Gvermi7027.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7027.t1
Unique NameGvermi7027.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:988431..989281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35720.XP_003657612.1
PFAMszf-RING_2,zf-rbx1,zinc_ribbon_9
Max annot lvl4751|Fungi
KEGG koko:K11982
Evalue1.21e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,38F90@33154|Opisthokonta,3Q31T@4751|Fungi,3RK42@4890|Ascomycota,21EYB@147550|Sordariomycetes,3UBMF@5139|Sordariales,3HEW7@35718|Chaetomiaceae
EC2.3.2.27
DescriptionRING-like zinc finger
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7027Gvermi7027Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 988431..989281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1Gvermi7027.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 988431..989281 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1.stop1Gvermi7027.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 988431..988433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1.CDS1Gvermi7027.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 988431..988689 -
Gvermi7027.t1.CDS2Gvermi7027.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 988764..989083 -
Gvermi7027.t1.CDS3Gvermi7027.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 989171..989281 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1.exon1Gvermi7027.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 988431..988689 -
Gvermi7027.t1.exon2Gvermi7027.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 988764..989083 -
Gvermi7027.t1.exon3Gvermi7027.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 989171..989281 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1.intron1Gvermi7027.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 988690..988763 -
Gvermi7027.t1.intron2Gvermi7027.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 989084..989170 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1.start1Gvermi7027.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 989279..989281 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7027.t1 ID=Gvermi7027.t1|Name=Gvermi7027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=230bp
MPLIPLIRHWSDHIATSLTQTELPYLEREKVTPSNMFYHPASLPEGRENG
TSLRRADRERLVFAYIPAQAPAIVRMQRLAKKSGISTQELDSVAPVSGYT
CEATGTSDPQANMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWA
TKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQRRTRGESGAFEL
AIVDEHNILASVSNVPPNRTSSTVVDESA*
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spliced messenger RNA

>Gvermi7027.t1 ID=Gvermi7027.t1|Name=Gvermi7027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_24229:988431..989281- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACTTATACCCTTGATCAGACATTGGTCTGATCACATTGCCACTTC
TCTCACACAGACAGAGTTACCTTATCTAGAGCGCGAGAAAGTCACACCGT
CCAATATGTTTTATCATCCAGCATCCCTACCAGAGGGGAGAGAAAACGGC
ACATCTTTACGCCGTGCAGATCGCGAGCGATTGGTCTTCGCCTATATACC
GGCCCAAGCACCTGCCATTGTTCGTATGCAGCGTCTAGCAAAAAAGTCTG
GCATTTCCACCCAAGAGTTGGACTCTGTGGCACCCGTTTCGGGGTATACT
TGCGAAGCCACGGGAACTTCCGATCCTCAGGCGAACATGAGTGGTGATCA
TGTTTGCGCTGTTTGCCTAGAAGATATGGTACCTGGGAGCAAGACAAGAC
GTCTTCCTTGTGGTCATTGGTTCGATGCAGATTGCATCGACGTGTGGGCG
ACCAAAGCAAACCGTTGTCCGGTTTGCAATACGAAAATCATCGACGAAGG
AGAGCTGGAGAGACGTCGTCTAAGAACGTTCGAAGCAGCAGACCACAGCA
TTCGACAACGCCAAAGACGCACTCGCGGTGAGAGCGGTGCTTTCGAGCTA
GCAATAGTGGATGAGCACAATATCCTGGCGTCTGTGAGCAATGTGCCCCC
TAACAGGACATCCAGTACCGTGGTCGATGAGAGCGCGTAA
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protein sequence of Gvermi7027.t1

>Gvermi7027.t1 ID=Gvermi7027.t1|Name=Gvermi7027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MPLIPLIRHWSDHIATSLTQTELPYLEREKVTPSNMFYHPASLPEGRENG
TSLRRADRERLVFAYIPAQAPAIVRMQRLAKKSGISTQELDSVAPVSGYT
CEATGTSDPQANMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWA
TKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQRRTRGESGAFEL
AIVDEHNILASVSNVPPNRTSSTVVDESA*
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mRNA from alignment at ScGOVlb_24229:988431..989281-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7027.t1 ID=Gvermi7027.t1|Name=Gvermi7027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=851bp|location=Sequence derived from alignment at ScGOVlb_24229:988431..989281- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACTTATACCCTTGATCAGACATTGGTCTGATCACATTGCCACTTC
TCTCACACAGACAGAGTTACCTTATCTAGAGCGCGAGAAAGTCACACCGT
CCAATATGTTTGTATGGATAATCTTAGGCGTTTTGTTGGGTGTTGTATTA
TGCATTCTGATCAGTTTGGTTGTGCTTCGTCTACGCATGCGCGCTCAGTA
TCATCCAGCATCCCTACCAGAGGGGAGAGAAAACGGCACATCTTTACGCC
GTGCAGATCGCGAGCGATTGGTCTTCGCCTATATACCGGCCCAAGCACCT
GCCATTGTTCGTATGCAGCGTCTAGCAAAAAAGTCTGGCATTTCCACCCA
AGAGTTGGACTCTGTGGCACCCGTTTCGGGGTATACTTGCGAAGCCACGG
GAACTTCCGATCCTCAGGCGAACATGAGTGGTGATCATGTTTGCGCTGTT
TGCCTAGAAGATATGGTACCTGGGAGCAAGACAAGACGTCTTCCTTGTGG
TCATTGGTTCGATGCAGAGTACGTTGCGCTTTGCTTGACTATCGTTTGGG
AGCTGGAGCGCCCTATTATTCTAACCTTGTTTCCCTACGTAGTTGCATCG
ACGTGTGGGCGACCAAAGCAAACCGTTGTCCGGTTTGCAATACGAAAATC
ATCGACGAAGGAGAGCTGGAGAGACGTCGTCTAAGAACGTTCGAAGCAGC
AGACCACAGCATTCGACAACGCCAAAGACGCACTCGCGGTGAGAGCGGTG
CTTTCGAGCTAGCAATAGTGGATGAGCACAATATCCTGGCGTCTGTGAGC
AATGTGCCCCCTAACAGGACATCCAGTACCGTGGTCGATGAGAGCGCGTA
A
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Coding sequence (CDS) from alignment at ScGOVlb_24229:988431..989281-

>Gvermi7027.t1 ID=Gvermi7027.t1|Name=Gvermi7027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=690bp|location=Sequence derived from alignment at ScGOVlb_24229:988431..989281- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCACTTATACCCTTGATCAGACATTGGTCTGATCACATTGCCACTTC
TCTCACACAGACAGAGTTACCTTATCTAGAGCGCGAGAAAGTCACACCGT
CCAATATGTTTTATCATCCAGCATCCCTACCAGAGGGGAGAGAAAACGGC
ACATCTTTACGCCGTGCAGATCGCGAGCGATTGGTCTTCGCCTATATACC
GGCCCAAGCACCTGCCATTGTTCGTATGCAGCGTCTAGCAAAAAAGTCTG
GCATTTCCACCCAAGAGTTGGACTCTGTGGCACCCGTTTCGGGGTATACT
TGCGAAGCCACGGGAACTTCCGATCCTCAGGCGAACATGAGTGGTGATCA
TGTTTGCGCTGTTTGCCTAGAAGATATGGTACCTGGGAGCAAGACAAGAC
GTCTTCCTTGTGGTCATTGGTTCGATGCAGATTGCATCGACGTGTGGGCG
ACCAAAGCAAACCGTTGTCCGGTTTGCAATACGAAAATCATCGACGAAGG
AGAGCTGGAGAGACGTCGTCTAAGAACGTTCGAAGCAGCAGACCACAGCA
TTCGACAACGCCAAAGACGCACTCGCGGTGAGAGCGGTGCTTTCGAGCTA
GCAATAGTGGATGAGCACAATATCCTGGCGTCTGTGAGCAATGTGCCCCC
TAACAGGACATCCAGTACCGTGGTCGATGAGAGCGCGTAA
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