Gvermi7014.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7014.t1
Unique NameGvermi7014.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:951661..953153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7014Gvermi7014Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 951661..953153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7014.t1Gvermi7014.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 951661..953153 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7014.t1.start1Gvermi7014.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 951661..951663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7014.t1.CDS1Gvermi7014.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 951661..951790 +
Gvermi7014.t1.CDS2Gvermi7014.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 951886..953153 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7014.t1.exon1Gvermi7014.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 951661..951790 +
Gvermi7014.t1.exon2Gvermi7014.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 951886..953153 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7014.t1.intron1Gvermi7014.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 951791..951885 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7014.t1.stop1Gvermi7014.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 953151..953153 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7014.t1 ID=Gvermi7014.t1|Name=Gvermi7014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=466bp
MRLHTCISQCARRGSCFVLILLASFFFTLLVSSNAHLHHVDHTDQEIDAM
TLDDLLHTERDLRQQNAAVDKHVVSLKGRIEKLRFKQERLEDQKQKVGEA
KSWEARQKQAHIKELQRAKAEMEAKRQQIVILSEQAEKLRINIHEMQDKY
KSLNRKRLELQDKYLHPSLRELVVTEAARGGAVPEHLINKTVDEIIPDIQ
SSLRGILNVENQLHHASPLAGVFTVFCIYALAVSLVFTCMRYIMIAQRIM
TLRRMLFMADMSILFVWFLICVCYAAILIDPLEAMAREHGSMTMVVQILI
MAGLVGNVILRCFALCSYADSKGFMELFFVVFVAQHYYQAVWVTIVLDEP
VKASLWSYLGYASINASLAVYRARSFSRAMQTAQAEFCGTTAGKWESSWL
KSRVENVIDYLEDLFTHGIPSEEADVEDLCEEQRHSSRTRHGRQGRKELI
HVGVKSYSRPRDPRA*
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spliced messenger RNA

>Gvermi7014.t1 ID=Gvermi7014.t1|Name=Gvermi7014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:951661..953153+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTCCACACCTGCATTTCACAATGTGCGCGGAGAGGCAGCTGTTT
CGTTTTGATTCTTCTTGCGAGCTTTTTCTTTACACTCTTGGTTTCTTCGA
ATGCCCATTTGCACCATGTGGATCATACAGACCAAGAAATTGATGCCATG
ACTCTGGACGATCTACTCCACACTGAGCGAGACCTCCGGCAACAGAATGC
AGCAGTGGATAAACATGTCGTGTCTCTCAAAGGCCGTATTGAGAAGCTTC
GTTTCAAGCAAGAACGTCTGGAGGACCAGAAGCAAAAGGTAGGCGAAGCA
AAGAGCTGGGAAGCTAGGCAGAAGCAAGCACACATCAAAGAACTGCAACG
AGCCAAAGCAGAAATGGAAGCAAAAAGGCAACAGATAGTTATCCTAAGTG
AGCAGGCTGAAAAGCTCCGCATCAATATCCATGAGATGCAAGACAAGTAC
AAATCTTTGAATAGAAAGAGACTGGAGCTTCAAGATAAGTACCTTCATCC
TTCTCTTCGTGAACTGGTTGTCACTGAAGCTGCCAGAGGTGGGGCCGTGC
CCGAACACCTGATCAACAAGACCGTGGATGAAATCATTCCTGATATTCAA
AGCAGCTTAAGAGGAATCTTAAACGTTGAGAATCAGCTTCATCATGCCTC
GCCGTTAGCAGGTGTATTCACTGTCTTTTGCATATATGCACTCGCTGTTT
CTCTCGTTTTCACATGCATGAGGTACATTATGATTGCCCAACGTATTATG
ACTTTACGTCGGATGTTGTTTATGGCCGACATGAGTATTCTGTTTGTTTG
GTTTCTTATCTGTGTTTGTTATGCAGCCATTCTGATTGATCCTCTGGAGG
CCATGGCGCGGGAGCATGGCTCTATGACAATGGTCGTTCAGATTCTCATC
ATGGCTGGCCTAGTTGGTAATGTTATCTTAAGATGCTTTGCTCTATGCTC
CTATGCCGATAGCAAGGGTTTCATGGAATTGTTTTTCGTCGTTTTTGTTG
CCCAGCACTACTATCAAGCGGTATGGGTGACGATTGTGTTGGATGAACCT
GTTAAAGCCAGTCTATGGTCGTACTTGGGTTATGCGTCTATAAACGCATC
CCTCGCAGTGTATCGTGCACGCTCTTTCTCTCGCGCAATGCAGACGGCGC
AGGCTGAATTCTGTGGTACAACAGCTGGTAAATGGGAGAGCAGCTGGCTC
AAGTCTCGCGTTGAAAACGTTATCGACTATCTTGAGGACTTGTTTACGCA
TGGGATTCCATCTGAGGAAGCAGACGTTGAAGATCTGTGCGAAGAGCAGC
GTCACAGCAGCAGGACTAGGCATGGCAGACAAGGCCGTAAAGAGTTGATA
CATGTTGGAGTCAAGTCTTATTCGCGGCCAAGAGATCCGAGGGCGTAA
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protein sequence of Gvermi7014.t1

>Gvermi7014.t1 ID=Gvermi7014.t1|Name=Gvermi7014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=466bp
MRLHTCISQCARRGSCFVLILLASFFFTLLVSSNAHLHHVDHTDQEIDAM
TLDDLLHTERDLRQQNAAVDKHVVSLKGRIEKLRFKQERLEDQKQKVGEA
KSWEARQKQAHIKELQRAKAEMEAKRQQIVILSEQAEKLRINIHEMQDKY
KSLNRKRLELQDKYLHPSLRELVVTEAARGGAVPEHLINKTVDEIIPDIQ
SSLRGILNVENQLHHASPLAGVFTVFCIYALAVSLVFTCMRYIMIAQRIM
TLRRMLFMADMSILFVWFLICVCYAAILIDPLEAMAREHGSMTMVVQILI
MAGLVGNVILRCFALCSYADSKGFMELFFVVFVAQHYYQAVWVTIVLDEP
VKASLWSYLGYASINASLAVYRARSFSRAMQTAQAEFCGTTAGKWESSWL
KSRVENVIDYLEDLFTHGIPSEEADVEDLCEEQRHSSRTRHGRQGRKELI
HVGVKSYSRPRDPRA*
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mRNA from alignment at ScGOVlb_24229:951661..953153+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7014.t1 ID=Gvermi7014.t1|Name=Gvermi7014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1493bp|location=Sequence derived from alignment at ScGOVlb_24229:951661..953153+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACTCCACACCTGCATTTCACAATGTGCGCGGAGAGGCAGCTGTTT
CGTTTTGATTCTTCTTGCGAGCTTTTTCTTTACACTCTTGGTTTCTTCGA
ATGCCCATTTGCACCATGTGGATCATACAGGTAAGATCGTCCTCATTTAA
GAAGCCAATACTCACAAGCATCAGGAATGAGAAAAGTTGCTGACCAAGTT
CTTTCTCTTCCCTGATATGAGGCAGACCAAGAAATTGATGCCATGACTCT
GGACGATCTACTCCACACTGAGCGAGACCTCCGGCAACAGAATGCAGCAG
TGGATAAACATGTCGTGTCTCTCAAAGGCCGTATTGAGAAGCTTCGTTTC
AAGCAAGAACGTCTGGAGGACCAGAAGCAAAAGGTAGGCGAAGCAAAGAG
CTGGGAAGCTAGGCAGAAGCAAGCACACATCAAAGAACTGCAACGAGCCA
AAGCAGAAATGGAAGCAAAAAGGCAACAGATAGTTATCCTAAGTGAGCAG
GCTGAAAAGCTCCGCATCAATATCCATGAGATGCAAGACAAGTACAAATC
TTTGAATAGAAAGAGACTGGAGCTTCAAGATAAGTACCTTCATCCTTCTC
TTCGTGAACTGGTTGTCACTGAAGCTGCCAGAGGTGGGGCCGTGCCCGAA
CACCTGATCAACAAGACCGTGGATGAAATCATTCCTGATATTCAAAGCAG
CTTAAGAGGAATCTTAAACGTTGAGAATCAGCTTCATCATGCCTCGCCGT
TAGCAGGTGTATTCACTGTCTTTTGCATATATGCACTCGCTGTTTCTCTC
GTTTTCACATGCATGAGGTACATTATGATTGCCCAACGTATTATGACTTT
ACGTCGGATGTTGTTTATGGCCGACATGAGTATTCTGTTTGTTTGGTTTC
TTATCTGTGTTTGTTATGCAGCCATTCTGATTGATCCTCTGGAGGCCATG
GCGCGGGAGCATGGCTCTATGACAATGGTCGTTCAGATTCTCATCATGGC
TGGCCTAGTTGGTAATGTTATCTTAAGATGCTTTGCTCTATGCTCCTATG
CCGATAGCAAGGGTTTCATGGAATTGTTTTTCGTCGTTTTTGTTGCCCAG
CACTACTATCAAGCGGTATGGGTGACGATTGTGTTGGATGAACCTGTTAA
AGCCAGTCTATGGTCGTACTTGGGTTATGCGTCTATAAACGCATCCCTCG
CAGTGTATCGTGCACGCTCTTTCTCTCGCGCAATGCAGACGGCGCAGGCT
GAATTCTGTGGTACAACAGCTGGTAAATGGGAGAGCAGCTGGCTCAAGTC
TCGCGTTGAAAACGTTATCGACTATCTTGAGGACTTGTTTACGCATGGGA
TTCCATCTGAGGAAGCAGACGTTGAAGATCTGTGCGAAGAGCAGCGTCAC
AGCAGCAGGACTAGGCATGGCAGACAAGGCCGTAAAGAGTTGATACATGT
TGGAGTCAAGTCTTATTCGCGGCCAAGAGATCCGAGGGCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:951661..953153+

>Gvermi7014.t1 ID=Gvermi7014.t1|Name=Gvermi7014.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:951661..953153+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACTCCACACCTGCATTTCACAATGTGCGCGGAGAGGCAGCTGTTT
CGTTTTGATTCTTCTTGCGAGCTTTTTCTTTACACTCTTGGTTTCTTCGA
ATGCCCATTTGCACCATGTGGATCATACAGACCAAGAAATTGATGCCATG
ACTCTGGACGATCTACTCCACACTGAGCGAGACCTCCGGCAACAGAATGC
AGCAGTGGATAAACATGTCGTGTCTCTCAAAGGCCGTATTGAGAAGCTTC
GTTTCAAGCAAGAACGTCTGGAGGACCAGAAGCAAAAGGTAGGCGAAGCA
AAGAGCTGGGAAGCTAGGCAGAAGCAAGCACACATCAAAGAACTGCAACG
AGCCAAAGCAGAAATGGAAGCAAAAAGGCAACAGATAGTTATCCTAAGTG
AGCAGGCTGAAAAGCTCCGCATCAATATCCATGAGATGCAAGACAAGTAC
AAATCTTTGAATAGAAAGAGACTGGAGCTTCAAGATAAGTACCTTCATCC
TTCTCTTCGTGAACTGGTTGTCACTGAAGCTGCCAGAGGTGGGGCCGTGC
CCGAACACCTGATCAACAAGACCGTGGATGAAATCATTCCTGATATTCAA
AGCAGCTTAAGAGGAATCTTAAACGTTGAGAATCAGCTTCATCATGCCTC
GCCGTTAGCAGGTGTATTCACTGTCTTTTGCATATATGCACTCGCTGTTT
CTCTCGTTTTCACATGCATGAGGTACATTATGATTGCCCAACGTATTATG
ACTTTACGTCGGATGTTGTTTATGGCCGACATGAGTATTCTGTTTGTTTG
GTTTCTTATCTGTGTTTGTTATGCAGCCATTCTGATTGATCCTCTGGAGG
CCATGGCGCGGGAGCATGGCTCTATGACAATGGTCGTTCAGATTCTCATC
ATGGCTGGCCTAGTTGGTAATGTTATCTTAAGATGCTTTGCTCTATGCTC
CTATGCCGATAGCAAGGGTTTCATGGAATTGTTTTTCGTCGTTTTTGTTG
CCCAGCACTACTATCAAGCGGTATGGGTGACGATTGTGTTGGATGAACCT
GTTAAAGCCAGTCTATGGTCGTACTTGGGTTATGCGTCTATAAACGCATC
CCTCGCAGTGTATCGTGCACGCTCTTTCTCTCGCGCAATGCAGACGGCGC
AGGCTGAATTCTGTGGTACAACAGCTGGTAAATGGGAGAGCAGCTGGCTC
AAGTCTCGCGTTGAAAACGTTATCGACTATCTTGAGGACTTGTTTACGCA
TGGGATTCCATCTGAGGAAGCAGACGTTGAAGATCTGTGCGAAGAGCAGC
GTCACAGCAGCAGGACTAGGCATGGCAGACAAGGCCGTAAAGAGTTGATA
CATGTTGGAGTCAAGTCTTATTCGCGGCCAAGAGATCCGAGGGCGTAA
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