Gvermi6999.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6999.t1
Unique NameGvermi6999.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length556
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:882404..884071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR346CT
PFAMsAlpha-amylase,Alpha-amylase_C,Glyco_transf_4,Glycos_transf_1
Max annot lvl2759|Eukaryota
KEGG koko:K03857
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
Evalue3.41e-199
EggNOG OGsCOG0438@1|root,KOG1111@2759|Eukaryota
EC2.4.1.198
Descriptionphosphatidylinositol N-acetylglucosaminyltransferase activity
COG categoryM
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6999Gvermi6999Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 882404..884071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6999.t1.stop1Gvermi6999.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 882404..882406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6999.t1.CDS1Gvermi6999.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 882404..884071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6999.t1.exon1Gvermi6999.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 882404..884071 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6999.t1.start1Gvermi6999.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 884069..884071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6999.t1Gvermi6999.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 882404..884071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6999.t1 ID=Gvermi6999.t1|Name=Gvermi6999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=556bp
MAPPPSSTAPAATPSASSSSAVAKPHAPRPSVPVSKAQPLTRAPLSAPPE
SDLQTDPPRAASSPHASPDALATALQHAQISEYQQKSPYAFDDVEDALPD
VENLPEQKKAHRRFKIALFAWESLHSIAVGGVAPHLTELAAGLERRGHEV
HAYVRTGAGQPSYERIDGVHVHRIAFELSPDFVQEVTNMCNAMVHFMLET
EAFMNVQFDICHAHDWLAAPALINIKRNHNRRCVFTVHSTEFGRCGNNMY
GGQSERIRNIEAEAIGLADMVIGVSGVLCDEIKAHYAFDWEKLRCVYNGI
NCLRYDGNLWDPAEVRAKYGVGPMDPMVLFVGRMATQKGPDILVEAIPSV
LASRPDAKFVLVGDGYMKDGLIARVHDLGVAGSVCFTGSMTGQNLVDLFK
ATDLVAIPSRNEPFGIVTLEAWASNKPVVVTKSGGPREFVWHDNDGYLVD
TSAEGIAWGICNAFNNFEHMRYMGERGRVKAAYQFSWDNIAENTNNVYDE
LLPEHPGHPDLKDEPPKVIAGAVDTKDDVKAVKSSAAATASKDAVQKVAK
YVSDV*
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spliced messenger RNA

>Gvermi6999.t1 ID=Gvermi6999.t1|Name=Gvermi6999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at ScGOVlb_24229:882404..884071- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCCGCCGTCCTCCACAGCCCCCGCGGCAACCCCCTCTGCTTC
GTCCTCCTCGGCCGTTGCCAAGCCGCACGCGCCCCGCCCATCCGTCCCGG
TCTCGAAAGCGCAACCGCTGACGCGCGCCCCGCTTTCAGCCCCCCCGGAG
AGCGATTTGCAAACTGACCCACCGCGTGCCGCATCCTCCCCGCACGCCTC
GCCAGACGCCCTCGCGACTGCCCTGCAGCACGCACAAATCTCCGAATACC
AGCAAAAGTCACCGTACGCCTTTGATGATGTGGAAGACGCCCTTCCGGAC
GTGGAAAATCTTCCGGAGCAGAAGAAGGCACACAGACGCTTCAAGATTGC
CCTGTTTGCCTGGGAGTCATTGCATTCCATCGCTGTGGGCGGCGTCGCAC
CACATCTCACCGAGCTGGCTGCCGGCTTGGAACGCCGTGGCCACGAGGTG
CACGCCTATGTCCGCACCGGAGCGGGACAGCCCTCGTACGAGCGAATTGA
CGGCGTCCATGTGCATCGCATAGCGTTTGAGCTTTCTCCGGATTTCGTGC
AGGAGGTTACCAACATGTGTAACGCCATGGTCCATTTCATGTTGGAGACC
GAGGCCTTTATGAACGTCCAATTCGATATTTGCCATGCCCATGACTGGCT
CGCGGCGCCGGCCCTCATTAATATCAAGAGAAATCACAACCGCCGGTGCG
TCTTCACCGTGCATTCCACCGAGTTTGGACGATGCGGCAATAACATGTAT
GGCGGACAATCTGAACGTATTCGTAACATTGAAGCGGAGGCTATTGGCCT
CGCCGACATGGTCATTGGCGTGTCCGGGGTGTTGTGTGACGAAATTAAAG
CTCATTACGCCTTTGACTGGGAGAAGCTTCGATGCGTTTACAACGGAATC
AACTGCTTGCGATACGATGGTAACCTGTGGGATCCCGCTGAGGTGCGTGC
TAAGTATGGCGTGGGACCCATGGATCCCATGGTTTTGTTTGTGGGCCGCA
TGGCCACACAAAAAGGCCCCGACATTCTTGTTGAAGCTATTCCGAGCGTT
CTTGCCTCTCGCCCTGACGCCAAGTTCGTGCTGGTTGGAGACGGTTACAT
GAAAGACGGTTTGATCGCGCGAGTGCATGACTTGGGCGTTGCTGGGTCTG
TGTGTTTCACTGGGAGCATGACGGGACAGAATCTCGTTGATCTTTTCAAG
GCCACAGACTTGGTCGCCATTCCCAGCCGCAACGAGCCGTTTGGAATTGT
TACATTGGAGGCCTGGGCCTCTAACAAGCCTGTGGTTGTGACGAAGAGTG
GCGGACCGAGGGAGTTTGTATGGCATGACAATGATGGGTATCTGGTAGAC
ACGAGTGCAGAAGGCATAGCGTGGGGCATTTGCAACGCGTTTAATAACTT
TGAGCACATGCGCTACATGGGAGAGAGGGGCCGCGTGAAAGCGGCTTACC
AATTCTCGTGGGATAACATCGCAGAGAACACCAACAACGTCTACGACGAG
CTGTTGCCTGAGCATCCGGGACATCCTGATCTAAAAGATGAGCCGCCCAA
GGTCATCGCAGGTGCTGTCGACACCAAGGACGACGTGAAGGCTGTCAAGA
GCTCTGCTGCTGCGACTGCATCGAAAGATGCCGTACAAAAGGTAGCCAAG
TACGTTTCGGACGTGTAG
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protein sequence of Gvermi6999.t1

>Gvermi6999.t1 ID=Gvermi6999.t1|Name=Gvermi6999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=556bp
MAPPPSSTAPAATPSASSSSAVAKPHAPRPSVPVSKAQPLTRAPLSAPPE
SDLQTDPPRAASSPHASPDALATALQHAQISEYQQKSPYAFDDVEDALPD
VENLPEQKKAHRRFKIALFAWESLHSIAVGGVAPHLTELAAGLERRGHEV
HAYVRTGAGQPSYERIDGVHVHRIAFELSPDFVQEVTNMCNAMVHFMLET
EAFMNVQFDICHAHDWLAAPALINIKRNHNRRCVFTVHSTEFGRCGNNMY
GGQSERIRNIEAEAIGLADMVIGVSGVLCDEIKAHYAFDWEKLRCVYNGI
NCLRYDGNLWDPAEVRAKYGVGPMDPMVLFVGRMATQKGPDILVEAIPSV
LASRPDAKFVLVGDGYMKDGLIARVHDLGVAGSVCFTGSMTGQNLVDLFK
ATDLVAIPSRNEPFGIVTLEAWASNKPVVVTKSGGPREFVWHDNDGYLVD
TSAEGIAWGICNAFNNFEHMRYMGERGRVKAAYQFSWDNIAENTNNVYDE
LLPEHPGHPDLKDEPPKVIAGAVDTKDDVKAVKSSAAATASKDAVQKVAK
YVSDV*
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mRNA from alignment at ScGOVlb_24229:882404..884071-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6999.t1 ID=Gvermi6999.t1|Name=Gvermi6999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at ScGOVlb_24229:882404..884071- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCGCCGCCGTCCTCCACAGCCCCCGCGGCAACCCCCTCTGCTTC
GTCCTCCTCGGCCGTTGCCAAGCCGCACGCGCCCCGCCCATCCGTCCCGG
TCTCGAAAGCGCAACCGCTGACGCGCGCCCCGCTTTCAGCCCCCCCGGAG
AGCGATTTGCAAACTGACCCACCGCGTGCCGCATCCTCCCCGCACGCCTC
GCCAGACGCCCTCGCGACTGCCCTGCAGCACGCACAAATCTCCGAATACC
AGCAAAAGTCACCGTACGCCTTTGATGATGTGGAAGACGCCCTTCCGGAC
GTGGAAAATCTTCCGGAGCAGAAGAAGGCACACAGACGCTTCAAGATTGC
CCTGTTTGCCTGGGAGTCATTGCATTCCATCGCTGTGGGCGGCGTCGCAC
CACATCTCACCGAGCTGGCTGCCGGCTTGGAACGCCGTGGCCACGAGGTG
CACGCCTATGTCCGCACCGGAGCGGGACAGCCCTCGTACGAGCGAATTGA
CGGCGTCCATGTGCATCGCATAGCGTTTGAGCTTTCTCCGGATTTCGTGC
AGGAGGTTACCAACATGTGTAACGCCATGGTCCATTTCATGTTGGAGACC
GAGGCCTTTATGAACGTCCAATTCGATATTTGCCATGCCCATGACTGGCT
CGCGGCGCCGGCCCTCATTAATATCAAGAGAAATCACAACCGCCGGTGCG
TCTTCACCGTGCATTCCACCGAGTTTGGACGATGCGGCAATAACATGTAT
GGCGGACAATCTGAACGTATTCGTAACATTGAAGCGGAGGCTATTGGCCT
CGCCGACATGGTCATTGGCGTGTCCGGGGTGTTGTGTGACGAAATTAAAG
CTCATTACGCCTTTGACTGGGAGAAGCTTCGATGCGTTTACAACGGAATC
AACTGCTTGCGATACGATGGTAACCTGTGGGATCCCGCTGAGGTGCGTGC
TAAGTATGGCGTGGGACCCATGGATCCCATGGTTTTGTTTGTGGGCCGCA
TGGCCACACAAAAAGGCCCCGACATTCTTGTTGAAGCTATTCCGAGCGTT
CTTGCCTCTCGCCCTGACGCCAAGTTCGTGCTGGTTGGAGACGGTTACAT
GAAAGACGGTTTGATCGCGCGAGTGCATGACTTGGGCGTTGCTGGGTCTG
TGTGTTTCACTGGGAGCATGACGGGACAGAATCTCGTTGATCTTTTCAAG
GCCACAGACTTGGTCGCCATTCCCAGCCGCAACGAGCCGTTTGGAATTGT
TACATTGGAGGCCTGGGCCTCTAACAAGCCTGTGGTTGTGACGAAGAGTG
GCGGACCGAGGGAGTTTGTATGGCATGACAATGATGGGTATCTGGTAGAC
ACGAGTGCAGAAGGCATAGCGTGGGGCATTTGCAACGCGTTTAATAACTT
TGAGCACATGCGCTACATGGGAGAGAGGGGCCGCGTGAAAGCGGCTTACC
AATTCTCGTGGGATAACATCGCAGAGAACACCAACAACGTCTACGACGAG
CTGTTGCCTGAGCATCCGGGACATCCTGATCTAAAAGATGAGCCGCCCAA
GGTCATCGCAGGTGCTGTCGACACCAAGGACGACGTGAAGGCTGTCAAGA
GCTCTGCTGCTGCGACTGCATCGAAAGATGCCGTACAAAAGGTAGCCAAG
TACGTTTCGGACGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:882404..884071-

>Gvermi6999.t1 ID=Gvermi6999.t1|Name=Gvermi6999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1668bp|location=Sequence derived from alignment at ScGOVlb_24229:882404..884071- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCGCCGCCGTCCTCCACAGCCCCCGCGGCAACCCCCTCTGCTTC
GTCCTCCTCGGCCGTTGCCAAGCCGCACGCGCCCCGCCCATCCGTCCCGG
TCTCGAAAGCGCAACCGCTGACGCGCGCCCCGCTTTCAGCCCCCCCGGAG
AGCGATTTGCAAACTGACCCACCGCGTGCCGCATCCTCCCCGCACGCCTC
GCCAGACGCCCTCGCGACTGCCCTGCAGCACGCACAAATCTCCGAATACC
AGCAAAAGTCACCGTACGCCTTTGATGATGTGGAAGACGCCCTTCCGGAC
GTGGAAAATCTTCCGGAGCAGAAGAAGGCACACAGACGCTTCAAGATTGC
CCTGTTTGCCTGGGAGTCATTGCATTCCATCGCTGTGGGCGGCGTCGCAC
CACATCTCACCGAGCTGGCTGCCGGCTTGGAACGCCGTGGCCACGAGGTG
CACGCCTATGTCCGCACCGGAGCGGGACAGCCCTCGTACGAGCGAATTGA
CGGCGTCCATGTGCATCGCATAGCGTTTGAGCTTTCTCCGGATTTCGTGC
AGGAGGTTACCAACATGTGTAACGCCATGGTCCATTTCATGTTGGAGACC
GAGGCCTTTATGAACGTCCAATTCGATATTTGCCATGCCCATGACTGGCT
CGCGGCGCCGGCCCTCATTAATATCAAGAGAAATCACAACCGCCGGTGCG
TCTTCACCGTGCATTCCACCGAGTTTGGACGATGCGGCAATAACATGTAT
GGCGGACAATCTGAACGTATTCGTAACATTGAAGCGGAGGCTATTGGCCT
CGCCGACATGGTCATTGGCGTGTCCGGGGTGTTGTGTGACGAAATTAAAG
CTCATTACGCCTTTGACTGGGAGAAGCTTCGATGCGTTTACAACGGAATC
AACTGCTTGCGATACGATGGTAACCTGTGGGATCCCGCTGAGGTGCGTGC
TAAGTATGGCGTGGGACCCATGGATCCCATGGTTTTGTTTGTGGGCCGCA
TGGCCACACAAAAAGGCCCCGACATTCTTGTTGAAGCTATTCCGAGCGTT
CTTGCCTCTCGCCCTGACGCCAAGTTCGTGCTGGTTGGAGACGGTTACAT
GAAAGACGGTTTGATCGCGCGAGTGCATGACTTGGGCGTTGCTGGGTCTG
TGTGTTTCACTGGGAGCATGACGGGACAGAATCTCGTTGATCTTTTCAAG
GCCACAGACTTGGTCGCCATTCCCAGCCGCAACGAGCCGTTTGGAATTGT
TACATTGGAGGCCTGGGCCTCTAACAAGCCTGTGGTTGTGACGAAGAGTG
GCGGACCGAGGGAGTTTGTATGGCATGACAATGATGGGTATCTGGTAGAC
ACGAGTGCAGAAGGCATAGCGTGGGGCATTTGCAACGCGTTTAATAACTT
TGAGCACATGCGCTACATGGGAGAGAGGGGCCGCGTGAAAGCGGCTTACC
AATTCTCGTGGGATAACATCGCAGAGAACACCAACAACGTCTACGACGAG
CTGTTGCCTGAGCATCCGGGACATCCTGATCTAAAAGATGAGCCGCCCAA
GGTCATCGCAGGTGCTGTCGACACCAAGGACGACGTGAAGGCTGTCAAGA
GCTCTGCTGCTGCGACTGCATCGAAAGATGCCGTACAAAAGGTAGCCAAG
TACGTTTCGGACGTGTAG
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