Gvermi7013.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7013.t1
Unique Name	Gvermi7013.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:949819..951168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173021.ALWA01000035_gene3833
Preferred name	hemN
PFAMs	HemN_C,Radical_SAM
Max annot lvl	1117\|Cyanobacteria
GOs	GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0018130,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	1.3e-86
EggNOG OGs	COG0635@1\|root,COG0635@2\|Bacteria,1G0F9@1117\|Cyanobacteria
Description	Involved in the biosynthesis of porphyrin-containing compound
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7013	Gvermi7013	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 949819..951168 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7013.t1.start1	Gvermi7013.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 949819..949821 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7013.t1.CDS1	Gvermi7013.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 949819..951168 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7013.t1.exon1	Gvermi7013.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 949819..951168 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7013.t1.stop1	Gvermi7013.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 951166..951168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7013.t1	Gvermi7013.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 949819..951168 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:949819..951168+
coding sequence from alignment at ScGOVlb_24229:949819..951168+

mRNA sequence

>Gvermi7013.t1 ID=Gvermi7013.t1|Name=Gvermi7013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=450bp
MVRPPTSFVPPAPPSSLYIHLPFCLQRCAYCAFPVIVTPERPAAQPPPLH
LHYVQLLQREVSAFFRLYRRPLAPLKTLYLGGGTPSLLHPHLLHSLLHTL
RKHVPFSPHLEFTCEMDPGTFSLQQARQFADAGVNRASVGAQTFDAQLLK
LTRRLHSPSDIATAVSALRRASISNVSLDLIAALPHQTEHTWRSSLNEAL
ALDPQHISVYDLTLEPGTPFARSYSPGVHPLPHENVSARMLTDAFQTLSR
AGYHHYEVSNFARRDHNRDFRSHHNLAYWKNQSFFAFGLGATSLVDRVRF
ARPRLLRQYQEYVNRLDSFTGQPSDLDDPQLLRHAAFPGARVQTQVECLE
DYLINRFRLMSDGVNMKQLRAAFGPDAEHRLRDAAEQCSHLIDEGLLFMQ
SCDAEGDILRLTEKGALVENSIVADLLWHAIWKHVEPGHAEAHDTERQS*

spliced messenger RNA

>Gvermi7013.t1 ID=Gvermi7013.t1|Name=Gvermi7013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_24229:949819..951168+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCCCGCCGACGTCCTTCGTGCCGCCCGCCCCCCCCTCATCGCT
ATACATCCACCTCCCGTTCTGTTTGCAGCGCTGCGCGTACTGCGCCTTCC
CCGTCATCGTCACGCCAGAGCGCCCCGCTGCCCAACCCCCGCCGCTGCAC
CTCCACTACGTGCAGTTACTGCAGCGCGAGGTCTCCGCCTTCTTCCGTCT
GTATCGCCGCCCGCTCGCCCCCTTGAAAACGCTGTATCTCGGCGGCGGCA
CGCCCTCCCTGCTGCACCCGCACCTGCTTCACTCCCTTCTGCACACCCTC
CGCAAACATGTGCCCTTCTCGCCGCACCTCGAGTTCACCTGCGAGATGGA
CCCCGGCACCTTTTCTCTGCAACAAGCGCGCCAATTCGCTGACGCTGGCG
TTAACCGTGCCTCGGTCGGCGCCCAGACCTTCGACGCCCAGCTGCTCAAG
CTTACGCGCCGCCTGCACTCCCCGTCTGACATAGCCACCGCCGTCTCCGC
GCTGCGCCGCGCCTCTATCTCCAACGTGTCCCTTGACCTCATTGCCGCCT
TGCCGCACCAGACCGAACATACCTGGCGCTCATCTCTCAACGAAGCCCTT
GCGCTTGATCCGCAACACATCTCAGTCTATGACCTCACTCTCGAACCCGG
AACCCCATTTGCACGCTCATACTCGCCCGGTGTTCACCCCTTACCGCACG
AAAACGTCTCCGCCCGAATGCTTACTGATGCGTTTCAAACTCTCTCGCGC
GCGGGCTATCACCACTACGAGGTTAGTAACTTTGCCAGGCGCGACCATAA
CCGTGATTTTCGCTCTCACCACAACCTTGCGTACTGGAAGAATCAGTCAT
TCTTTGCCTTTGGGTTGGGAGCTACTAGTCTCGTCGATCGCGTCCGATTT
GCAAGGCCCCGCCTTCTACGCCAGTACCAAGAGTACGTGAATCGGCTTGA
CAGTTTTACTGGTCAACCATCCGATCTTGATGACCCTCAGTTGCTAAGAC
ACGCCGCGTTTCCAGGTGCCCGCGTACAGACTCAAGTCGAATGCCTTGAA
GACTACCTCATCAACAGATTCCGATTGATGTCTGACGGTGTCAACATGAA
GCAGCTGCGCGCCGCTTTCGGACCTGACGCCGAACACAGACTCCGAGATG
CAGCGGAACAATGCAGCCATCTCATTGATGAAGGCCTGCTGTTCATGCAA
AGCTGCGATGCGGAGGGAGATATACTTCGCCTAACTGAGAAAGGTGCATT
GGTCGAGAATTCCATTGTAGCTGATTTGTTATGGCACGCGATATGGAAGC
ATGTGGAGCCGGGCCATGCGGAAGCCCACGACACCGAACGGCAATCCTAA

protein sequence of Gvermi7013.t1

>Gvermi7013.t1 ID=Gvermi7013.t1|Name=Gvermi7013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=450bp
MVRPPTSFVPPAPPSSLYIHLPFCLQRCAYCAFPVIVTPERPAAQPPPLH
LHYVQLLQREVSAFFRLYRRPLAPLKTLYLGGGTPSLLHPHLLHSLLHTL
RKHVPFSPHLEFTCEMDPGTFSLQQARQFADAGVNRASVGAQTFDAQLLK
LTRRLHSPSDIATAVSALRRASISNVSLDLIAALPHQTEHTWRSSLNEAL
ALDPQHISVYDLTLEPGTPFARSYSPGVHPLPHENVSARMLTDAFQTLSR
AGYHHYEVSNFARRDHNRDFRSHHNLAYWKNQSFFAFGLGATSLVDRVRF
ARPRLLRQYQEYVNRLDSFTGQPSDLDDPQLLRHAAFPGARVQTQVECLE
DYLINRFRLMSDGVNMKQLRAAFGPDAEHRLRDAAEQCSHLIDEGLLFMQ
SCDAEGDILRLTEKGALVENSIVADLLWHAIWKHVEPGHAEAHDTERQS*

mRNA from alignment at ScGOVlb_24229:949819..951168+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7013.t1 ID=Gvermi7013.t1|Name=Gvermi7013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_24229:949819..951168+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCGCCCGCCGACGTCCTTCGTGCCGCCCGCCCCCCCCTCATCGCT
ATACATCCACCTCCCGTTCTGTTTGCAGCGCTGCGCGTACTGCGCCTTCC
CCGTCATCGTCACGCCAGAGCGCCCCGCTGCCCAACCCCCGCCGCTGCAC
CTCCACTACGTGCAGTTACTGCAGCGCGAGGTCTCCGCCTTCTTCCGTCT
GTATCGCCGCCCGCTCGCCCCCTTGAAAACGCTGTATCTCGGCGGCGGCA
CGCCCTCCCTGCTGCACCCGCACCTGCTTCACTCCCTTCTGCACACCCTC
CGCAAACATGTGCCCTTCTCGCCGCACCTCGAGTTCACCTGCGAGATGGA
CCCCGGCACCTTTTCTCTGCAACAAGCGCGCCAATTCGCTGACGCTGGCG
TTAACCGTGCCTCGGTCGGCGCCCAGACCTTCGACGCCCAGCTGCTCAAG
CTTACGCGCCGCCTGCACTCCCCGTCTGACATAGCCACCGCCGTCTCCGC
GCTGCGCCGCGCCTCTATCTCCAACGTGTCCCTTGACCTCATTGCCGCCT
TGCCGCACCAGACCGAACATACCTGGCGCTCATCTCTCAACGAAGCCCTT
GCGCTTGATCCGCAACACATCTCAGTCTATGACCTCACTCTCGAACCCGG
AACCCCATTTGCACGCTCATACTCGCCCGGTGTTCACCCCTTACCGCACG
AAAACGTCTCCGCCCGAATGCTTACTGATGCGTTTCAAACTCTCTCGCGC
GCGGGCTATCACCACTACGAGGTTAGTAACTTTGCCAGGCGCGACCATAA
CCGTGATTTTCGCTCTCACCACAACCTTGCGTACTGGAAGAATCAGTCAT
TCTTTGCCTTTGGGTTGGGAGCTACTAGTCTCGTCGATCGCGTCCGATTT
GCAAGGCCCCGCCTTCTACGCCAGTACCAAGAGTACGTGAATCGGCTTGA
CAGTTTTACTGGTCAACCATCCGATCTTGATGACCCTCAGTTGCTAAGAC
ACGCCGCGTTTCCAGGTGCCCGCGTACAGACTCAAGTCGAATGCCTTGAA
GACTACCTCATCAACAGATTCCGATTGATGTCTGACGGTGTCAACATGAA
GCAGCTGCGCGCCGCTTTCGGACCTGACGCCGAACACAGACTCCGAGATG
CAGCGGAACAATGCAGCCATCTCATTGATGAAGGCCTGCTGTTCATGCAA
AGCTGCGATGCGGAGGGAGATATACTTCGCCTAACTGAGAAAGGTGCATT
GGTCGAGAATTCCATTGTAGCTGATTTGTTATGGCACGCGATATGGAAGC
ATGTGGAGCCGGGCCATGCGGAAGCCCACGACACCGAACGGCAATCCTAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:949819..951168+

>Gvermi7013.t1 ID=Gvermi7013.t1|Name=Gvermi7013.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1350bp|location=Sequence derived from alignment at ScGOVlb_24229:949819..951168+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCGCCCGCCGACGTCCTTCGTGCCGCCCGCCCCCCCCTCATCGCT
ATACATCCACCTCCCGTTCTGTTTGCAGCGCTGCGCGTACTGCGCCTTCC
CCGTCATCGTCACGCCAGAGCGCCCCGCTGCCCAACCCCCGCCGCTGCAC
CTCCACTACGTGCAGTTACTGCAGCGCGAGGTCTCCGCCTTCTTCCGTCT
GTATCGCCGCCCGCTCGCCCCCTTGAAAACGCTGTATCTCGGCGGCGGCA
CGCCCTCCCTGCTGCACCCGCACCTGCTTCACTCCCTTCTGCACACCCTC
CGCAAACATGTGCCCTTCTCGCCGCACCTCGAGTTCACCTGCGAGATGGA
CCCCGGCACCTTTTCTCTGCAACAAGCGCGCCAATTCGCTGACGCTGGCG
TTAACCGTGCCTCGGTCGGCGCCCAGACCTTCGACGCCCAGCTGCTCAAG
CTTACGCGCCGCCTGCACTCCCCGTCTGACATAGCCACCGCCGTCTCCGC
GCTGCGCCGCGCCTCTATCTCCAACGTGTCCCTTGACCTCATTGCCGCCT
TGCCGCACCAGACCGAACATACCTGGCGCTCATCTCTCAACGAAGCCCTT
GCGCTTGATCCGCAACACATCTCAGTCTATGACCTCACTCTCGAACCCGG
AACCCCATTTGCACGCTCATACTCGCCCGGTGTTCACCCCTTACCGCACG
AAAACGTCTCCGCCCGAATGCTTACTGATGCGTTTCAAACTCTCTCGCGC
GCGGGCTATCACCACTACGAGGTTAGTAACTTTGCCAGGCGCGACCATAA
CCGTGATTTTCGCTCTCACCACAACCTTGCGTACTGGAAGAATCAGTCAT
TCTTTGCCTTTGGGTTGGGAGCTACTAGTCTCGTCGATCGCGTCCGATTT
GCAAGGCCCCGCCTTCTACGCCAGTACCAAGAGTACGTGAATCGGCTTGA
CAGTTTTACTGGTCAACCATCCGATCTTGATGACCCTCAGTTGCTAAGAC
ACGCCGCGTTTCCAGGTGCCCGCGTACAGACTCAAGTCGAATGCCTTGAA
GACTACCTCATCAACAGATTCCGATTGATGTCTGACGGTGTCAACATGAA
GCAGCTGCGCGCCGCTTTCGGACCTGACGCCGAACACAGACTCCGAGATG
CAGCGGAACAATGCAGCCATCTCATTGATGAAGGCCTGCTGTTCATGCAA
AGCTGCGATGCGGAGGGAGATATACTTCGCCTAACTGAGAAAGGTGCATT
GGTCGAGAATTCCATTGTAGCTGATTTGTTATGGCACGCGATATGGAAGC
ATGTGGAGCCGGGCCATGCGGAAGCCCACGACACCGAACGGCAATCCTAA