Gvermi7045.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7045.t1
Unique NameGvermi7045.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length16
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1264758..1264910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7045Gvermi7045Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1264758..1264910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7045.t1Gvermi7045.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1264758..1264910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7045.t1.CDS1Gvermi7045.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1264758..1264787 +
Gvermi7045.t1.CDS2Gvermi7045.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1264893..1264910 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7045.t1.exon1Gvermi7045.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1264758..1264787 +
Gvermi7045.t1.exon2Gvermi7045.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1264893..1264910 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7045.t1.intron1Gvermi7045.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1264788..1264892 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7045.t1.stop1Gvermi7045.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1264908..1264910 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7045.t1 ID=Gvermi7045.t1|Name=Gvermi7045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=16bp
KRIVFHLPFQLSDIS*
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spliced messenger RNA

>Gvermi7045.t1 ID=Gvermi7045.t1|Name=Gvermi7045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=48bp|location=Sequence derived from alignment at ScGOVlb_24229:1264758..1264910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
AAGCGTATTGTTTTCCATCTTCCCTTCCAGCTTTCGGACATAAGTTGA
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protein sequence of Gvermi7045.t1

>Gvermi7045.t1 ID=Gvermi7045.t1|Name=Gvermi7045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=16bp
KRIVFHLPFQLSDIS*
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mRNA from alignment at ScGOVlb_24229:1264758..1264910+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7045.t1 ID=Gvermi7045.t1|Name=Gvermi7045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=153bp|location=Sequence derived from alignment at ScGOVlb_24229:1264758..1264910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AAGCGTATTGTTTTCCATCTTCCCTTCCAGGTATGGGTTACGGCATCTTT
CTTAGATGCTCCAAACAACTGCTGTGCATCAGTTTCTATTCTCGTTCGGG
CTGTCAACCTAACTTCCGCGATGGCATCACGATAGCTTTCGGACATAAGT
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1264758..1264910+

>Gvermi7045.t1 ID=Gvermi7045.t1|Name=Gvermi7045.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=48bp|location=Sequence derived from alignment at ScGOVlb_24229:1264758..1264910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AAGCGTATTGTTTTCCATCTTCCCTTCCAGCTTTCGGACATAAGTTGA
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