Gvermi7006.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7006.t1
Unique NameGvermi7006.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:913390..914127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog716544.wcw_0842
PFAMsCob_adeno_trans
Max annot lvl204428|Chlamydiae
KEGG rclassRC00533
KEGG koko:K00798
KEGG ReactionR01492,R05220,R07268
KEGG Pathwayko00860,ko01100,map00860,map01100
KEGG ModuleM00122
Evalue6.1e-52
EggNOG OGsCOG2096@1|root,COG2096@2|Bacteria,2JFYG@204428|Chlamydiae
EC2.5.1.17
DescriptionCobalamin adenosyltransferase
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7006Gvermi7006Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 913390..914127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7006.t1Gvermi7006.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 913390..914127 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7006.t1.start1Gvermi7006.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 913390..913392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7006.t1.CDS1Gvermi7006.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 913390..913481 +
Gvermi7006.t1.CDS2Gvermi7006.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 913566..914127 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7006.t1.exon1Gvermi7006.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 913390..913481 +
Gvermi7006.t1.exon2Gvermi7006.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 913566..914127 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7006.t1.intron1Gvermi7006.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 913482..913565 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7006.t1.stop1Gvermi7006.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 914125..914127 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7006.t1 ID=Gvermi7006.t1|Name=Gvermi7006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=218bp
MKIYTGTGDDGSTSLFNGSRVPKTHILVHGYGIVDECNSAIGLACSHLEM
FVPSPDHKHVCHPSERTILIARLQLVQNFLFDLGAYLATPRKKSPTFKVN
RTEFPDKAATDLERWIDDMDAKLPELTTFLLPGGHPASASLHLGRTIARR
AERMLTPLYVEEQQIEPGAYKFLNRLSDFLFVASRMANKIVSVQDVKWRE
NRSSLNDEANANAPINW*
back to top

spliced messenger RNA

>Gvermi7006.t1 ID=Gvermi7006.t1|Name=Gvermi7006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:913390..914127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATATACACCGGCACTGGCGATGACGGTAGCACCAGTCTGTTCAA
TGGATCACGTGTGCCGAAGACACACATTTTAGTGCATGGCTATGGAATTG
TAGATGAATGCAACTCCGCAATTGGATTGGCTTGCTCTCATCTGGAAATG
TTTGTTCCATCTCCCGATCACAAGCACGTGTGTCACCCTTCCGAACGAAC
CATTTTAATTGCGCGTCTACAGCTGGTACAAAACTTTCTGTTCGATCTGG
GTGCCTATCTCGCGACACCGCGCAAGAAGTCACCCACTTTCAAGGTGAAT
CGCACTGAATTTCCGGATAAGGCAGCAACAGATTTGGAAAGATGGATCGA
TGATATGGATGCCAAGCTTCCTGAGCTGACCACCTTTTTATTGCCCGGCG
GACATCCTGCCTCGGCATCGCTTCATCTCGGGCGAACTATTGCCAGACGC
GCAGAGCGTATGCTCACGCCTTTGTATGTTGAAGAGCAGCAGATTGAACC
CGGGGCCTACAAGTTCCTCAATCGCTTGTCAGATTTTTTGTTCGTTGCAT
CCAGAATGGCAAACAAGATTGTCTCGGTTCAGGATGTGAAGTGGAGAGAA
AATCGCTCCTCTCTAAATGATGAGGCTAACGCCAACGCTCCGATCAATTG
GTGA
back to top

protein sequence of Gvermi7006.t1

>Gvermi7006.t1 ID=Gvermi7006.t1|Name=Gvermi7006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MKIYTGTGDDGSTSLFNGSRVPKTHILVHGYGIVDECNSAIGLACSHLEM
FVPSPDHKHVCHPSERTILIARLQLVQNFLFDLGAYLATPRKKSPTFKVN
RTEFPDKAATDLERWIDDMDAKLPELTTFLLPGGHPASASLHLGRTIARR
AERMLTPLYVEEQQIEPGAYKFLNRLSDFLFVASRMANKIVSVQDVKWRE
NRSSLNDEANANAPINW*
back to top

mRNA from alignment at ScGOVlb_24229:913390..914127+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7006.t1 ID=Gvermi7006.t1|Name=Gvermi7006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_24229:913390..914127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATATACACCGGCACTGGCGATGACGGTAGCACCAGTCTGTTCAA
TGGATCACGTGTGCCGAAGACACACATTTTAGTGCATGGCTAGTAAGTAC
TTTCTATTTTCACTCTATTGTCATATTGTCCGCATCAATAACGAAGCAAG
TGGTCTGACAGCCCTTTTTTTCTCAGTGGAATTGTAGATGAATGCAACTC
CGCAATTGGATTGGCTTGCTCTCATCTGGAAATGTTTGTTCCATCTCCCG
ATCACAAGCACGTGTGTCACCCTTCCGAACGAACCATTTTAATTGCGCGT
CTACAGCTGGTACAAAACTTTCTGTTCGATCTGGGTGCCTATCTCGCGAC
ACCGCGCAAGAAGTCACCCACTTTCAAGGTGAATCGCACTGAATTTCCGG
ATAAGGCAGCAACAGATTTGGAAAGATGGATCGATGATATGGATGCCAAG
CTTCCTGAGCTGACCACCTTTTTATTGCCCGGCGGACATCCTGCCTCGGC
ATCGCTTCATCTCGGGCGAACTATTGCCAGACGCGCAGAGCGTATGCTCA
CGCCTTTGTATGTTGAAGAGCAGCAGATTGAACCCGGGGCCTACAAGTTC
CTCAATCGCTTGTCAGATTTTTTGTTCGTTGCATCCAGAATGGCAAACAA
GATTGTCTCGGTTCAGGATGTGAAGTGGAGAGAAAATCGCTCCTCTCTAA
ATGATGAGGCTAACGCCAACGCTCCGATCAATTGGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:913390..914127+

>Gvermi7006.t1 ID=Gvermi7006.t1|Name=Gvermi7006.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:913390..914127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATATACACCGGCACTGGCGATGACGGTAGCACCAGTCTGTTCAA
TGGATCACGTGTGCCGAAGACACACATTTTAGTGCATGGCTATGGAATTG
TAGATGAATGCAACTCCGCAATTGGATTGGCTTGCTCTCATCTGGAAATG
TTTGTTCCATCTCCCGATCACAAGCACGTGTGTCACCCTTCCGAACGAAC
CATTTTAATTGCGCGTCTACAGCTGGTACAAAACTTTCTGTTCGATCTGG
GTGCCTATCTCGCGACACCGCGCAAGAAGTCACCCACTTTCAAGGTGAAT
CGCACTGAATTTCCGGATAAGGCAGCAACAGATTTGGAAAGATGGATCGA
TGATATGGATGCCAAGCTTCCTGAGCTGACCACCTTTTTATTGCCCGGCG
GACATCCTGCCTCGGCATCGCTTCATCTCGGGCGAACTATTGCCAGACGC
GCAGAGCGTATGCTCACGCCTTTGTATGTTGAAGAGCAGCAGATTGAACC
CGGGGCCTACAAGTTCCTCAATCGCTTGTCAGATTTTTTGTTCGTTGCAT
CCAGAATGGCAAACAAGATTGTCTCGGTTCAGGATGTGAAGTGGAGAGAA
AATCGCTCCTCTCTAAATGATGAGGCTAACGCCAACGCTCCGATCAATTG
GTGA
back to top