Gvermi7015.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7015.t1
Unique NameGvermi7015.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:956206..956732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7015Gvermi7015Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 956206..956732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7015.t1Gvermi7015.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 956206..956732 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7015.t1.start1Gvermi7015.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 956206..956208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7015.t1.CDS1Gvermi7015.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 956206..956398 +
Gvermi7015.t1.CDS2Gvermi7015.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 956539..956732 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7015.t1.exon1Gvermi7015.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 956206..956398 +
Gvermi7015.t1.exon2Gvermi7015.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 956539..956732 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7015.t1.intron1Gvermi7015.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 956399..956538 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7015.t1.stop1Gvermi7015.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 956730..956732 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7015.t1 ID=Gvermi7015.t1|Name=Gvermi7015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=129bp
MLAVSSALARAAALTAPKRGLAIVATVKQASDTSATQFPAPSHVSLASEA
ADIAHQIHAFYSNPDSVISLPEQTREALQAEVMKRVLAVPDAEISDAWAQ
QNLQVPAEIRLGDNPLFESAQHSRSSSK*
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spliced messenger RNA

>Gvermi7015.t1 ID=Gvermi7015.t1|Name=Gvermi7015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=387bp|location=Sequence derived from alignment at ScGOVlb_24229:956206..956732+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTGTGAGCTCCGCCCTCGCCCGTGCTGCGGCGCTAACTGCCCC
GAAACGCGGCCTCGCGATCGTCGCTACCGTCAAGCAGGCCTCGGACACAT
CGGCAACTCAGTTTCCGGCCCCATCCCATGTCAGTCTCGCGTCTGAAGCC
GCCGACATCGCCCACCAGATTCACGCCTTCTACTCCAATCCAGACAGCGT
CATTTCTCTCCCAGAGCAGACCAGAGAGGCCCTTCAAGCCGAGGTCATGA
AAAGGGTGTTAGCCGTTCCAGACGCGGAGATTTCCGACGCGTGGGCACAA
CAAAACCTGCAGGTTCCCGCCGAAATTCGTCTTGGCGACAATCCACTGTT
TGAAAGTGCTCAGCACTCGCGCTCCTCCTCCAAGTAG
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protein sequence of Gvermi7015.t1

>Gvermi7015.t1 ID=Gvermi7015.t1|Name=Gvermi7015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=129bp
MLAVSSALARAAALTAPKRGLAIVATVKQASDTSATQFPAPSHVSLASEA
ADIAHQIHAFYSNPDSVISLPEQTREALQAEVMKRVLAVPDAEISDAWAQ
QNLQVPAEIRLGDNPLFESAQHSRSSSK*
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mRNA from alignment at ScGOVlb_24229:956206..956732+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7015.t1 ID=Gvermi7015.t1|Name=Gvermi7015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=527bp|location=Sequence derived from alignment at ScGOVlb_24229:956206..956732+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGCTGTGAGCTCCGCCCTCGCCCGTGCTGCGGCGCTAACTGCCCC
GAAACGCGGCCTCGCGATCGTCGCTACCGTCAAGCAGGCCTCGGACACAT
CGGCAACTCAGTTTCCGGCCCCATCCCATGTCAGTCTCGCGTCTGAAGCC
GCCGACATCGCCCACCAGATTCACGCCTTCTACTCCAATCCAGGTAAGCC
ACCACAATTCGCGCTATCCTATGTTCAACGCACGGCACGTAACTCGCGCA
TCTTCGGAAAGCGATCAAATTGATGCTCCATATCAGGCGAAACACGGCCT
AACCCTCTGACATTGCTCGTTTGCTCGCATCAGACAGCGTCATTTCTCTC
CCAGAGCAGACCAGAGAGGCCCTTCAAGCCGAGGTCATGAAAAGGGTGTT
AGCCGTTCCAGACGCGGAGATTTCCGACGCGTGGGCACAACAAAACCTGC
AGGTTCCCGCCGAAATTCGTCTTGGCGACAATCCACTGTTTGAAAGTGCT
CAGCACTCGCGCTCCTCCTCCAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:956206..956732+

>Gvermi7015.t1 ID=Gvermi7015.t1|Name=Gvermi7015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=387bp|location=Sequence derived from alignment at ScGOVlb_24229:956206..956732+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGCTGTGAGCTCCGCCCTCGCCCGTGCTGCGGCGCTAACTGCCCC
GAAACGCGGCCTCGCGATCGTCGCTACCGTCAAGCAGGCCTCGGACACAT
CGGCAACTCAGTTTCCGGCCCCATCCCATGTCAGTCTCGCGTCTGAAGCC
GCCGACATCGCCCACCAGATTCACGCCTTCTACTCCAATCCAGACAGCGT
CATTTCTCTCCCAGAGCAGACCAGAGAGGCCCTTCAAGCCGAGGTCATGA
AAAGGGTGTTAGCCGTTCCAGACGCGGAGATTTCCGACGCGTGGGCACAA
CAAAACCTGCAGGTTCCCGCCGAAATTCGTCTTGGCGACAATCCACTGTT
TGAAAGTGCTCAGCACTCGCGCTCCTCCTCCAAGTAG
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