Gvermi7024.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7024.t1
Unique NameGvermi7024.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:976792..977721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009042643.1
Preferred namePDXK
PFAMsPhos_pyr_kin
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00868,ko:K02145
KEGG TC3.A.2.2
KEGG ReactionR00174,R01909,R02493
KEGG Pathwayko00190,ko00750,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map00750,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000003,GO:0000166,GO:0000278,GO:0000281,GO:0000282,GO:0000287,GO:0000910,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006972,GO:0007049,GO:0007154,GO:0007163,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008283,GO:0008478,GO:0008614,GO:0008615,GO:0009058,GO:0009108,GO:0009110,GO:0009267,GO:0009314,GO:0009443,GO:0009605,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009888,GO:0009987,GO:0009991,GO:0010015,GO:0010033,GO:0010053,GO:0010054,GO:0010165,GO:0010212,GO:0010243,GO:0010941,GO:0012505,GO:0014070,GO:0014075,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017085,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019842,GO:0019954,GO:0022402,GO:0022622,GO:0030010,GO:0030141,GO:0030154,GO:0030170,GO:0030554,GO:0030587,GO:0030955,GO:0031152,GO:0031402,GO:0031403,GO:0031410,GO:0031420,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032094,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032570,GO:0032940,GO:0033554,GO:0033993,GO:0034284,GO:0034641,GO:0034774,GO:0035580,GO:0035639,GO:0036094,GO:0036230,GO:0042119,GO:0042221,GO:0042364,GO:0042493,GO:0042538,GO:0042581,GO:0042594,GO:0042802,GO:0042803,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0045055,GO:0045321,GO:0046184,GO:0046483,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0048037,GO:0048364,GO:0048519,GO:0048523,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0060205,GO:0060548,GO:0061640,GO:0065007,GO:0070013,GO:0070279,GO:0070280,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071496,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0090558,GO:0090627,GO:0090702,GO:0097159,GO:0097367,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099402,GO:0099503,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1903047,GO:1905392
Evalue2.42e-65
EggNOG OGsCOG2240@1|root,KOG2599@2759|Eukaryota
EC2.7.1.35,3.6.3.14
Descriptionpyridoxal 5'-phosphate salvage
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7024Gvermi7024Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 976792..977721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7024.t1.stop1Gvermi7024.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 976792..976794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7024.t1.CDS1Gvermi7024.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 976792..977721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7024.t1.exon1Gvermi7024.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 976792..977721 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7024.t1.start1Gvermi7024.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 977719..977721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7024.t1Gvermi7024.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 976792..977721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7024.t1 ID=Gvermi7024.t1|Name=Gvermi7024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
MTAAAAAAVARRVLSVQSHVTSGYVGNRAAAFPLQLLGYDVDILNSCQLS
NHTGYQHGAAGIRLDADDLRTVLRAMRANGLLSSTSHLLTGFMATPGCLL
AVVDAVALLRSECARPLMYVCDPVLGDNGKLYVPDQLVDIYKRSVLPLAT
VLTPNAFELSLLTNTTITNERDSFAACSFLHHRYHIPTVIVTGTTFAPQS
DTISVLVSHHTPQRHLRFAVDTKHIDAKFTGTGDLMAALLLVWLDRFPED
PVRACSTATASVSAVLQNTAKLPKSEGHCPHPELRLIQSQNHILHPPLGL
VSVRHICMP*
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spliced messenger RNA

>Gvermi7024.t1 ID=Gvermi7024.t1|Name=Gvermi7024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_24229:976792..977721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCGCCGCCGCCGCCGCCGTCGCGCGCCGCGTGCTGTCCGTGCA
GAGCCATGTCACCTCCGGCTACGTCGGCAACAGGGCCGCCGCCTTCCCGC
TGCAGCTGCTCGGCTACGACGTCGACATCCTCAACTCTTGCCAGTTGTCC
AACCACACCGGCTACCAGCACGGCGCCGCCGGCATCCGCCTCGACGCCGA
CGACCTACGCACCGTGCTGCGCGCCATGCGCGCCAACGGCCTGCTGTCCT
CCACCTCGCACCTGCTCACCGGCTTCATGGCCACCCCCGGCTGCCTGCTC
GCCGTCGTCGACGCCGTCGCCCTGCTGCGCTCCGAGTGCGCGCGCCCCCT
GATGTACGTGTGCGACCCCGTGCTGGGCGACAACGGCAAGCTCTACGTCC
CCGACCAGCTCGTCGACATTTACAAGCGCTCCGTCCTGCCGCTGGCCACC
GTCCTCACCCCCAACGCCTTCGAGCTCTCGCTGCTCACAAACACCACCAT
CACCAACGAGCGCGACTCCTTCGCCGCCTGCAGCTTCCTGCACCACCGCT
ACCACATCCCCACCGTCATCGTCACCGGCACCACGTTTGCGCCCCAGTCC
GACACCATCTCTGTTCTGGTGTCGCACCACACGCCGCAACGCCACCTGCG
CTTTGCTGTCGACACCAAGCACATTGACGCCAAATTCACCGGCACGGGCG
ACTTGATGGCTGCCCTGTTGTTGGTCTGGTTGGACAGGTTTCCAGAAGAC
CCCGTGCGCGCCTGCTCCACCGCCACCGCCTCCGTCTCGGCCGTCTTGCA
AAACACCGCAAAGCTGCCCAAAAGCGAGGGCCACTGCCCGCACCCAGAGC
TGCGTCTCATCCAGAGCCAAAACCACATTCTCCACCCGCCTCTCGGTTTG
GTTTCAGTGCGCCACATATGTATGCCGTAG
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protein sequence of Gvermi7024.t1

>Gvermi7024.t1 ID=Gvermi7024.t1|Name=Gvermi7024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MTAAAAAAVARRVLSVQSHVTSGYVGNRAAAFPLQLLGYDVDILNSCQLS
NHTGYQHGAAGIRLDADDLRTVLRAMRANGLLSSTSHLLTGFMATPGCLL
AVVDAVALLRSECARPLMYVCDPVLGDNGKLYVPDQLVDIYKRSVLPLAT
VLTPNAFELSLLTNTTITNERDSFAACSFLHHRYHIPTVIVTGTTFAPQS
DTISVLVSHHTPQRHLRFAVDTKHIDAKFTGTGDLMAALLLVWLDRFPED
PVRACSTATASVSAVLQNTAKLPKSEGHCPHPELRLIQSQNHILHPPLGL
VSVRHICMP*
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mRNA from alignment at ScGOVlb_24229:976792..977721-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7024.t1 ID=Gvermi7024.t1|Name=Gvermi7024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_24229:976792..977721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCGCCGCCGCCGCCGCCGTCGCGCGCCGCGTGCTGTCCGTGCA
GAGCCATGTCACCTCCGGCTACGTCGGCAACAGGGCCGCCGCCTTCCCGC
TGCAGCTGCTCGGCTACGACGTCGACATCCTCAACTCTTGCCAGTTGTCC
AACCACACCGGCTACCAGCACGGCGCCGCCGGCATCCGCCTCGACGCCGA
CGACCTACGCACCGTGCTGCGCGCCATGCGCGCCAACGGCCTGCTGTCCT
CCACCTCGCACCTGCTCACCGGCTTCATGGCCACCCCCGGCTGCCTGCTC
GCCGTCGTCGACGCCGTCGCCCTGCTGCGCTCCGAGTGCGCGCGCCCCCT
GATGTACGTGTGCGACCCCGTGCTGGGCGACAACGGCAAGCTCTACGTCC
CCGACCAGCTCGTCGACATTTACAAGCGCTCCGTCCTGCCGCTGGCCACC
GTCCTCACCCCCAACGCCTTCGAGCTCTCGCTGCTCACAAACACCACCAT
CACCAACGAGCGCGACTCCTTCGCCGCCTGCAGCTTCCTGCACCACCGCT
ACCACATCCCCACCGTCATCGTCACCGGCACCACGTTTGCGCCCCAGTCC
GACACCATCTCTGTTCTGGTGTCGCACCACACGCCGCAACGCCACCTGCG
CTTTGCTGTCGACACCAAGCACATTGACGCCAAATTCACCGGCACGGGCG
ACTTGATGGCTGCCCTGTTGTTGGTCTGGTTGGACAGGTTTCCAGAAGAC
CCCGTGCGCGCCTGCTCCACCGCCACCGCCTCCGTCTCGGCCGTCTTGCA
AAACACCGCAAAGCTGCCCAAAAGCGAGGGCCACTGCCCGCACCCAGAGC
TGCGTCTCATCCAGAGCCAAAACCACATTCTCCACCCGCCTCTCGGTTTG
GTTTCAGTGCGCCACATATGTATGCCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:976792..977721-

>Gvermi7024.t1 ID=Gvermi7024.t1|Name=Gvermi7024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_24229:976792..977721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCGCCGCCGCCGCCGCCGTCGCGCGCCGCGTGCTGTCCGTGCA
GAGCCATGTCACCTCCGGCTACGTCGGCAACAGGGCCGCCGCCTTCCCGC
TGCAGCTGCTCGGCTACGACGTCGACATCCTCAACTCTTGCCAGTTGTCC
AACCACACCGGCTACCAGCACGGCGCCGCCGGCATCCGCCTCGACGCCGA
CGACCTACGCACCGTGCTGCGCGCCATGCGCGCCAACGGCCTGCTGTCCT
CCACCTCGCACCTGCTCACCGGCTTCATGGCCACCCCCGGCTGCCTGCTC
GCCGTCGTCGACGCCGTCGCCCTGCTGCGCTCCGAGTGCGCGCGCCCCCT
GATGTACGTGTGCGACCCCGTGCTGGGCGACAACGGCAAGCTCTACGTCC
CCGACCAGCTCGTCGACATTTACAAGCGCTCCGTCCTGCCGCTGGCCACC
GTCCTCACCCCCAACGCCTTCGAGCTCTCGCTGCTCACAAACACCACCAT
CACCAACGAGCGCGACTCCTTCGCCGCCTGCAGCTTCCTGCACCACCGCT
ACCACATCCCCACCGTCATCGTCACCGGCACCACGTTTGCGCCCCAGTCC
GACACCATCTCTGTTCTGGTGTCGCACCACACGCCGCAACGCCACCTGCG
CTTTGCTGTCGACACCAAGCACATTGACGCCAAATTCACCGGCACGGGCG
ACTTGATGGCTGCCCTGTTGTTGGTCTGGTTGGACAGGTTTCCAGAAGAC
CCCGTGCGCGCCTGCTCCACCGCCACCGCCTCCGTCTCGGCCGTCTTGCA
AAACACCGCAAAGCTGCCCAAAAGCGAGGGCCACTGCCCGCACCCAGAGC
TGCGTCTCATCCAGAGCCAAAACCACATTCTCCACCCGCCTCTCGGTTTG
GTTTCAGTGCGCCACATATGTATGCCGTAG
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