Gvermi7000.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7000.t1
Unique Name	Gvermi7000.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:885223..886230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005850934.1
Max annot lvl	3041\|Chlorophyta
Evalue	2.7e-08
EggNOG OGs	2EZ9K@1\|root,2T0MM@2759\|Eukaryota,382NA@33090\|Viridiplantae,34NDG@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7000	Gvermi7000	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 885223..886230 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7000.t1.start1	Gvermi7000.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 885223..885225 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7000.t1.CDS1	Gvermi7000.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 885223..886230 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7000.t1.exon1	Gvermi7000.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 885223..886230 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7000.t1.stop1	Gvermi7000.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 886228..886230 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7000.t1	Gvermi7000.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 885223..886230 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:885223..886230+
coding sequence from alignment at ScGOVlb_24229:885223..886230+

mRNA sequence

>Gvermi7000.t1 ID=Gvermi7000.t1|Name=Gvermi7000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MTSAKLPSKTTFTFRRYVDAHDRDQVRNICARVYNSQDYVPRLLPAYASS
ANCNPFVLDSPCGITAFIIVRYQQFSLKPHHLPEREVYIEAVRVREDLRG
IGVATIILSEASKMIHKSRDHLSTVRILSTTIPQNKPMIRVFHKSGWKQV
SSMVIWPRQDAVRSFKSTEKSMLQSLSIAPSISSTTLASQWRQVPTSTDI
SALITQLRNNESRFFRPGYFEVESLSCSSFFLVDEHAEREQRSVWRLDVD
AKLVGLLFVRPQNLHPTAREPQNIISACVNDTDVAESVVVFGEKLFNKAN
FHVSFDEGVTVDMMQNSPLFSRVQCAPFLVYEYKG*

spliced messenger RNA

>Gvermi7000.t1 ID=Gvermi7000.t1|Name=Gvermi7000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24229:885223..886230+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCAGCAAAGCTCCCGAGCAAAACAACATTTACATTCCGCCGTTA
CGTCGATGCCCATGACCGAGACCAAGTCAGAAACATCTGCGCCAGAGTTT
ACAATTCTCAAGATTATGTACCGCGTCTACTTCCTGCTTATGCCTCTAGC
GCTAACTGTAATCCCTTCGTTCTGGACAGCCCCTGTGGCATCACTGCCTT
CATCATCGTGCGCTACCAACAGTTTTCGCTAAAACCGCATCACCTTCCTG
AACGAGAAGTCTACATCGAAGCCGTGCGCGTGCGAGAAGACTTGCGCGGA
ATTGGCGTAGCAACAATCATTTTGTCAGAGGCATCAAAAATGATTCACAA
GTCGCGGGATCACTTGTCTACCGTTCGCATACTCTCGACCACCATCCCTC
AAAACAAGCCCATGATTCGAGTGTTCCACAAGTCCGGATGGAAACAAGTG
AGTAGCATGGTCATCTGGCCGAGGCAAGATGCTGTTCGCAGCTTTAAAAG
CACCGAAAAGTCAATGTTGCAATCTCTAAGCATTGCTCCCAGCATTTCAT
CCACCACCCTGGCATCGCAATGGCGACAGGTGCCTACTTCTACAGACATC
TCTGCCCTCATAACGCAGCTACGAAACAATGAGTCACGTTTTTTCCGACC
TGGCTATTTTGAAGTTGAAAGTCTTAGTTGCTCCTCCTTCTTCTTGGTGG
ATGAGCATGCGGAGCGTGAACAGCGATCAGTTTGGCGCCTCGATGTTGAT
GCCAAATTAGTTGGTTTGCTTTTCGTTAGGCCTCAAAATCTTCATCCCAC
AGCTCGAGAGCCTCAAAATATAATTTCCGCCTGCGTGAATGACACAGACG
TTGCGGAGAGTGTAGTCGTGTTCGGCGAAAAGTTGTTCAACAAGGCCAAT
TTCCACGTATCTTTTGACGAGGGTGTGACTGTAGATATGATGCAAAACTC
GCCCTTATTCTCCCGTGTGCAATGCGCCCCCTTTCTCGTATACGAATACA
AGGGATGA

protein sequence of Gvermi7000.t1

>Gvermi7000.t1 ID=Gvermi7000.t1|Name=Gvermi7000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MTSAKLPSKTTFTFRRYVDAHDRDQVRNICARVYNSQDYVPRLLPAYASS
ANCNPFVLDSPCGITAFIIVRYQQFSLKPHHLPEREVYIEAVRVREDLRG
IGVATIILSEASKMIHKSRDHLSTVRILSTTIPQNKPMIRVFHKSGWKQV
SSMVIWPRQDAVRSFKSTEKSMLQSLSIAPSISSTTLASQWRQVPTSTDI
SALITQLRNNESRFFRPGYFEVESLSCSSFFLVDEHAEREQRSVWRLDVD
AKLVGLLFVRPQNLHPTAREPQNIISACVNDTDVAESVVVFGEKLFNKAN
FHVSFDEGVTVDMMQNSPLFSRVQCAPFLVYEYKG*

mRNA from alignment at ScGOVlb_24229:885223..886230+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7000.t1 ID=Gvermi7000.t1|Name=Gvermi7000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24229:885223..886230+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCAGCAAAGCTCCCGAGCAAAACAACATTTACATTCCGCCGTTA
CGTCGATGCCCATGACCGAGACCAAGTCAGAAACATCTGCGCCAGAGTTT
ACAATTCTCAAGATTATGTACCGCGTCTACTTCCTGCTTATGCCTCTAGC
GCTAACTGTAATCCCTTCGTTCTGGACAGCCCCTGTGGCATCACTGCCTT
CATCATCGTGCGCTACCAACAGTTTTCGCTAAAACCGCATCACCTTCCTG
AACGAGAAGTCTACATCGAAGCCGTGCGCGTGCGAGAAGACTTGCGCGGA
ATTGGCGTAGCAACAATCATTTTGTCAGAGGCATCAAAAATGATTCACAA
GTCGCGGGATCACTTGTCTACCGTTCGCATACTCTCGACCACCATCCCTC
AAAACAAGCCCATGATTCGAGTGTTCCACAAGTCCGGATGGAAACAAGTG
AGTAGCATGGTCATCTGGCCGAGGCAAGATGCTGTTCGCAGCTTTAAAAG
CACCGAAAAGTCAATGTTGCAATCTCTAAGCATTGCTCCCAGCATTTCAT
CCACCACCCTGGCATCGCAATGGCGACAGGTGCCTACTTCTACAGACATC
TCTGCCCTCATAACGCAGCTACGAAACAATGAGTCACGTTTTTTCCGACC
TGGCTATTTTGAAGTTGAAAGTCTTAGTTGCTCCTCCTTCTTCTTGGTGG
ATGAGCATGCGGAGCGTGAACAGCGATCAGTTTGGCGCCTCGATGTTGAT
GCCAAATTAGTTGGTTTGCTTTTCGTTAGGCCTCAAAATCTTCATCCCAC
AGCTCGAGAGCCTCAAAATATAATTTCCGCCTGCGTGAATGACACAGACG
TTGCGGAGAGTGTAGTCGTGTTCGGCGAAAAGTTGTTCAACAAGGCCAAT
TTCCACGTATCTTTTGACGAGGGTGTGACTGTAGATATGATGCAAAACTC
GCCCTTATTCTCCCGTGTGCAATGCGCCCCCTTTCTCGTATACGAATACA
AGGGATGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:885223..886230+

>Gvermi7000.t1 ID=Gvermi7000.t1|Name=Gvermi7000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24229:885223..886230+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTCAGCAAAGCTCCCGAGCAAAACAACATTTACATTCCGCCGTTA
CGTCGATGCCCATGACCGAGACCAAGTCAGAAACATCTGCGCCAGAGTTT
ACAATTCTCAAGATTATGTACCGCGTCTACTTCCTGCTTATGCCTCTAGC
GCTAACTGTAATCCCTTCGTTCTGGACAGCCCCTGTGGCATCACTGCCTT
CATCATCGTGCGCTACCAACAGTTTTCGCTAAAACCGCATCACCTTCCTG
AACGAGAAGTCTACATCGAAGCCGTGCGCGTGCGAGAAGACTTGCGCGGA
ATTGGCGTAGCAACAATCATTTTGTCAGAGGCATCAAAAATGATTCACAA
GTCGCGGGATCACTTGTCTACCGTTCGCATACTCTCGACCACCATCCCTC
AAAACAAGCCCATGATTCGAGTGTTCCACAAGTCCGGATGGAAACAAGTG
AGTAGCATGGTCATCTGGCCGAGGCAAGATGCTGTTCGCAGCTTTAAAAG
CACCGAAAAGTCAATGTTGCAATCTCTAAGCATTGCTCCCAGCATTTCAT
CCACCACCCTGGCATCGCAATGGCGACAGGTGCCTACTTCTACAGACATC
TCTGCCCTCATAACGCAGCTACGAAACAATGAGTCACGTTTTTTCCGACC
TGGCTATTTTGAAGTTGAAAGTCTTAGTTGCTCCTCCTTCTTCTTGGTGG
ATGAGCATGCGGAGCGTGAACAGCGATCAGTTTGGCGCCTCGATGTTGAT
GCCAAATTAGTTGGTTTGCTTTTCGTTAGGCCTCAAAATCTTCATCCCAC
AGCTCGAGAGCCTCAAAATATAATTTCCGCCTGCGTGAATGACACAGACG
TTGCGGAGAGTGTAGTCGTGTTCGGCGAAAAGTTGTTCAACAAGGCCAAT
TTCCACGTATCTTTTGACGAGGGTGTGACTGTAGATATGATGCAAAACTC
GCCCTTATTCTCCCGTGTGCAATGCGCCCCCTTTCTCGTATACGAATACA
AGGGATGA