Gvermi7016.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7016.t1
Unique NameGvermi7016.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:957507..958418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702614.1
Preferred nameCOASY
PFAMsCTP_transf_like,CoaE
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K02201,ko:K02318,ko:K08486,ko:K11374
KEGG ReactionR00130,R03035
KEGG Pathwayko00770,ko01100,ko04130,ko04721,map00770,map01100,map04130,map04721
KEGG ModuleM00120
GOsGO:0000003,GO:0000149,GO:0001667,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004140,GO:0004595,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006140,GO:0006163,GO:0006164,GO:0006629,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006906,GO:0006928,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007300,GO:0007303,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009628,GO:0009651,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009987,GO:0010631,GO:0010876,GO:0012505,GO:0015936,GO:0015937,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016301,GO:0016310,GO:0016477,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019867,GO:0019915,GO:0019953,GO:0022406,GO:0022412,GO:0022414,GO:0030154,GO:0030707,GO:0030808,GO:0030855,GO:0031090,GO:0031201,GO:0031224,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032991,GO:0033036,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040007,GO:0040011,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046390,GO:0046483,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048468,GO:0048477,GO:0048513,GO:0048563,GO:0048569,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051179,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0055086,GO:0055088,GO:0055090,GO:0060429,GO:0060562,GO:0061024,GO:0061025,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070328,GO:0070566,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0080020,GO:0080090,GO:0090130,GO:0090132,GO:0090174,GO:0090407,GO:0098588,GO:0098796,GO:0098805,GO:0140056,GO:1900371,GO:1900542,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1990143
Evalue3.09e-31
EggNOG OGsCOG1019@1|root,KOG3351@2759|Eukaryota
EC2.7.1.24,2.7.7.3
DescriptionCoenzyme A synthase
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7016Gvermi7016Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 957507..958418 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7016.t1.start1Gvermi7016.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 957507..957509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7016.t1.CDS1Gvermi7016.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 957507..958418 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7016.t1.exon1Gvermi7016.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 957507..958418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7016.t1.stop1Gvermi7016.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 958416..958418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7016.t1Gvermi7016.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 957507..958418 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7016.t1 ID=Gvermi7016.t1|Name=Gvermi7016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=304bp
MKCNRDDRPCTMSLEQSNTNSNFDAVLLPVRGGEVNVQVNVGAVRDYLRT
NKPHTFTLYIYPERDNGLSYLRLATCIFSIAVQENRPTADVVLRRRIDGR
KPFLDKVRDTSQNREGSTSSAPPVLNEWLPMDLQDYAYGDLSDDFYNKYE
TVAVGGTFDRLHAGHRLLLTAAVWAAEQTLRIGVTSDTMLQAKEHKDLIQ
SLDTRCESAVAYSKRVKPSVPNVLVTHLTDSSGPTSYEPAINALVVSKET
APGALKINDVRIEAGLNPMTFIIVDVLDTKGVKLSSSALRKAEAGQKLQS
NTI*
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spliced messenger RNA

>Gvermi7016.t1 ID=Gvermi7016.t1|Name=Gvermi7016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_24229:957507..958418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCAACCGTGATGACCGCCCGTGCACCATGAGTCTTGAGCAATC
CAACACCAATTCAAATTTCGACGCTGTTTTGCTTCCAGTTCGTGGTGGAG
AAGTCAACGTACAAGTGAATGTGGGAGCAGTTCGAGACTACCTCAGAACT
AATAAACCTCACACATTTACCTTATATATATACCCGGAGCGTGACAACGG
TTTAAGTTACCTTAGGCTTGCCACATGTATTTTCTCAATTGCTGTCCAGG
AAAACAGACCTACAGCTGATGTGGTACTTCGGAGACGCATAGACGGTCGC
AAACCGTTTCTCGACAAGGTTCGAGATACTTCGCAAAACAGGGAAGGTAG
TACTTCCAGTGCACCTCCAGTACTTAACGAATGGCTCCCAATGGATTTGC
AAGATTATGCATACGGGGATCTCTCAGATGATTTCTATAACAAGTACGAG
ACAGTGGCTGTAGGTGGAACTTTTGACAGATTACATGCGGGCCATCGACT
ACTCTTAACAGCTGCGGTGTGGGCTGCCGAACAAACGCTACGCATTGGCG
TAACGTCTGATACCATGCTCCAAGCGAAGGAGCATAAGGATCTGATACAA
AGCCTTGACACGAGATGTGAAAGCGCCGTGGCCTACTCGAAGCGCGTTAA
ACCGTCTGTTCCAAACGTACTCGTTACACACTTGACGGATTCTTCTGGCC
CAACATCTTATGAGCCAGCCATCAATGCCCTTGTGGTCTCCAAAGAAACG
GCTCCCGGAGCGCTCAAAATCAATGATGTACGCATAGAAGCTGGACTGAA
TCCGATGACTTTCATTATTGTCGACGTACTGGATACGAAGGGTGTGAAGC
TCAGTTCGTCAGCTTTGCGCAAGGCAGAAGCAGGGCAAAAGCTTCAATCA
AACACAATCTAA
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protein sequence of Gvermi7016.t1

>Gvermi7016.t1 ID=Gvermi7016.t1|Name=Gvermi7016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MKCNRDDRPCTMSLEQSNTNSNFDAVLLPVRGGEVNVQVNVGAVRDYLRT
NKPHTFTLYIYPERDNGLSYLRLATCIFSIAVQENRPTADVVLRRRIDGR
KPFLDKVRDTSQNREGSTSSAPPVLNEWLPMDLQDYAYGDLSDDFYNKYE
TVAVGGTFDRLHAGHRLLLTAAVWAAEQTLRIGVTSDTMLQAKEHKDLIQ
SLDTRCESAVAYSKRVKPSVPNVLVTHLTDSSGPTSYEPAINALVVSKET
APGALKINDVRIEAGLNPMTFIIVDVLDTKGVKLSSSALRKAEAGQKLQS
NTI*
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mRNA from alignment at ScGOVlb_24229:957507..958418+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7016.t1 ID=Gvermi7016.t1|Name=Gvermi7016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_24229:957507..958418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTGCAACCGTGATGACCGCCCGTGCACCATGAGTCTTGAGCAATC
CAACACCAATTCAAATTTCGACGCTGTTTTGCTTCCAGTTCGTGGTGGAG
AAGTCAACGTACAAGTGAATGTGGGAGCAGTTCGAGACTACCTCAGAACT
AATAAACCTCACACATTTACCTTATATATATACCCGGAGCGTGACAACGG
TTTAAGTTACCTTAGGCTTGCCACATGTATTTTCTCAATTGCTGTCCAGG
AAAACAGACCTACAGCTGATGTGGTACTTCGGAGACGCATAGACGGTCGC
AAACCGTTTCTCGACAAGGTTCGAGATACTTCGCAAAACAGGGAAGGTAG
TACTTCCAGTGCACCTCCAGTACTTAACGAATGGCTCCCAATGGATTTGC
AAGATTATGCATACGGGGATCTCTCAGATGATTTCTATAACAAGTACGAG
ACAGTGGCTGTAGGTGGAACTTTTGACAGATTACATGCGGGCCATCGACT
ACTCTTAACAGCTGCGGTGTGGGCTGCCGAACAAACGCTACGCATTGGCG
TAACGTCTGATACCATGCTCCAAGCGAAGGAGCATAAGGATCTGATACAA
AGCCTTGACACGAGATGTGAAAGCGCCGTGGCCTACTCGAAGCGCGTTAA
ACCGTCTGTTCCAAACGTACTCGTTACACACTTGACGGATTCTTCTGGCC
CAACATCTTATGAGCCAGCCATCAATGCCCTTGTGGTCTCCAAAGAAACG
GCTCCCGGAGCGCTCAAAATCAATGATGTACGCATAGAAGCTGGACTGAA
TCCGATGACTTTCATTATTGTCGACGTACTGGATACGAAGGGTGTGAAGC
TCAGTTCGTCAGCTTTGCGCAAGGCAGAAGCAGGGCAAAAGCTTCAATCA
AACACAATCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:957507..958418+

>Gvermi7016.t1 ID=Gvermi7016.t1|Name=Gvermi7016.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=912bp|location=Sequence derived from alignment at ScGOVlb_24229:957507..958418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTGCAACCGTGATGACCGCCCGTGCACCATGAGTCTTGAGCAATC
CAACACCAATTCAAATTTCGACGCTGTTTTGCTTCCAGTTCGTGGTGGAG
AAGTCAACGTACAAGTGAATGTGGGAGCAGTTCGAGACTACCTCAGAACT
AATAAACCTCACACATTTACCTTATATATATACCCGGAGCGTGACAACGG
TTTAAGTTACCTTAGGCTTGCCACATGTATTTTCTCAATTGCTGTCCAGG
AAAACAGACCTACAGCTGATGTGGTACTTCGGAGACGCATAGACGGTCGC
AAACCGTTTCTCGACAAGGTTCGAGATACTTCGCAAAACAGGGAAGGTAG
TACTTCCAGTGCACCTCCAGTACTTAACGAATGGCTCCCAATGGATTTGC
AAGATTATGCATACGGGGATCTCTCAGATGATTTCTATAACAAGTACGAG
ACAGTGGCTGTAGGTGGAACTTTTGACAGATTACATGCGGGCCATCGACT
ACTCTTAACAGCTGCGGTGTGGGCTGCCGAACAAACGCTACGCATTGGCG
TAACGTCTGATACCATGCTCCAAGCGAAGGAGCATAAGGATCTGATACAA
AGCCTTGACACGAGATGTGAAAGCGCCGTGGCCTACTCGAAGCGCGTTAA
ACCGTCTGTTCCAAACGTACTCGTTACACACTTGACGGATTCTTCTGGCC
CAACATCTTATGAGCCAGCCATCAATGCCCTTGTGGTCTCCAAAGAAACG
GCTCCCGGAGCGCTCAAAATCAATGATGTACGCATAGAAGCTGGACTGAA
TCCGATGACTTTCATTATTGTCGACGTACTGGATACGAAGGGTGTGAAGC
TCAGTTCGTCAGCTTTGCGCAAGGCAGAAGCAGGGCAAAAGCTTCAATCA
AACACAATCTAA
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