CATCTTTGAAGCCAGCCCGCGATATTATTAAAAGGCTGCGAGCGCGCAAG
TTGTACAGATTTGTTGAGGAGGTGCTCTTGCCAGCGGGAATATGTCGAAA
GATCACCTCCGCTGAAATCACGACATGCCAAGATGCTGCGGGAACAGGGG
TCACATTGAGTCCAGAGGATGTCTACGTTGCTCACGTAACTCTCAATTTC
GGAATGAAGGACAAAAACCCTGTGGACCGCGTCCTGTTCTTCAAAGATTG
GGATGACATGAGTCCAACGCATATATCATCTGCCCAGGCTTCGTGTCTTC
TCCCCGCCGTTTTCCAGGAGCAAATTATCCGGATATATGTAAAAAGAGAA
GAAAGCGACGACTCCAATCGCGTGAAAAAGGCCGTTTCGGTTGCCTTTCG
GAACTTTATGAGACGCCAGTCACTCGGAGCATCTCTGAACTCTCCGGTTC
TGAGAAACGGAAATAGGGAGCCAGCAGGAGTGGCGGGGGATTCACGCACG
TCAGGGACCATTGAAGCGCTTGCGAACGAAATAGGTGAGACGCAAGCGAC
CAGGGCTGCAAAGCGATGCAAACCTGAAGGCTCTGCACGTTGA
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