Gvermi7020.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7020.t1
Unique NameGvermi7020.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:965188..966627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7020Gvermi7020Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 965188..966627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7020.t1.stop1Gvermi7020.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 965188..965190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7020.t1.CDS1Gvermi7020.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 965188..966627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7020.t1.exon1Gvermi7020.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 965188..966627 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7020.t1.start1Gvermi7020.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 966625..966627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7020.t1Gvermi7020.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 965188..966627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7020.t1 ID=Gvermi7020.t1|Name=Gvermi7020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp
MGRTSYRWSNFDHKPPGSNVSITDINGSRSTIASFRPDTPGYYSLSLAVK
GHGVTYSQPINVFVFDEDDAAQRSEAQTIAAAPDQSCYVIGCRFAKPAPH
ANRAPPSPPNNNNNAHTAALSAPATATRGEPAHPASPSRPSAAALSTHRP
ANNRSKSDPQPASQPPDSRRPPPHPNSLPMPPGSPKPTTAPGGYDDDDDD
NVHDDDDDDDDDAVIGGGGGYEDDDDEDLDALDSADDDEDEHLGDPGGDD
DDAPNDDQGADDDDDGADDGDGADDDPNQGDDQDDDDPSDDDDNQEEIEI
DEEEEIASDVDFDTVQPHDPAHLPQQPHDPEEDDTDAKKSAQHDDDDDDD
DDDNGMYDEPQDPQHEGDDDDAEDDDDGAQDEEDADEELDRDDDQAEPKN
ATQEDDDGADDDDDDDDDDDDDDDDEDDEMMDDPDAQDIYPSGATPQEQG
LGNQDDDDNVGDNEGYEDLEIENDDDGDE*
back to top

spliced messenger RNA

>Gvermi7020.t1 ID=Gvermi7020.t1|Name=Gvermi7020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_24229:965188..966627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCACGTCGTACCGCTGGTCCAACTTTGACCACAAGCCGCCGGG
ATCAAATGTGTCCATCACCGACATCAACGGCAGCCGCTCCACCATAGCGT
CGTTCCGCCCGGACACGCCGGGCTACTACTCACTCAGCCTGGCCGTCAAG
GGCCACGGTGTTACTTACTCGCAACCCATCAACGTCTTTGTGTTTGACGA
GGACGATGCGGCTCAGCGCAGCGAGGCGCAAACGATAGCCGCCGCCCCGG
ACCAGTCCTGTTACGTCATTGGCTGCCGCTTCGCAAAACCCGCGCCGCAT
GCCAATCGCGCCCCGCCGTCGCCGCCCAACAACAACAACAACGCGCACAC
CGCCGCCTTGTCAGCGCCTGCAACCGCGACACGTGGCGAGCCCGCTCACC
CCGCCTCTCCTTCGCGCCCCTCCGCTGCCGCCCTCTCGACGCACCGCCCG
GCGAACAACCGCTCCAAGAGCGATCCGCAACCCGCTTCACAGCCCCCCGA
CAGCCGCCGTCCCCCGCCGCACCCCAATTCACTTCCGATGCCGCCTGGCT
CCCCCAAGCCTACCACCGCCCCCGGTGGCTACGACGACGACGACGACGAC
AATGTGCACGATGACGACGACGACGACGACGACGATGCGGTCATTGGTGG
CGGTGGCGGCTACGAGGACGACGACGACGAAGATTTAGATGCCTTGGACA
GTGCTGATGACGACGAAGACGAACATCTGGGCGATCCTGGCGGTGACGAT
GATGATGCCCCCAATGACGACCAGGGCGCCGATGACGACGACGACGGTGC
CGATGACGGAGACGGAGCCGATGATGACCCCAACCAGGGTGATGACCAAG
ACGACGACGATCCCAGCGATGACGACGATAACCAGGAAGAAATCGAAATC
GACGAGGAAGAAGAAATCGCCTCGGACGTCGATTTTGATACTGTACAGCC
CCACGATCCTGCCCATTTACCGCAGCAACCACACGATCCCGAGGAAGATG
ATACTGATGCGAAGAAATCTGCACAACATGATGATGACGACGACGATGAT
GATGATGACAACGGCATGTATGACGAACCTCAAGATCCCCAGCACGAAGG
CGATGATGATGATGCCGAAGATGACGATGATGGCGCGCAAGATGAAGAAG
ACGCCGATGAAGAACTGGACCGTGATGATGACCAAGCCGAACCGAAAAAT
GCAACACAAGAAGACGACGACGGCGCTGATGACGATGACGACGACGATGA
TGATGATGACGACGACGACGATGACGAGGATGACGAAATGATGGACGACC
CTGACGCCCAAGATATTTATCCATCTGGCGCCACACCTCAAGAACAAGGC
CTCGGTAACCAGGATGATGACGACAATGTCGGTGATAATGAAGGCTACGA
GGACTTAGAGATAGAGAATGATGACGACGGAGACGAATAA
back to top

protein sequence of Gvermi7020.t1

>Gvermi7020.t1 ID=Gvermi7020.t1|Name=Gvermi7020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=480bp
MGRTSYRWSNFDHKPPGSNVSITDINGSRSTIASFRPDTPGYYSLSLAVK
GHGVTYSQPINVFVFDEDDAAQRSEAQTIAAAPDQSCYVIGCRFAKPAPH
ANRAPPSPPNNNNNAHTAALSAPATATRGEPAHPASPSRPSAAALSTHRP
ANNRSKSDPQPASQPPDSRRPPPHPNSLPMPPGSPKPTTAPGGYDDDDDD
NVHDDDDDDDDDAVIGGGGGYEDDDDEDLDALDSADDDEDEHLGDPGGDD
DDAPNDDQGADDDDDGADDGDGADDDPNQGDDQDDDDPSDDDDNQEEIEI
DEEEEIASDVDFDTVQPHDPAHLPQQPHDPEEDDTDAKKSAQHDDDDDDD
DDDNGMYDEPQDPQHEGDDDDAEDDDDGAQDEEDADEELDRDDDQAEPKN
ATQEDDDGADDDDDDDDDDDDDDDDEDDEMMDDPDAQDIYPSGATPQEQG
LGNQDDDDNVGDNEGYEDLEIENDDDGDE*
back to top

mRNA from alignment at ScGOVlb_24229:965188..966627-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7020.t1 ID=Gvermi7020.t1|Name=Gvermi7020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_24229:965188..966627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCGCACGTCGTACCGCTGGTCCAACTTTGACCACAAGCCGCCGGG
ATCAAATGTGTCCATCACCGACATCAACGGCAGCCGCTCCACCATAGCGT
CGTTCCGCCCGGACACGCCGGGCTACTACTCACTCAGCCTGGCCGTCAAG
GGCCACGGTGTTACTTACTCGCAACCCATCAACGTCTTTGTGTTTGACGA
GGACGATGCGGCTCAGCGCAGCGAGGCGCAAACGATAGCCGCCGCCCCGG
ACCAGTCCTGTTACGTCATTGGCTGCCGCTTCGCAAAACCCGCGCCGCAT
GCCAATCGCGCCCCGCCGTCGCCGCCCAACAACAACAACAACGCGCACAC
CGCCGCCTTGTCAGCGCCTGCAACCGCGACACGTGGCGAGCCCGCTCACC
CCGCCTCTCCTTCGCGCCCCTCCGCTGCCGCCCTCTCGACGCACCGCCCG
GCGAACAACCGCTCCAAGAGCGATCCGCAACCCGCTTCACAGCCCCCCGA
CAGCCGCCGTCCCCCGCCGCACCCCAATTCACTTCCGATGCCGCCTGGCT
CCCCCAAGCCTACCACCGCCCCCGGTGGCTACGACGACGACGACGACGAC
AATGTGCACGATGACGACGACGACGACGACGACGATGCGGTCATTGGTGG
CGGTGGCGGCTACGAGGACGACGACGACGAAGATTTAGATGCCTTGGACA
GTGCTGATGACGACGAAGACGAACATCTGGGCGATCCTGGCGGTGACGAT
GATGATGCCCCCAATGACGACCAGGGCGCCGATGACGACGACGACGGTGC
CGATGACGGAGACGGAGCCGATGATGACCCCAACCAGGGTGATGACCAAG
ACGACGACGATCCCAGCGATGACGACGATAACCAGGAAGAAATCGAAATC
GACGAGGAAGAAGAAATCGCCTCGGACGTCGATTTTGATACTGTACAGCC
CCACGATCCTGCCCATTTACCGCAGCAACCACACGATCCCGAGGAAGATG
ATACTGATGCGAAGAAATCTGCACAACATGATGATGACGACGACGATGAT
GATGATGACAACGGCATGTATGACGAACCTCAAGATCCCCAGCACGAAGG
CGATGATGATGATGCCGAAGATGACGATGATGGCGCGCAAGATGAAGAAG
ACGCCGATGAAGAACTGGACCGTGATGATGACCAAGCCGAACCGAAAAAT
GCAACACAAGAAGACGACGACGGCGCTGATGACGATGACGACGACGATGA
TGATGATGACGACGACGACGATGACGAGGATGACGAAATGATGGACGACC
CTGACGCCCAAGATATTTATCCATCTGGCGCCACACCTCAAGAACAAGGC
CTCGGTAACCAGGATGATGACGACAATGTCGGTGATAATGAAGGCTACGA
GGACTTAGAGATAGAGAATGATGACGACGGAGACGAATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:965188..966627-

>Gvermi7020.t1 ID=Gvermi7020.t1|Name=Gvermi7020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1440bp|location=Sequence derived from alignment at ScGOVlb_24229:965188..966627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCCGCACGTCGTACCGCTGGTCCAACTTTGACCACAAGCCGCCGGG
ATCAAATGTGTCCATCACCGACATCAACGGCAGCCGCTCCACCATAGCGT
CGTTCCGCCCGGACACGCCGGGCTACTACTCACTCAGCCTGGCCGTCAAG
GGCCACGGTGTTACTTACTCGCAACCCATCAACGTCTTTGTGTTTGACGA
GGACGATGCGGCTCAGCGCAGCGAGGCGCAAACGATAGCCGCCGCCCCGG
ACCAGTCCTGTTACGTCATTGGCTGCCGCTTCGCAAAACCCGCGCCGCAT
GCCAATCGCGCCCCGCCGTCGCCGCCCAACAACAACAACAACGCGCACAC
CGCCGCCTTGTCAGCGCCTGCAACCGCGACACGTGGCGAGCCCGCTCACC
CCGCCTCTCCTTCGCGCCCCTCCGCTGCCGCCCTCTCGACGCACCGCCCG
GCGAACAACCGCTCCAAGAGCGATCCGCAACCCGCTTCACAGCCCCCCGA
CAGCCGCCGTCCCCCGCCGCACCCCAATTCACTTCCGATGCCGCCTGGCT
CCCCCAAGCCTACCACCGCCCCCGGTGGCTACGACGACGACGACGACGAC
AATGTGCACGATGACGACGACGACGACGACGACGATGCGGTCATTGGTGG
CGGTGGCGGCTACGAGGACGACGACGACGAAGATTTAGATGCCTTGGACA
GTGCTGATGACGACGAAGACGAACATCTGGGCGATCCTGGCGGTGACGAT
GATGATGCCCCCAATGACGACCAGGGCGCCGATGACGACGACGACGGTGC
CGATGACGGAGACGGAGCCGATGATGACCCCAACCAGGGTGATGACCAAG
ACGACGACGATCCCAGCGATGACGACGATAACCAGGAAGAAATCGAAATC
GACGAGGAAGAAGAAATCGCCTCGGACGTCGATTTTGATACTGTACAGCC
CCACGATCCTGCCCATTTACCGCAGCAACCACACGATCCCGAGGAAGATG
ATACTGATGCGAAGAAATCTGCACAACATGATGATGACGACGACGATGAT
GATGATGACAACGGCATGTATGACGAACCTCAAGATCCCCAGCACGAAGG
CGATGATGATGATGCCGAAGATGACGATGATGGCGCGCAAGATGAAGAAG
ACGCCGATGAAGAACTGGACCGTGATGATGACCAAGCCGAACCGAAAAAT
GCAACACAAGAAGACGACGACGGCGCTGATGACGATGACGACGACGATGA
TGATGATGACGACGACGACGATGACGAGGATGACGAAATGATGGACGACC
CTGACGCCCAAGATATTTATCCATCTGGCGCCACACCTCAAGAACAAGGC
CTCGGTAACCAGGATGATGACGACAATGTCGGTGATAATGAAGGCTACGA
GGACTTAGAGATAGAGAATGATGACGACGGAGACGAATAA
back to top