Gvermi7044.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7044.t1
Unique NameGvermi7044.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1243090..1244349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog69293.ENSGACP00000016938
Preferred nameRPS6KA3
PFAMsPkinase,Pkinase_C
Max annot lvl33208|Metazoa
KEGG koko:K04373
KEGG Pathwayko04010,ko04114,ko04150,ko04714,ko04720,ko04722,ko04914,ko04931,map04010,map04114,map04150,map04714,map04720,map04722,map04914,map04931
GOsGO:0001501,GO:0001558,GO:0002009,GO:0002165,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003002,GO:0003008,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004711,GO:0004857,GO:0004866,GO:0004869,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006417,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007528,GO:0007552,GO:0007560,GO:0007568,GO:0007610,GO:0007611,GO:0007612,GO:0007622,GO:0007623,GO:0007626,GO:0008150,GO:0008152,GO:0008219,GO:0008306,GO:0008340,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009996,GO:0010033,GO:0010259,GO:0010453,GO:0010454,GO:0010466,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010648,GO:0010721,GO:0010941,GO:0010951,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030162,GO:0030234,GO:0030307,GO:0030414,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031349,GO:0031594,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032496,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0033157,GO:0033554,GO:0033993,GO:0034248,GO:0035106,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0036477,GO:0040008,GO:0042221,GO:0042306,GO:0042308,GO:0042659,GO:0042682,GO:0042683,GO:0042981,GO:0043025,GO:0043027,GO:0043028,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043204,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0043555,GO:0043620,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045088,GO:0045089,GO:0045202,GO:0045475,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045861,GO:0045893,GO:0045927,GO:0045935,GO:0045944,GO:0046532,GO:0046533,GO:0046578,GO:0046580,GO:0046822,GO:0046823,GO:0048070,GO:0048086,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050808,GO:0050877,GO:0050890,GO:0050896,GO:0050932,GO:0050941,GO:0051049,GO:0051051,GO:0051056,GO:0051058,GO:0051093,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051223,GO:0051224,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051961,GO:0052547,GO:0052548,GO:0060255,GO:0060284,GO:0060341,GO:0060429,GO:0060548,GO:0060562,GO:0061134,GO:0061135,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090087,GO:0090317,GO:0097458,GO:0098772,GO:0098793,GO:0140096,GO:1900180,GO:1900181,GO:1901564,GO:1901700,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1903827,GO:1903828,GO:1904396,GO:1904589,GO:1904590,GO:1904950,GO:2000026,GO:2000027,GO:2000112,GO:2000116,GO:2000117,GO:2001141
Evalue1.48e-27
EggNOG OGsKOG0603@1|root,KOG0603@2759|Eukaryota,3AMZM@33154|Opisthokonta,3BAGS@33208|Metazoa,3CRGH@33213|Bilateria,481WS@7711|Chordata,492W7@7742|Vertebrata,49VZ6@7898|Actinopterygii
EC2.7.11.1
DescriptionRibosomal protein S6 kinase
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7044Gvermi7044Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1243090..1244349 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7044.t1.stop1Gvermi7044.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1243090..1243092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7044.t1.CDS1Gvermi7044.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1243090..1244349 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7044.t1.exon1Gvermi7044.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1243090..1244349 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7044.t1.start1Gvermi7044.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1244347..1244349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7044.t1Gvermi7044.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1243090..1244349 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7044.t1 ID=Gvermi7044.t1|Name=Gvermi7044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp
MVKFFSRTSSPLSLETAPISPLSTPPQSPTHCPPRRERLRHGAPPFFEGW
ANIRVLPSRKAQLRYCTLSGPYLRYSATPGHPILGGCITVYGAQVSSEEF
PTVRICLRTSQARLYIYAESRQDHVQFFQQLVSASNRSLTSVYKFRNDLR
DSGLGRCSAAVDLHSGLSVCVKVTTKAQRTASQVAQAMNEAVILLCMPDH
PNIVPIVDVYESARTLYLVTDYADANTLTEVVQYRGMLCEADVATIVSGL
LRALVHMQKAQIVHRLICPDNLLLLPDDENNTVPVLHNFEYAVVAADIED
NTSMLHCYTPDGPLSLSQLAYIAPEIARGQVGDFQQDVWSVGILMHFLLV
GCTPFDDNLSSLDNLTNIIASTRGKPTFSGALWGGVTSGAKHLCACLLHS
NAKHRVRASEALLHPWLSL*
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spliced messenger RNA

>Gvermi7044.t1 ID=Gvermi7044.t1|Name=Gvermi7044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_24229:1243090..1244349- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAGTTTTTCTCCCGTACTTCATCCCCCCTGTCGCTCGAAACCGC
CCCCATCTCTCCCCTCAGCACCCCCCCCCAATCCCCAACTCACTGCCCGC
CGCGCAGGGAGCGTCTCCGCCATGGCGCTCCCCCGTTCTTCGAGGGCTGG
GCAAATATCAGAGTTTTGCCCTCCAGAAAGGCGCAGCTGCGGTACTGCAC
CTTATCAGGCCCCTATCTAAGGTACTCGGCAACCCCCGGGCACCCCATCC
TTGGCGGATGCATCACCGTTTACGGCGCCCAGGTGTCGAGCGAGGAATTC
CCCACTGTCCGCATTTGCCTGAGGACTTCCCAGGCTCGACTGTACATATA
CGCCGAATCGAGACAGGATCATGTTCAGTTCTTCCAACAGCTGGTCTCGG
CTTCCAACCGCAGCCTCACCAGCGTGTACAAGTTCCGCAACGATTTGCGC
GACTCCGGTTTGGGGCGGTGTAGTGCCGCTGTTGATTTGCACTCCGGACT
CTCTGTTTGTGTCAAGGTCACGACCAAGGCGCAGCGCACCGCTTCGCAAG
TGGCGCAAGCCATGAACGAAGCGGTCATCCTGCTCTGCATGCCGGATCAC
CCCAACATCGTGCCTATAGTCGACGTGTACGAGAGTGCACGCACGTTGTA
CCTCGTCACCGACTACGCTGACGCAAACACCCTCACCGAGGTTGTGCAGT
ACAGGGGAATGCTGTGCGAGGCCGATGTGGCTACCATCGTATCCGGTTTA
CTCCGTGCGTTGGTTCACATGCAAAAGGCTCAAATCGTTCACAGACTCAT
CTGCCCGGACAACCTGTTGTTGCTACCAGACGATGAAAACAACACCGTTC
CCGTATTACACAACTTTGAGTACGCCGTGGTGGCCGCCGATATCGAGGAT
AACACAAGCATGTTGCACTGCTACACACCGGACGGACCTTTATCATTATC
GCAGCTGGCATACATCGCGCCGGAGATTGCGCGCGGTCAAGTCGGCGACT
TTCAACAAGACGTGTGGTCTGTCGGCATTCTCATGCACTTCCTGCTAGTT
GGCTGCACTCCATTTGACGACAATCTGTCAAGTCTGGATAATCTCACCAA
CATCATTGCGTCTACAAGGGGAAAACCTACTTTTTCGGGCGCGCTTTGGG
GTGGCGTCACTTCTGGCGCCAAGCACCTTTGTGCTTGTTTGTTACATTCG
AATGCCAAACACCGTGTTCGCGCGTCTGAGGCACTGCTCCATCCTTGGCT
TAGCTTGTAG
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protein sequence of Gvermi7044.t1

>Gvermi7044.t1 ID=Gvermi7044.t1|Name=Gvermi7044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=420bp
MVKFFSRTSSPLSLETAPISPLSTPPQSPTHCPPRRERLRHGAPPFFEGW
ANIRVLPSRKAQLRYCTLSGPYLRYSATPGHPILGGCITVYGAQVSSEEF
PTVRICLRTSQARLYIYAESRQDHVQFFQQLVSASNRSLTSVYKFRNDLR
DSGLGRCSAAVDLHSGLSVCVKVTTKAQRTASQVAQAMNEAVILLCMPDH
PNIVPIVDVYESARTLYLVTDYADANTLTEVVQYRGMLCEADVATIVSGL
LRALVHMQKAQIVHRLICPDNLLLLPDDENNTVPVLHNFEYAVVAADIED
NTSMLHCYTPDGPLSLSQLAYIAPEIARGQVGDFQQDVWSVGILMHFLLV
GCTPFDDNLSSLDNLTNIIASTRGKPTFSGALWGGVTSGAKHLCACLLHS
NAKHRVRASEALLHPWLSL*
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mRNA from alignment at ScGOVlb_24229:1243090..1244349-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7044.t1 ID=Gvermi7044.t1|Name=Gvermi7044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_24229:1243090..1244349- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCAAGTTTTTCTCCCGTACTTCATCCCCCCTGTCGCTCGAAACCGC
CCCCATCTCTCCCCTCAGCACCCCCCCCCAATCCCCAACTCACTGCCCGC
CGCGCAGGGAGCGTCTCCGCCATGGCGCTCCCCCGTTCTTCGAGGGCTGG
GCAAATATCAGAGTTTTGCCCTCCAGAAAGGCGCAGCTGCGGTACTGCAC
CTTATCAGGCCCCTATCTAAGGTACTCGGCAACCCCCGGGCACCCCATCC
TTGGCGGATGCATCACCGTTTACGGCGCCCAGGTGTCGAGCGAGGAATTC
CCCACTGTCCGCATTTGCCTGAGGACTTCCCAGGCTCGACTGTACATATA
CGCCGAATCGAGACAGGATCATGTTCAGTTCTTCCAACAGCTGGTCTCGG
CTTCCAACCGCAGCCTCACCAGCGTGTACAAGTTCCGCAACGATTTGCGC
GACTCCGGTTTGGGGCGGTGTAGTGCCGCTGTTGATTTGCACTCCGGACT
CTCTGTTTGTGTCAAGGTCACGACCAAGGCGCAGCGCACCGCTTCGCAAG
TGGCGCAAGCCATGAACGAAGCGGTCATCCTGCTCTGCATGCCGGATCAC
CCCAACATCGTGCCTATAGTCGACGTGTACGAGAGTGCACGCACGTTGTA
CCTCGTCACCGACTACGCTGACGCAAACACCCTCACCGAGGTTGTGCAGT
ACAGGGGAATGCTGTGCGAGGCCGATGTGGCTACCATCGTATCCGGTTTA
CTCCGTGCGTTGGTTCACATGCAAAAGGCTCAAATCGTTCACAGACTCAT
CTGCCCGGACAACCTGTTGTTGCTACCAGACGATGAAAACAACACCGTTC
CCGTATTACACAACTTTGAGTACGCCGTGGTGGCCGCCGATATCGAGGAT
AACACAAGCATGTTGCACTGCTACACACCGGACGGACCTTTATCATTATC
GCAGCTGGCATACATCGCGCCGGAGATTGCGCGCGGTCAAGTCGGCGACT
TTCAACAAGACGTGTGGTCTGTCGGCATTCTCATGCACTTCCTGCTAGTT
GGCTGCACTCCATTTGACGACAATCTGTCAAGTCTGGATAATCTCACCAA
CATCATTGCGTCTACAAGGGGAAAACCTACTTTTTCGGGCGCGCTTTGGG
GTGGCGTCACTTCTGGCGCCAAGCACCTTTGTGCTTGTTTGTTACATTCG
AATGCCAAACACCGTGTTCGCGCGTCTGAGGCACTGCTCCATCCTTGGCT
TAGCTTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1243090..1244349-

>Gvermi7044.t1 ID=Gvermi7044.t1|Name=Gvermi7044.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1260bp|location=Sequence derived from alignment at ScGOVlb_24229:1243090..1244349- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCAAGTTTTTCTCCCGTACTTCATCCCCCCTGTCGCTCGAAACCGC
CCCCATCTCTCCCCTCAGCACCCCCCCCCAATCCCCAACTCACTGCCCGC
CGCGCAGGGAGCGTCTCCGCCATGGCGCTCCCCCGTTCTTCGAGGGCTGG
GCAAATATCAGAGTTTTGCCCTCCAGAAAGGCGCAGCTGCGGTACTGCAC
CTTATCAGGCCCCTATCTAAGGTACTCGGCAACCCCCGGGCACCCCATCC
TTGGCGGATGCATCACCGTTTACGGCGCCCAGGTGTCGAGCGAGGAATTC
CCCACTGTCCGCATTTGCCTGAGGACTTCCCAGGCTCGACTGTACATATA
CGCCGAATCGAGACAGGATCATGTTCAGTTCTTCCAACAGCTGGTCTCGG
CTTCCAACCGCAGCCTCACCAGCGTGTACAAGTTCCGCAACGATTTGCGC
GACTCCGGTTTGGGGCGGTGTAGTGCCGCTGTTGATTTGCACTCCGGACT
CTCTGTTTGTGTCAAGGTCACGACCAAGGCGCAGCGCACCGCTTCGCAAG
TGGCGCAAGCCATGAACGAAGCGGTCATCCTGCTCTGCATGCCGGATCAC
CCCAACATCGTGCCTATAGTCGACGTGTACGAGAGTGCACGCACGTTGTA
CCTCGTCACCGACTACGCTGACGCAAACACCCTCACCGAGGTTGTGCAGT
ACAGGGGAATGCTGTGCGAGGCCGATGTGGCTACCATCGTATCCGGTTTA
CTCCGTGCGTTGGTTCACATGCAAAAGGCTCAAATCGTTCACAGACTCAT
CTGCCCGGACAACCTGTTGTTGCTACCAGACGATGAAAACAACACCGTTC
CCGTATTACACAACTTTGAGTACGCCGTGGTGGCCGCCGATATCGAGGAT
AACACAAGCATGTTGCACTGCTACACACCGGACGGACCTTTATCATTATC
GCAGCTGGCATACATCGCGCCGGAGATTGCGCGCGGTCAAGTCGGCGACT
TTCAACAAGACGTGTGGTCTGTCGGCATTCTCATGCACTTCCTGCTAGTT
GGCTGCACTCCATTTGACGACAATCTGTCAAGTCTGGATAATCTCACCAA
CATCATTGCGTCTACAAGGGGAAAACCTACTTTTTCGGGCGCGCTTTGGG
GTGGCGTCACTTCTGGCGCCAAGCACCTTTGTGCTTGTTTGTTACATTCG
AATGCCAAACACCGTGTTCGCGCGTCTGAGGCACTGCTCCATCCTTGGCT
TAGCTTGTAG
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