Gvermi7019.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7019.t1
Unique NameGvermi7019.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length555
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:962522..964323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S123_155V6.1
PFAMsWD40
Max annot lvl35493|Streptophyta
KEGG koko:K22382
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009737,GO:0010033,GO:0033993,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0097305,GO:1901700
Evalue2.77e-108
EggNOG OGsKOG0293@1|root,KOG0293@2759|Eukaryota,37KWQ@33090|Viridiplantae,3GADX@35493|Streptophyta
DescriptionWD repeat-containing protein
COG categoryCE
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7019Gvermi7019Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 962522..964323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7019.t1Gvermi7019.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 962522..964323 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7019.t1.stop1Gvermi7019.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 962522..962524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7019.t1.CDS1Gvermi7019.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 962522..962551 -
Gvermi7019.t1.CDS2Gvermi7019.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 962689..964323 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7019.t1.exon1Gvermi7019.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 962522..962551 -
Gvermi7019.t1.exon2Gvermi7019.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 962689..964323 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7019.t1.intron1Gvermi7019.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 962552..962688 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7019.t1.start1Gvermi7019.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 964321..964323 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7019.t1 ID=Gvermi7019.t1|Name=Gvermi7019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=555bp
MNGVGATANGVHSDADPLDGANSSDTRMESNLTERGLDRHELVRIIVQAI
DALGYSSSARTLEKEAGVEAMSQQMRTLRDCVLQGKWDRLEQVLSQVTVF
KSDDDARAARFVLYEQKFLELLEAGYTADALECLRNDLTRLSPDPKLLHK
LPLLCMCTTADEVRDRAEWPGAGSESRTAVLEKLQRYIPASELLQENRLE
NLLWQAIEQQKRDTMFPYTRQSRVSLLEDMVHCEDRVPRRVLHRLEGHTD
EVWFVQFSHRGEYLASSSKDAVVIVWKTGALLDGKCNKSNAILYKLRGHS
QMVCFLSWSPDDQYLLSTGEDQTIRMWDVNNGECCRVFEKHNDSITSCAW
MPNGKTFVSGSHDQRLLEWNAENGEVVASYNVPNRVNDLTISTDGKLLVA
TCSDNTILVFDTEKKQQLSVMKELYSITSLFLSADSQFLLVNINSHEDPE
AIDPEIHVWSIPKQRIVQKLHGYKQTRYVIRACFGGHNQMLVLCGSEDEL
VYIWERRSGKLIAKLKGHEGTVNTISCQENNQNVFASGSDDKTIIIWGPG
NGSK*
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spliced messenger RNA

>Gvermi7019.t1 ID=Gvermi7019.t1|Name=Gvermi7019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at ScGOVlb_24229:962522..964323- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGGGTTGGTGCCACTGCAAATGGCGTTCATTCCGACGCCGACCC
CCTGGATGGCGCGAACTCTTCCGATACGCGAATGGAATCCAACCTCACAG
AACGGGGGCTAGACCGCCATGAGCTTGTTCGAATAATTGTTCAAGCGATC
GATGCCCTGGGATACAGTTCGTCGGCTCGCACGCTAGAAAAGGAGGCTGG
AGTCGAGGCCATGAGTCAACAGATGCGCACGTTGCGTGATTGCGTTCTTC
AGGGAAAATGGGACCGTCTAGAACAAGTTCTGTCGCAAGTAACTGTGTTC
AAGTCTGACGATGACGCTCGGGCAGCCCGTTTTGTTCTTTATGAACAAAA
ATTTCTCGAGCTTCTGGAGGCTGGTTATACAGCAGATGCGTTGGAGTGTC
TACGAAACGATTTGACTCGCTTGAGTCCGGACCCGAAGCTACTTCACAAA
CTTCCCCTACTCTGCATGTGCACAACAGCCGATGAAGTGCGTGATCGCGC
CGAATGGCCGGGTGCGGGCTCGGAGTCGCGAACCGCCGTCTTGGAGAAAC
TTCAGCGCTATATCCCTGCTAGCGAGCTTTTGCAAGAGAACCGATTAGAG
AATTTGTTATGGCAAGCTATTGAACAGCAAAAGCGCGACACGATGTTTCC
GTACACGCGACAGAGTCGCGTCAGTTTACTGGAGGACATGGTTCACTGTG
AGGATCGTGTTCCAAGAAGGGTACTACACCGTCTAGAGGGTCATACAGAT
GAGGTATGGTTTGTCCAATTTTCACACCGCGGCGAGTATCTCGCATCCTC
TTCAAAGGATGCCGTTGTCATTGTGTGGAAAACTGGGGCGCTTTTAGACG
GCAAATGCAATAAGAGCAATGCAATATTGTACAAGCTAAGAGGCCATTCG
CAAATGGTCTGTTTTTTGAGTTGGTCTCCAGATGATCAGTATCTTCTCAG
CACTGGCGAAGACCAGACGATTCGCATGTGGGACGTAAACAACGGCGAGT
GCTGTCGTGTCTTTGAGAAGCATAATGACTCCATCACCTCCTGTGCGTGG
ATGCCAAACGGAAAGACTTTTGTTTCAGGTTCACATGACCAAAGATTATT
GGAGTGGAATGCTGAAAACGGAGAAGTAGTCGCATCCTACAATGTTCCGA
ATCGCGTGAACGATCTTACCATATCAACTGATGGCAAGCTGCTTGTCGCA
ACGTGCTCGGACAACACAATCCTTGTTTTCGACACCGAAAAGAAACAGCA
GTTGTCTGTGATGAAAGAGCTCTACAGCATTACCTCTCTTTTCTTATCTG
CAGATAGCCAGTTCCTTCTCGTGAATATCAATTCCCACGAAGACCCCGAG
GCCATTGACCCAGAAATTCACGTTTGGAGTATTCCAAAGCAACGAATTGT
ACAGAAGTTGCACGGATACAAACAAACAAGATATGTGATCCGCGCATGCT
TTGGAGGACATAACCAGATGCTTGTTCTCTGTGGATCAGAAGATGAACTC
GTCTACATCTGGGAGCGACGAAGTGGTAAGCTTATTGCAAAACTCAAGGG
ACATGAAGGAACTGTGAATACCATTTCTTGTCAAGAGAACAATCAGAATG
TGTTTGCATCTGGTTCTGATGACAAGACCATCATAATATGGGGGCCTGGT
AACGGATCAAAGTAA
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protein sequence of Gvermi7019.t1

>Gvermi7019.t1 ID=Gvermi7019.t1|Name=Gvermi7019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=555bp
MNGVGATANGVHSDADPLDGANSSDTRMESNLTERGLDRHELVRIIVQAI
DALGYSSSARTLEKEAGVEAMSQQMRTLRDCVLQGKWDRLEQVLSQVTVF
KSDDDARAARFVLYEQKFLELLEAGYTADALECLRNDLTRLSPDPKLLHK
LPLLCMCTTADEVRDRAEWPGAGSESRTAVLEKLQRYIPASELLQENRLE
NLLWQAIEQQKRDTMFPYTRQSRVSLLEDMVHCEDRVPRRVLHRLEGHTD
EVWFVQFSHRGEYLASSSKDAVVIVWKTGALLDGKCNKSNAILYKLRGHS
QMVCFLSWSPDDQYLLSTGEDQTIRMWDVNNGECCRVFEKHNDSITSCAW
MPNGKTFVSGSHDQRLLEWNAENGEVVASYNVPNRVNDLTISTDGKLLVA
TCSDNTILVFDTEKKQQLSVMKELYSITSLFLSADSQFLLVNINSHEDPE
AIDPEIHVWSIPKQRIVQKLHGYKQTRYVIRACFGGHNQMLVLCGSEDEL
VYIWERRSGKLIAKLKGHEGTVNTISCQENNQNVFASGSDDKTIIIWGPG
NGSK*
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mRNA from alignment at ScGOVlb_24229:962522..964323-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7019.t1 ID=Gvermi7019.t1|Name=Gvermi7019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1802bp|location=Sequence derived from alignment at ScGOVlb_24229:962522..964323- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGGGGTTGGTGCCACTGCAAATGGCGTTCATTCCGACGCCGACCC
CCTGGATGGCGCGAACTCTTCCGATACGCGAATGGAATCCAACCTCACAG
AACGGGGGCTAGACCGCCATGAGCTTGTTCGAATAATTGTTCAAGCGATC
GATGCCCTGGGATACAGTTCGTCGGCTCGCACGCTAGAAAAGGAGGCTGG
AGTCGAGGCCATGAGTCAACAGATGCGCACGTTGCGTGATTGCGTTCTTC
AGGGAAAATGGGACCGTCTAGAACAAGTTCTGTCGCAAGTAACTGTGTTC
AAGTCTGACGATGACGCTCGGGCAGCCCGTTTTGTTCTTTATGAACAAAA
ATTTCTCGAGCTTCTGGAGGCTGGTTATACAGCAGATGCGTTGGAGTGTC
TACGAAACGATTTGACTCGCTTGAGTCCGGACCCGAAGCTACTTCACAAA
CTTCCCCTACTCTGCATGTGCACAACAGCCGATGAAGTGCGTGATCGCGC
CGAATGGCCGGGTGCGGGCTCGGAGTCGCGAACCGCCGTCTTGGAGAAAC
TTCAGCGCTATATCCCTGCTAGCGAGCTTTTGCAAGAGAACCGATTAGAG
AATTTGTTATGGCAAGCTATTGAACAGCAAAAGCGCGACACGATGTTTCC
GTACACGCGACAGAGTCGCGTCAGTTTACTGGAGGACATGGTTCACTGTG
AGGATCGTGTTCCAAGAAGGGTACTACACCGTCTAGAGGGTCATACAGAT
GAGGTATGGTTTGTCCAATTTTCACACCGCGGCGAGTATCTCGCATCCTC
TTCAAAGGATGCCGTTGTCATTGTGTGGAAAACTGGGGCGCTTTTAGACG
GCAAATGCAATAAGAGCAATGCAATATTGTACAAGCTAAGAGGCCATTCG
CAAATGGTCTGTTTTTTGAGTTGGTCTCCAGATGATCAGTATCTTCTCAG
CACTGGCGAAGACCAGACGATTCGCATGTGGGACGTAAACAACGGCGAGT
GCTGTCGTGTCTTTGAGAAGCATAATGACTCCATCACCTCCTGTGCGTGG
ATGCCAAACGGAAAGACTTTTGTTTCAGGTTCACATGACCAAAGATTATT
GGAGTGGAATGCTGAAAACGGAGAAGTAGTCGCATCCTACAATGTTCCGA
ATCGCGTGAACGATCTTACCATATCAACTGATGGCAAGCTGCTTGTCGCA
ACGTGCTCGGACAACACAATCCTTGTTTTCGACACCGAAAAGAAACAGCA
GTTGTCTGTGATGAAAGAGCTCTACAGCATTACCTCTCTTTTCTTATCTG
CAGATAGCCAGTTCCTTCTCGTGAATATCAATTCCCACGAAGACCCCGAG
GCCATTGACCCAGAAATTCACGTTTGGAGTATTCCAAAGCAACGAATTGT
ACAGAAGTTGCACGGATACAAACAAACAAGATATGTGATCCGCGCATGCT
TTGGAGGACATAACCAGATGCTTGTTCTCTGTGGATCAGAAGATGAACTC
GTCTACATCTGGGAGCGACGAAGTGGTAAGCTTATTGCAAAACTCAAGGG
ACATGAAGGAACTGTGAATACCATTTCTTGTCAAGAGAACAATCAGAATG
TGTTTGCATCTGGTTCTGATGACAAGACCATCATAGTAAGTTGCCAGCAG
GATTCTACAGCCTTTTTGTTAAGCGAGCACTAGATGTTTAACTCACCGCG
TTTTTCTCGATGTTTTCTGATTTGTCTATCATGCTGTCATTATTCTTTTG
TTTACATGTTCCTTATCATCAGATATGGGGGCCTGGTAACGGATCAAAGT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:962522..964323-

>Gvermi7019.t1 ID=Gvermi7019.t1|Name=Gvermi7019.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1665bp|location=Sequence derived from alignment at ScGOVlb_24229:962522..964323- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGGGGTTGGTGCCACTGCAAATGGCGTTCATTCCGACGCCGACCC
CCTGGATGGCGCGAACTCTTCCGATACGCGAATGGAATCCAACCTCACAG
AACGGGGGCTAGACCGCCATGAGCTTGTTCGAATAATTGTTCAAGCGATC
GATGCCCTGGGATACAGTTCGTCGGCTCGCACGCTAGAAAAGGAGGCTGG
AGTCGAGGCCATGAGTCAACAGATGCGCACGTTGCGTGATTGCGTTCTTC
AGGGAAAATGGGACCGTCTAGAACAAGTTCTGTCGCAAGTAACTGTGTTC
AAGTCTGACGATGACGCTCGGGCAGCCCGTTTTGTTCTTTATGAACAAAA
ATTTCTCGAGCTTCTGGAGGCTGGTTATACAGCAGATGCGTTGGAGTGTC
TACGAAACGATTTGACTCGCTTGAGTCCGGACCCGAAGCTACTTCACAAA
CTTCCCCTACTCTGCATGTGCACAACAGCCGATGAAGTGCGTGATCGCGC
CGAATGGCCGGGTGCGGGCTCGGAGTCGCGAACCGCCGTCTTGGAGAAAC
TTCAGCGCTATATCCCTGCTAGCGAGCTTTTGCAAGAGAACCGATTAGAG
AATTTGTTATGGCAAGCTATTGAACAGCAAAAGCGCGACACGATGTTTCC
GTACACGCGACAGAGTCGCGTCAGTTTACTGGAGGACATGGTTCACTGTG
AGGATCGTGTTCCAAGAAGGGTACTACACCGTCTAGAGGGTCATACAGAT
GAGGTATGGTTTGTCCAATTTTCACACCGCGGCGAGTATCTCGCATCCTC
TTCAAAGGATGCCGTTGTCATTGTGTGGAAAACTGGGGCGCTTTTAGACG
GCAAATGCAATAAGAGCAATGCAATATTGTACAAGCTAAGAGGCCATTCG
CAAATGGTCTGTTTTTTGAGTTGGTCTCCAGATGATCAGTATCTTCTCAG
CACTGGCGAAGACCAGACGATTCGCATGTGGGACGTAAACAACGGCGAGT
GCTGTCGTGTCTTTGAGAAGCATAATGACTCCATCACCTCCTGTGCGTGG
ATGCCAAACGGAAAGACTTTTGTTTCAGGTTCACATGACCAAAGATTATT
GGAGTGGAATGCTGAAAACGGAGAAGTAGTCGCATCCTACAATGTTCCGA
ATCGCGTGAACGATCTTACCATATCAACTGATGGCAAGCTGCTTGTCGCA
ACGTGCTCGGACAACACAATCCTTGTTTTCGACACCGAAAAGAAACAGCA
GTTGTCTGTGATGAAAGAGCTCTACAGCATTACCTCTCTTTTCTTATCTG
CAGATAGCCAGTTCCTTCTCGTGAATATCAATTCCCACGAAGACCCCGAG
GCCATTGACCCAGAAATTCACGTTTGGAGTATTCCAAAGCAACGAATTGT
ACAGAAGTTGCACGGATACAAACAAACAAGATATGTGATCCGCGCATGCT
TTGGAGGACATAACCAGATGCTTGTTCTCTGTGGATCAGAAGATGAACTC
GTCTACATCTGGGAGCGACGAAGTGGTAAGCTTATTGCAAAACTCAAGGG
ACATGAAGGAACTGTGAATACCATTTCTTGTCAAGAGAACAATCAGAATG
TGTTTGCATCTGGTTCTGATGACAAGACCATCATAATATGGGGGCCTGGT
AACGGATCAAAGTAA
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