Gvermi7032.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7032.t1
Unique Name	Gvermi7032.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1037258..1039390 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	263815.XP_007872647.1
Preferred name	PRP43
PFAMs	DEAD,HA2,Helicase_C,OB_NTP_bind
Max annot lvl	4751\|Fungi
KEGG ko	ko:K12820
KEGG Pathway	ko03040,map03040
GOs	GO:0000166,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022411,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032988,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042274,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Evalue	5.68e-289
EggNOG OGs	COG1643@1\|root,KOG0925@2759\|Eukaryota,3API8@33154\|Opisthokonta,3NVMW@4751\|Fungi,3QJMU@4890\|Ascomycota,3MC5Y@451866\|Taphrinomycotina
EC	3.6.4.13
Description	ATP-dependent RNA helicase prp43
COG category	A
BRITE	ko00000,ko00001,ko01000,ko03009,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7032	Gvermi7032	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1037258..1039390 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7032.t1.stop1	Gvermi7032.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1037258..1037260 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7032.t1.CDS1	Gvermi7032.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1037258..1039390 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7032.t1.exon1	Gvermi7032.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1037258..1039390 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7032.t1.start1	Gvermi7032.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1039388..1039390 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7032.t1	Gvermi7032.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1037258..1039390 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1037258..1039390-
coding sequence from alignment at ScGOVlb_24229:1037258..1039390-

mRNA sequence

>Gvermi7032.t1 ID=Gvermi7032.t1|Name=Gvermi7032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=711bp
MSGTNRRLRVDLGDGSLNPWTKSSYSEKYHKILKQRQDLPVYEARQLILD
ALDKSRVVVLEGETGSGKTTQVPQFLVESGYTKHGKVVACTQPRRVAAIS
VAKRVAEEMDVRLGAHVGYSIRFEDRTSKDTILKYLTDGMLLREAMHDHD
LSQYSVIILDEAHERTLSTDVLMGLIKSIIKRRSDLKVIVMSATLNAEQF
QNYFDNAPLLSVPGRMYPVAIHYSQSPEHDYLEAAIRVVTDICRSEPPGD
ILVFLTGEEEIEEACRRLSSITASRERVDGPVQVLPLYGSLPTDRQQLVF
GPPPRPLYSGGRPGRKVICATNIAETSLTIDGIVYVVDSGFSKQKLYNPR
VRVESLLVQGISRASAKQRSGRAGRTRPGKCFRLYTEESFYKELSETTHP
EILRSNLGNVVLQLKKLGIDDLVHFDFMDPPAPETMMRALELLNYLGALN
DEGDLTEFGSTMSEFPLDPESAAALIHSPEFNCSEEVVSIVAMISSARNC
FVRPRRQGKKRHGKQQNPHREFQHSDGDHLTLLKVYHAYLECKARSQRKD
TLLRWCQENLLNYRSLVMADNSRSQIANIMRKCGLSLVSTSSDDRKHSEN
IRKALLKGFFMQVASKSFRKGKSYLTVKDQQSVLLHPSCVLGGVPQWVMY
NEFVMTNTNYIRTCSQINGSWLLSLAPIYYDLSNFPDGEAKRELERMSAR
TQRKRSRVDI*

spliced messenger RNA

>Gvermi7032.t1 ID=Gvermi7032.t1|Name=Gvermi7032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at ScGOVlb_24229:1037258..1039390- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGTACCAACCGACGTCTACGTGTCGATCTGGGGGATGGCTCTCT
GAATCCATGGACAAAGTCGTCCTACTCGGAGAAGTATCACAAAATCCTTA
AACAGCGACAAGACTTGCCAGTATATGAGGCTAGGCAACTTATTCTTGAT
GCGCTTGACAAATCTCGGGTCGTCGTTTTGGAAGGAGAAACTGGCTCCGG
AAAGACGACCCAGGTACCGCAATTCTTAGTTGAGAGCGGATACACTAAAC
ATGGAAAGGTCGTTGCGTGCACGCAGCCCCGTCGTGTCGCTGCCATATCT
GTCGCTAAACGTGTTGCGGAAGAAATGGACGTCAGACTTGGAGCCCACGT
TGGATACTCTATTCGTTTCGAAGACCGAACATCGAAGGATACAATTCTAA
AATATCTAACCGACGGTATGCTTCTCCGTGAAGCAATGCATGACCATGAC
CTTTCTCAATATAGCGTTATAATCCTTGATGAAGCGCATGAAAGAACTCT
TAGCACTGATGTGTTAATGGGTTTAATTAAATCGATAATCAAGCGCAGGA
GCGATCTCAAGGTCATCGTCATGTCCGCAACCCTGAACGCTGAGCAATTT
CAGAACTACTTTGACAATGCCCCTTTGCTTAGCGTGCCTGGGCGAATGTA
CCCCGTAGCAATCCACTACTCCCAATCTCCGGAACATGATTACTTAGAAG
CTGCGATTCGAGTTGTCACGGATATATGCCGTTCCGAACCACCCGGTGAT
ATTCTAGTGTTCTTGACAGGCGAAGAAGAAATCGAGGAGGCGTGTCGTCG
CTTATCGAGCATTACTGCATCTCGTGAAAGGGTCGACGGGCCTGTCCAGG
TGCTCCCCTTGTACGGTTCACTTCCTACCGATCGGCAACAGCTTGTATTT
GGTCCTCCCCCGCGACCGCTCTATTCCGGAGGGCGACCAGGTCGAAAGGT
AATATGTGCCACAAACATTGCCGAGACTTCGCTTACAATTGATGGGATCG
TTTATGTCGTCGATTCGGGTTTCTCAAAGCAAAAGTTGTATAATCCAAGA
GTTCGAGTGGAGAGTTTGCTAGTACAGGGCATATCGCGTGCTTCAGCGAA
GCAAAGATCAGGCCGTGCTGGTCGTACTCGCCCGGGCAAATGCTTTCGTC
TGTATACGGAAGAATCATTCTACAAAGAACTTTCTGAGACTACCCATCCT
GAGATTTTGCGCTCCAATCTCGGAAACGTTGTTTTACAGTTGAAAAAGCT
TGGCATCGACGATTTGGTGCATTTTGATTTCATGGATCCCCCCGCCCCGG
AGACTATGATGAGAGCTTTAGAGCTTTTGAACTATCTTGGAGCTCTTAAT
GACGAAGGAGACTTGACAGAATTTGGGAGCACTATGTCGGAATTTCCTTT
GGATCCAGAGAGCGCAGCCGCTCTCATTCATTCCCCAGAGTTTAATTGCT
CGGAAGAAGTGGTTAGCATCGTGGCGATGATATCTTCTGCACGGAATTGC
TTCGTGCGCCCTCGTCGGCAAGGAAAAAAGCGACACGGTAAACAGCAGAA
CCCTCACAGAGAATTCCAACATTCAGATGGTGATCATCTTACGCTATTGA
AGGTTTACCATGCATATCTTGAGTGCAAGGCCAGATCTCAACGAAAAGAC
ACTTTGCTTCGTTGGTGTCAAGAAAATCTTCTCAACTACCGGTCTCTCGT
AATGGCAGACAACAGCCGGTCACAGATTGCGAATATAATGAGAAAATGTG
GCTTGTCTCTTGTCTCTACATCAAGTGATGATCGTAAACATTCGGAAAAT
ATACGAAAGGCTTTGTTGAAAGGCTTCTTCATGCAAGTCGCCTCGAAATC
ATTTCGAAAGGGGAAATCGTATCTTACTGTGAAAGACCAGCAAAGTGTTT
TATTGCATCCTTCTTGTGTGCTTGGGGGGGTACCGCAATGGGTTATGTAC
AATGAATTTGTCATGACGAACACCAACTATATTAGGACATGCAGTCAAAT
CAATGGCTCGTGGCTCTTATCGTTAGCGCCGATATACTACGACTTGTCCA
ATTTTCCAGACGGAGAGGCCAAGAGGGAACTGGAACGCATGTCTGCGAGA
ACGCAAAGGAAGCGGAGCAGAGTAGACATATGA

protein sequence of Gvermi7032.t1

>Gvermi7032.t1 ID=Gvermi7032.t1|Name=Gvermi7032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=711bp
MSGTNRRLRVDLGDGSLNPWTKSSYSEKYHKILKQRQDLPVYEARQLILD
ALDKSRVVVLEGETGSGKTTQVPQFLVESGYTKHGKVVACTQPRRVAAIS
VAKRVAEEMDVRLGAHVGYSIRFEDRTSKDTILKYLTDGMLLREAMHDHD
LSQYSVIILDEAHERTLSTDVLMGLIKSIIKRRSDLKVIVMSATLNAEQF
QNYFDNAPLLSVPGRMYPVAIHYSQSPEHDYLEAAIRVVTDICRSEPPGD
ILVFLTGEEEIEEACRRLSSITASRERVDGPVQVLPLYGSLPTDRQQLVF
GPPPRPLYSGGRPGRKVICATNIAETSLTIDGIVYVVDSGFSKQKLYNPR
VRVESLLVQGISRASAKQRSGRAGRTRPGKCFRLYTEESFYKELSETTHP
EILRSNLGNVVLQLKKLGIDDLVHFDFMDPPAPETMMRALELLNYLGALN
DEGDLTEFGSTMSEFPLDPESAAALIHSPEFNCSEEVVSIVAMISSARNC
FVRPRRQGKKRHGKQQNPHREFQHSDGDHLTLLKVYHAYLECKARSQRKD
TLLRWCQENLLNYRSLVMADNSRSQIANIMRKCGLSLVSTSSDDRKHSEN
IRKALLKGFFMQVASKSFRKGKSYLTVKDQQSVLLHPSCVLGGVPQWVMY
NEFVMTNTNYIRTCSQINGSWLLSLAPIYYDLSNFPDGEAKRELERMSAR
TQRKRSRVDI*

mRNA from alignment at ScGOVlb_24229:1037258..1039390-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7032.t1 ID=Gvermi7032.t1|Name=Gvermi7032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2133bp|location=Sequence derived from alignment at ScGOVlb_24229:1037258..1039390- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGTACCAACCGACGTCTACGTGTCGATCTGGGGGATGGCTCTCT
GAATCCATGGACAAAGTCGTCCTACTCGGAGAAGTATCACAAAATCCTTA
AACAGCGACAAGACTTGCCAGTATATGAGGCTAGGCAACTTATTCTTGAT
GCGCTTGACAAATCTCGGGTCGTCGTTTTGGAAGGAGAAACTGGCTCCGG
AAAGACGACCCAGGTACCGCAATTCTTAGTTGAGAGCGGATACACTAAAC
ATGGAAAGGTCGTTGCGTGCACGCAGCCCCGTCGTGTCGCTGCCATATCT
GTCGCTAAACGTGTTGCGGAAGAAATGGACGTCAGACTTGGAGCCCACGT
TGGATACTCTATTCGTTTCGAAGACCGAACATCGAAGGATACAATTCTAA
AATATCTAACCGACGGTATGCTTCTCCGTGAAGCAATGCATGACCATGAC
CTTTCTCAATATAGCGTTATAATCCTTGATGAAGCGCATGAAAGAACTCT
TAGCACTGATGTGTTAATGGGTTTAATTAAATCGATAATCAAGCGCAGGA
GCGATCTCAAGGTCATCGTCATGTCCGCAACCCTGAACGCTGAGCAATTT
CAGAACTACTTTGACAATGCCCCTTTGCTTAGCGTGCCTGGGCGAATGTA
CCCCGTAGCAATCCACTACTCCCAATCTCCGGAACATGATTACTTAGAAG
CTGCGATTCGAGTTGTCACGGATATATGCCGTTCCGAACCACCCGGTGAT
ATTCTAGTGTTCTTGACAGGCGAAGAAGAAATCGAGGAGGCGTGTCGTCG
CTTATCGAGCATTACTGCATCTCGTGAAAGGGTCGACGGGCCTGTCCAGG
TGCTCCCCTTGTACGGTTCACTTCCTACCGATCGGCAACAGCTTGTATTT
GGTCCTCCCCCGCGACCGCTCTATTCCGGAGGGCGACCAGGTCGAAAGGT
AATATGTGCCACAAACATTGCCGAGACTTCGCTTACAATTGATGGGATCG
TTTATGTCGTCGATTCGGGTTTCTCAAAGCAAAAGTTGTATAATCCAAGA
GTTCGAGTGGAGAGTTTGCTAGTACAGGGCATATCGCGTGCTTCAGCGAA
GCAAAGATCAGGCCGTGCTGGTCGTACTCGCCCGGGCAAATGCTTTCGTC
TGTATACGGAAGAATCATTCTACAAAGAACTTTCTGAGACTACCCATCCT
GAGATTTTGCGCTCCAATCTCGGAAACGTTGTTTTACAGTTGAAAAAGCT
TGGCATCGACGATTTGGTGCATTTTGATTTCATGGATCCCCCCGCCCCGG
AGACTATGATGAGAGCTTTAGAGCTTTTGAACTATCTTGGAGCTCTTAAT
GACGAAGGAGACTTGACAGAATTTGGGAGCACTATGTCGGAATTTCCTTT
GGATCCAGAGAGCGCAGCCGCTCTCATTCATTCCCCAGAGTTTAATTGCT
CGGAAGAAGTGGTTAGCATCGTGGCGATGATATCTTCTGCACGGAATTGC
TTCGTGCGCCCTCGTCGGCAAGGAAAAAAGCGACACGGTAAACAGCAGAA
CCCTCACAGAGAATTCCAACATTCAGATGGTGATCATCTTACGCTATTGA
AGGTTTACCATGCATATCTTGAGTGCAAGGCCAGATCTCAACGAAAAGAC
ACTTTGCTTCGTTGGTGTCAAGAAAATCTTCTCAACTACCGGTCTCTCGT
AATGGCAGACAACAGCCGGTCACAGATTGCGAATATAATGAGAAAATGTG
GCTTGTCTCTTGTCTCTACATCAAGTGATGATCGTAAACATTCGGAAAAT
ATACGAAAGGCTTTGTTGAAAGGCTTCTTCATGCAAGTCGCCTCGAAATC
ATTTCGAAAGGGGAAATCGTATCTTACTGTGAAAGACCAGCAAAGTGTTT
TATTGCATCCTTCTTGTGTGCTTGGGGGGGTACCGCAATGGGTTATGTAC
AATGAATTTGTCATGACGAACACCAACTATATTAGGACATGCAGTCAAAT
CAATGGCTCGTGGCTCTTATCGTTAGCGCCGATATACTACGACTTGTCCA
ATTTTCCAGACGGAGAGGCCAAGAGGGAACTGGAACGCATGTCTGCGAGA
ACGCAAAGGAAGCGGAGCAGAGTAGACATATGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:1037258..1039390-

>Gvermi7032.t1 ID=Gvermi7032.t1|Name=Gvermi7032.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2133bp|location=Sequence derived from alignment at ScGOVlb_24229:1037258..1039390- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGTACCAACCGACGTCTACGTGTCGATCTGGGGGATGGCTCTCT
GAATCCATGGACAAAGTCGTCCTACTCGGAGAAGTATCACAAAATCCTTA
AACAGCGACAAGACTTGCCAGTATATGAGGCTAGGCAACTTATTCTTGAT
GCGCTTGACAAATCTCGGGTCGTCGTTTTGGAAGGAGAAACTGGCTCCGG
AAAGACGACCCAGGTACCGCAATTCTTAGTTGAGAGCGGATACACTAAAC
ATGGAAAGGTCGTTGCGTGCACGCAGCCCCGTCGTGTCGCTGCCATATCT
GTCGCTAAACGTGTTGCGGAAGAAATGGACGTCAGACTTGGAGCCCACGT
TGGATACTCTATTCGTTTCGAAGACCGAACATCGAAGGATACAATTCTAA
AATATCTAACCGACGGTATGCTTCTCCGTGAAGCAATGCATGACCATGAC
CTTTCTCAATATAGCGTTATAATCCTTGATGAAGCGCATGAAAGAACTCT
TAGCACTGATGTGTTAATGGGTTTAATTAAATCGATAATCAAGCGCAGGA
GCGATCTCAAGGTCATCGTCATGTCCGCAACCCTGAACGCTGAGCAATTT
CAGAACTACTTTGACAATGCCCCTTTGCTTAGCGTGCCTGGGCGAATGTA
CCCCGTAGCAATCCACTACTCCCAATCTCCGGAACATGATTACTTAGAAG
CTGCGATTCGAGTTGTCACGGATATATGCCGTTCCGAACCACCCGGTGAT
ATTCTAGTGTTCTTGACAGGCGAAGAAGAAATCGAGGAGGCGTGTCGTCG
CTTATCGAGCATTACTGCATCTCGTGAAAGGGTCGACGGGCCTGTCCAGG
TGCTCCCCTTGTACGGTTCACTTCCTACCGATCGGCAACAGCTTGTATTT
GGTCCTCCCCCGCGACCGCTCTATTCCGGAGGGCGACCAGGTCGAAAGGT
AATATGTGCCACAAACATTGCCGAGACTTCGCTTACAATTGATGGGATCG
TTTATGTCGTCGATTCGGGTTTCTCAAAGCAAAAGTTGTATAATCCAAGA
GTTCGAGTGGAGAGTTTGCTAGTACAGGGCATATCGCGTGCTTCAGCGAA
GCAAAGATCAGGCCGTGCTGGTCGTACTCGCCCGGGCAAATGCTTTCGTC
TGTATACGGAAGAATCATTCTACAAAGAACTTTCTGAGACTACCCATCCT
GAGATTTTGCGCTCCAATCTCGGAAACGTTGTTTTACAGTTGAAAAAGCT
TGGCATCGACGATTTGGTGCATTTTGATTTCATGGATCCCCCCGCCCCGG
AGACTATGATGAGAGCTTTAGAGCTTTTGAACTATCTTGGAGCTCTTAAT
GACGAAGGAGACTTGACAGAATTTGGGAGCACTATGTCGGAATTTCCTTT
GGATCCAGAGAGCGCAGCCGCTCTCATTCATTCCCCAGAGTTTAATTGCT
CGGAAGAAGTGGTTAGCATCGTGGCGATGATATCTTCTGCACGGAATTGC
TTCGTGCGCCCTCGTCGGCAAGGAAAAAAGCGACACGGTAAACAGCAGAA
CCCTCACAGAGAATTCCAACATTCAGATGGTGATCATCTTACGCTATTGA
AGGTTTACCATGCATATCTTGAGTGCAAGGCCAGATCTCAACGAAAAGAC
ACTTTGCTTCGTTGGTGTCAAGAAAATCTTCTCAACTACCGGTCTCTCGT
AATGGCAGACAACAGCCGGTCACAGATTGCGAATATAATGAGAAAATGTG
GCTTGTCTCTTGTCTCTACATCAAGTGATGATCGTAAACATTCGGAAAAT
ATACGAAAGGCTTTGTTGAAAGGCTTCTTCATGCAAGTCGCCTCGAAATC
ATTTCGAAAGGGGAAATCGTATCTTACTGTGAAAGACCAGCAAAGTGTTT
TATTGCATCCTTCTTGTGTGCTTGGGGGGGTACCGCAATGGGTTATGTAC
AATGAATTTGTCATGACGAACACCAACTATATTAGGACATGCAGTCAAAT
CAATGGCTCGTGGCTCTTATCGTTAGCGCCGATATACTACGACTTGTCCA
ATTTTCCAGACGGAGAGGCCAAGAGGGAACTGGAACGCATGTCTGCGAGA
ACGCAAAGGAAGCGGAGCAGAGTAGACATATGA