Gvermi7029.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7029.t1
Unique NameGvermi7029.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1029884..1030948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010473051.1
PFAMsMethyltransf_21
Max annot lvl35493|Streptophyta
Evalue1.93e-12
EggNOG OGs2D0ER@1|root,2SDXZ@2759|Eukaryota,37XZB@33090|Viridiplantae,3GX61@35493|Streptophyta,3HW7P@3699|Brassicales
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7029Gvermi7029Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1029884..1030948 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7029.t1.stop1Gvermi7029.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1029884..1029886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7029.t1.CDS1Gvermi7029.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1029884..1030948 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7029.t1.exon1Gvermi7029.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1029884..1030948 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7029.t1.start1Gvermi7029.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1030946..1030948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7029.t1Gvermi7029.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1029884..1030948 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7029.t1 ID=Gvermi7029.t1|Name=Gvermi7029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=355bp
MKSLKNEPTQATTRRITENILKSFSKLSTSTLLVFRRKSRAVAVLVVIAC
TIMTIALVIHNDLLPTRGTEQMSCYSKSIVRSCDPNPSYGLGRSYDARVR
GVNVSYAAWTEDKHFQHEVVSLRTHEAVRMMSKLKRAATLLDVGANMGKV
TFPTLAMAQTHTVIAVEPVAFNIDHLCMTANLNGWLGHAGFLLLKAALSD
KEGSMNIFVPEGREDNAALNEQAATANVGGKDRGERVNLLTGDKLLRDGG
FKPDLIKIDTQGHELFVLRGLRGYMAGAKARELVIMAESDPKLMQKSGVN
PKDIYQLMVVELGYNAYCRPEIRVEDERFVVKGLPLSYEMYPPGGCRDIF
YYKS*
back to top

spliced messenger RNA

>Gvermi7029.t1 ID=Gvermi7029.t1|Name=Gvermi7029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_24229:1029884..1030948- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCATTGAAGAATGAACCAACTCAAGCAACAACTCGAAGAATCAC
CGAAAATATTCTCAAGTCCTTTTCAAAACTTTCAACATCGACATTGCTCG
TTTTTAGACGCAAATCGCGGGCTGTGGCCGTCTTGGTAGTTATTGCATGT
ACCATTATGACAATTGCTCTCGTAATCCACAACGATTTACTGCCGACCCG
TGGAACAGAACAGATGAGCTGCTATTCAAAATCCATAGTTCGTTCTTGTG
ATCCAAATCCATCGTATGGTTTGGGGCGATCATATGACGCTCGAGTCAGG
GGAGTTAATGTTTCATACGCTGCATGGACAGAGGACAAGCATTTTCAACA
CGAGGTAGTGTCTTTACGTACCCATGAGGCTGTGAGAATGATGAGCAAGC
TGAAAAGGGCAGCCACCCTCTTGGATGTCGGTGCAAATATGGGAAAAGTA
ACATTTCCCACCTTAGCCATGGCACAAACCCACACCGTGATAGCTGTTGA
ACCAGTGGCTTTCAATATCGACCATCTCTGCATGACAGCAAACTTGAATG
GTTGGCTAGGACATGCAGGATTTTTACTTCTCAAAGCTGCTCTGAGCGAC
AAGGAAGGCAGCATGAATATTTTCGTACCTGAAGGCCGAGAGGATAATGC
TGCATTGAATGAACAAGCTGCCACAGCTAATGTGGGCGGAAAAGATCGTG
GTGAAAGGGTGAACCTTCTCACTGGGGATAAATTACTGAGAGACGGTGGC
TTCAAACCGGATCTGATAAAAATAGACACGCAGGGGCACGAGCTGTTTGT
ACTCCGAGGATTACGGGGCTATATGGCTGGCGCGAAAGCACGAGAACTTG
TTATAATGGCCGAGAGTGATCCCAAATTAATGCAGAAGTCAGGCGTGAAC
CCGAAGGATATTTACCAGCTAATGGTGGTAGAGTTGGGGTACAATGCTTA
CTGCAGACCTGAAATTCGTGTCGAAGACGAACGATTCGTTGTGAAGGGAC
TGCCTTTAAGCTATGAGATGTATCCCCCCGGGGGTTGTCGCGATATATTC
TATTACAAATCTTGA
back to top

protein sequence of Gvermi7029.t1

>Gvermi7029.t1 ID=Gvermi7029.t1|Name=Gvermi7029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=355bp
MKSLKNEPTQATTRRITENILKSFSKLSTSTLLVFRRKSRAVAVLVVIAC
TIMTIALVIHNDLLPTRGTEQMSCYSKSIVRSCDPNPSYGLGRSYDARVR
GVNVSYAAWTEDKHFQHEVVSLRTHEAVRMMSKLKRAATLLDVGANMGKV
TFPTLAMAQTHTVIAVEPVAFNIDHLCMTANLNGWLGHAGFLLLKAALSD
KEGSMNIFVPEGREDNAALNEQAATANVGGKDRGERVNLLTGDKLLRDGG
FKPDLIKIDTQGHELFVLRGLRGYMAGAKARELVIMAESDPKLMQKSGVN
PKDIYQLMVVELGYNAYCRPEIRVEDERFVVKGLPLSYEMYPPGGCRDIF
YYKS*
back to top

mRNA from alignment at ScGOVlb_24229:1029884..1030948-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7029.t1 ID=Gvermi7029.t1|Name=Gvermi7029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at ScGOVlb_24229:1029884..1030948- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCATTGAAGAATGAACCAACTCAAGCAACAACTCGAAGAATCAC
CGAAAATATTCTCAAGTCCTTTTCAAAACTTTCAACATCGACATTGCTCG
TTTTTAGACGCAAATCGCGGGCTGTGGCCGTCTTGGTAGTTATTGCATGT
ACCATTATGACAATTGCTCTCGTAATCCACAACGATTTACTGCCGACCCG
TGGAACAGAACAGATGAGCTGCTATTCAAAATCCATAGTTCGTTCTTGTG
ATCCAAATCCATCGTATGGTTTGGGGCGATCATATGACGCTCGAGTCAGG
GGAGTTAATGTTTCATACGCTGCATGGACAGAGGACAAGCATTTTCAACA
CGAGGTAGTGTCTTTACGTACCCATGAGGCTGTGAGAATGATGAGCAAGC
TGAAAAGGGCAGCCACCCTCTTGGATGTCGGTGCAAATATGGGAAAAGTA
ACATTTCCCACCTTAGCCATGGCACAAACCCACACCGTGATAGCTGTTGA
ACCAGTGGCTTTCAATATCGACCATCTCTGCATGACAGCAAACTTGAATG
GTTGGCTAGGACATGCAGGATTTTTACTTCTCAAAGCTGCTCTGAGCGAC
AAGGAAGGCAGCATGAATATTTTCGTACCTGAAGGCCGAGAGGATAATGC
TGCATTGAATGAACAAGCTGCCACAGCTAATGTGGGCGGAAAAGATCGTG
GTGAAAGGGTGAACCTTCTCACTGGGGATAAATTACTGAGAGACGGTGGC
TTCAAACCGGATCTGATAAAAATAGACACGCAGGGGCACGAGCTGTTTGT
ACTCCGAGGATTACGGGGCTATATGGCTGGCGCGAAAGCACGAGAACTTG
TTATAATGGCCGAGAGTGATCCCAAATTAATGCAGAAGTCAGGCGTGAAC
CCGAAGGATATTTACCAGCTAATGGTGGTAGAGTTGGGGTACAATGCTTA
CTGCAGACCTGAAATTCGTGTCGAAGACGAACGATTCGTTGTGAAGGGAC
TGCCTTTAAGCTATGAGATGTATCCCCCCGGGGGTTGTCGCGATATATTC
TATTACAAATCTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1029884..1030948-

>Gvermi7029.t1 ID=Gvermi7029.t1|Name=Gvermi7029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1065bp|location=Sequence derived from alignment at ScGOVlb_24229:1029884..1030948- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTCATTGAAGAATGAACCAACTCAAGCAACAACTCGAAGAATCAC
CGAAAATATTCTCAAGTCCTTTTCAAAACTTTCAACATCGACATTGCTCG
TTTTTAGACGCAAATCGCGGGCTGTGGCCGTCTTGGTAGTTATTGCATGT
ACCATTATGACAATTGCTCTCGTAATCCACAACGATTTACTGCCGACCCG
TGGAACAGAACAGATGAGCTGCTATTCAAAATCCATAGTTCGTTCTTGTG
ATCCAAATCCATCGTATGGTTTGGGGCGATCATATGACGCTCGAGTCAGG
GGAGTTAATGTTTCATACGCTGCATGGACAGAGGACAAGCATTTTCAACA
CGAGGTAGTGTCTTTACGTACCCATGAGGCTGTGAGAATGATGAGCAAGC
TGAAAAGGGCAGCCACCCTCTTGGATGTCGGTGCAAATATGGGAAAAGTA
ACATTTCCCACCTTAGCCATGGCACAAACCCACACCGTGATAGCTGTTGA
ACCAGTGGCTTTCAATATCGACCATCTCTGCATGACAGCAAACTTGAATG
GTTGGCTAGGACATGCAGGATTTTTACTTCTCAAAGCTGCTCTGAGCGAC
AAGGAAGGCAGCATGAATATTTTCGTACCTGAAGGCCGAGAGGATAATGC
TGCATTGAATGAACAAGCTGCCACAGCTAATGTGGGCGGAAAAGATCGTG
GTGAAAGGGTGAACCTTCTCACTGGGGATAAATTACTGAGAGACGGTGGC
TTCAAACCGGATCTGATAAAAATAGACACGCAGGGGCACGAGCTGTTTGT
ACTCCGAGGATTACGGGGCTATATGGCTGGCGCGAAAGCACGAGAACTTG
TTATAATGGCCGAGAGTGATCCCAAATTAATGCAGAAGTCAGGCGTGAAC
CCGAAGGATATTTACCAGCTAATGGTGGTAGAGTTGGGGTACAATGCTTA
CTGCAGACCTGAAATTCGTGTCGAAGACGAACGATTCGTTGTGAAGGGAC
TGCCTTTAAGCTATGAGATGTATCCCCCCGGGGGTTGTCGCGATATATTC
TATTACAAATCTTGA
back to top