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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 5786.XP_003291281.1 |
| PFAMs | Myb_DNA-binding |
| Max annot lvl | 554915|Amoebozoa |
| GOs | GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363 |
| Evalue | 3.12e-11 |
| EggNOG OGs | 2CVT5@1|root,2RSSQ@2759|Eukaryota,3XG7P@554915|Amoebozoa |
| Description | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains |
| COG category | K |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp MADRKAEPNCTSAPDTSNPTPEKETEDKPQCQQTSGDSSQNATSQVRISV LKAIANHQKKRISELERTLEKKRATIQRLSATPPHHHPPLPMVPPAALPA MPTIPTSAPITPAPTSSPHMNASPASGAVTSSSQPASQTTPAVSQPQPSP STSASNHVMPTPMLGFPPQPHVSPYPYMFPPPDPAFAAQYMGVMPPAVLH PLQASHAPISSQTNQHDKGNEGQEQKQSRYWTPDEHERFLAGMKACGPKN YLQISEYVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRLSNEDPTN SIAADAAAAVKAAAAAAMRGKVPGTCSVVFKDSDSTGTPAGPSSSSSGKQ CHSSHHNSHGASSGDGSIGANRIGEQHTETSGTDNHSAAVAAIAAEAKAL GHGVLPLEAIEIPPMSFRNTQPKMVDKDTGRLEDDKSPKGSITGRTTEPM APRNSSEPSNIIALKGCSVAAPSQSNKGCAETTETSHKEAEDASAIGNIL QDCASKDEAAASLQGDHGGSCTGRAASTSEMLASSAAESKMKTDQGNAST SGCLDGAKDRGREPLQSRSTRCTEAGNKQNEADRKSAGSVVHTKLTKTTV GHEEVTNKKGSGTHDGMNAVKFEPESVDSCANLTAEKNVRGSSAGQNEET AGDGIVKQECDMAVEADKKSQRQHRHDSESDRAKNGVNSDGTKPKSEDVG ERSHSADEGCNDGEVRQERAIGDGRGTTGDADDAEKAGAAESRKRMREAD EKEANKRARTDDEAEGEAAAGGSRNDTTVRQMRSNRGNITAGAKQNIARG AAKRAR* back to topspliced messenger RNA >Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at ScGOVlb_24229:878494..880914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCGACCGCAAGGCAGAACCGAATTGCACCTCTGCTCCAGATACCTC GAACCCAACTCCTGAGAAAGAGACCGAAGACAAACCGCAATGTCAACAAA CCTCGGGTGATTCCTCGCAAAATGCTACATCACAAGTGCGCATTTCCGTG TTGAAAGCCATAGCGAACCATCAGAAGAAAAGAATATCCGAATTGGAGCG CACCTTGGAAAAGAAAAGGGCGACCATACAGCGTCTTTCAGCCACACCCC CACACCATCATCCGCCTCTTCCGATGGTTCCACCCGCTGCATTACCCGCG ATGCCCACAATCCCGACAAGTGCTCCAATTACTCCAGCCCCAACAAGCTC CCCGCATATGAACGCGTCGCCAGCCTCAGGGGCCGTTACATCAAGCTCAC AGCCAGCATCTCAAACAACCCCAGCTGTCTCTCAACCACAGCCCTCGCCA TCGACAAGCGCGAGCAATCACGTTATGCCCACGCCTATGCTCGGGTTTCC TCCACAACCGCATGTTTCTCCGTACCCGTACATGTTTCCTCCTCCAGATC CGGCGTTTGCAGCCCAGTATATGGGAGTTATGCCTCCTGCCGTCCTCCAC CCTCTTCAAGCTTCGCATGCGCCAATTTCGAGCCAAACCAATCAACATGA CAAGGGAAACGAGGGGCAGGAACAAAAGCAAAGCAGATATTGGACTCCAG ATGAACATGAACGATTTCTTGCAGGCATGAAAGCATGCGGGCCGAAAAAC TATTTGCAGATATCCGAGTATGTCGGAACCCGAAATGCCAAACAAGTTCG CACGCACGCACAGAAATACCAAAAAAGACTGGAACGCGAGGATGCCAAGC GACGAAGTGATATGCGCCACGGAAGGTTAAGCAACGAGGATCCCACAAAC TCCATTGCAGCAGATGCAGCAGCAGCAGTTAAGGCTGCTGCTGCTGCGGC GATGCGCGGTAAAGTTCCGGGTACTTGCTCTGTGGTTTTCAAAGATTCGG ACTCAACAGGAACGCCTGCAGGGCCTAGCAGTTCTTCGAGTGGGAAACAG TGCCATTCGTCACATCATAATTCTCATGGTGCAAGCAGTGGTGATGGAAG TATAGGCGCCAATAGGATTGGAGAGCAGCATACAGAAACCAGCGGCACCG ACAATCACTCAGCAGCTGTTGCTGCCATAGCAGCAGAGGCCAAGGCACTT GGACATGGGGTGTTGCCCCTGGAAGCTATCGAAATTCCGCCTATGTCTTT TAGGAACACACAACCGAAGATGGTGGACAAGGATACCGGAAGACTGGAAG ACGACAAATCACCGAAAGGAAGCATAACAGGGCGGACCACAGAGCCAATG GCTCCACGAAACAGCTCAGAACCTTCGAACATAATTGCTTTAAAGGGATG TAGTGTGGCAGCACCATCACAAAGCAACAAAGGGTGTGCAGAAACCACAG AGACCTCCCACAAAGAAGCAGAAGATGCTTCAGCAATAGGCAACATTTTG CAGGACTGTGCATCAAAGGATGAAGCCGCAGCAAGTCTCCAAGGCGATCA TGGTGGAAGCTGCACTGGAAGAGCAGCAAGCACATCCGAGATGTTGGCCA GTAGTGCAGCGGAGAGCAAGATGAAGACTGACCAAGGCAATGCAAGCACC AGCGGATGTCTCGACGGTGCGAAGGATAGGGGACGAGAGCCGCTTCAATC ACGAAGTACGCGATGTACAGAAGCAGGAAACAAACAGAACGAGGCTGATA GGAAATCAGCTGGCTCTGTTGTACATACGAAACTAACCAAAACAACTGTA GGACATGAGGAAGTCACGAACAAGAAAGGCTCCGGAACGCATGATGGAAT GAATGCTGTGAAGTTTGAGCCAGAAAGTGTTGATAGTTGCGCTAACTTAA CAGCGGAGAAGAACGTGCGAGGTTCAAGTGCAGGTCAAAATGAGGAAACA GCCGGAGATGGCATAGTGAAACAAGAATGTGACATGGCGGTCGAAGCAGA TAAGAAATCACAGAGGCAGCATCGACACGATTCTGAGAGCGACCGAGCGA AGAACGGAGTCAATTCAGATGGAACGAAACCAAAATCAGAAGACGTCGGA GAACGAAGTCACAGCGCTGATGAAGGGTGCAACGATGGGGAAGTGCGACA AGAGAGGGCCATTGGAGACGGAAGAGGGACGACGGGGGACGCGGACGACG CCGAAAAGGCCGGCGCGGCAGAAAGCAGGAAGCGCATGCGCGAAGCTGAC GAGAAGGAGGCGAACAAAAGGGCGAGGACGGACGACGAGGCTGAGGGGGA AGCGGCCGCGGGGGGCAGCCGGAACGACACGACGGTGCGTCAAATGCGCT CAAACCGCGGAAACATCACGGCGGGCGCAAAACAAAACATAGCGCGCGGC GCTGCGAAGCGGGCGCGATAA back to topprotein sequence of Gvermi6998.t1 >Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=807bp
MADRKAEPNCTSAPDTSNPTPEKETEDKPQCQQTSGDSSQNATSQVRISV LKAIANHQKKRISELERTLEKKRATIQRLSATPPHHHPPLPMVPPAALPA MPTIPTSAPITPAPTSSPHMNASPASGAVTSSSQPASQTTPAVSQPQPSP STSASNHVMPTPMLGFPPQPHVSPYPYMFPPPDPAFAAQYMGVMPPAVLH PLQASHAPISSQTNQHDKGNEGQEQKQSRYWTPDEHERFLAGMKACGPKN YLQISEYVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRLSNEDPTN SIAADAAAAVKAAAAAAMRGKVPGTCSVVFKDSDSTGTPAGPSSSSSGKQ CHSSHHNSHGASSGDGSIGANRIGEQHTETSGTDNHSAAVAAIAAEAKAL GHGVLPLEAIEIPPMSFRNTQPKMVDKDTGRLEDDKSPKGSITGRTTEPM APRNSSEPSNIIALKGCSVAAPSQSNKGCAETTETSHKEAEDASAIGNIL QDCASKDEAAASLQGDHGGSCTGRAASTSEMLASSAAESKMKTDQGNAST SGCLDGAKDRGREPLQSRSTRCTEAGNKQNEADRKSAGSVVHTKLTKTTV GHEEVTNKKGSGTHDGMNAVKFEPESVDSCANLTAEKNVRGSSAGQNEET AGDGIVKQECDMAVEADKKSQRQHRHDSESDRAKNGVNSDGTKPKSEDVG ERSHSADEGCNDGEVRQERAIGDGRGTTGDADDAEKAGAAESRKRMREAD EKEANKRARTDDEAEGEAAAGGSRNDTTVRQMRSNRGNITAGAKQNIARG AAKRAR* back to topmRNA from alignment at ScGOVlb_24229:878494..880914- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at ScGOVlb_24229:878494..880914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCGACCGCAAGGCAGAACCGAATTGCACCTCTGCTCCAGATACCTC
GAACCCAACTCCTGAGAAAGAGACCGAAGACAAACCGCAATGTCAACAAA
CCTCGGGTGATTCCTCGCAAAATGCTACATCACAAGTGCGCATTTCCGTG
TTGAAAGCCATAGCGAACCATCAGAAGAAAAGAATATCCGAATTGGAGCG
CACCTTGGAAAAGAAAAGGGCGACCATACAGCGTCTTTCAGCCACACCCC
CACACCATCATCCGCCTCTTCCGATGGTTCCACCCGCTGCATTACCCGCG
ATGCCCACAATCCCGACAAGTGCTCCAATTACTCCAGCCCCAACAAGCTC
CCCGCATATGAACGCGTCGCCAGCCTCAGGGGCCGTTACATCAAGCTCAC
AGCCAGCATCTCAAACAACCCCAGCTGTCTCTCAACCACAGCCCTCGCCA
TCGACAAGCGCGAGCAATCACGTTATGCCCACGCCTATGCTCGGGTTTCC
TCCACAACCGCATGTTTCTCCGTACCCGTACATGTTTCCTCCTCCAGATC
CGGCGTTTGCAGCCCAGTATATGGGAGTTATGCCTCCTGCCGTCCTCCAC
CCTCTTCAAGCTTCGCATGCGCCAATTTCGAGCCAAACCAATCAACATGA
CAAGGGAAACGAGGGGCAGGAACAAAAGCAAAGCAGATATTGGACTCCAG
ATGAACATGAACGATTTCTTGCAGGCATGAAAGCATGCGGGCCGAAAAAC
TATTTGCAGATATCCGAGTATGTCGGAACCCGAAATGCCAAACAAGTTCG
CACGCACGCACAGAAATACCAAAAAAGACTGGAACGCGAGGATGCCAAGC
GACGAAGTGATATGCGCCACGGAAGGTTAAGCAACGAGGATCCCACAAAC
TCCATTGCAGCAGATGCAGCAGCAGCAGTTAAGGCTGCTGCTGCTGCGGC
GATGCGCGGTAAAGTTCCGGGTACTTGCTCTGTGGTTTTCAAAGATTCGG
ACTCAACAGGAACGCCTGCAGGGCCTAGCAGTTCTTCGAGTGGGAAACAG
TGCCATTCGTCACATCATAATTCTCATGGTGCAAGCAGTGGTGATGGAAG
TATAGGCGCCAATAGGATTGGAGAGCAGCATACAGAAACCAGCGGCACCG
ACAATCACTCAGCAGCTGTTGCTGCCATAGCAGCAGAGGCCAAGGCACTT
GGACATGGGGTGTTGCCCCTGGAAGCTATCGAAATTCCGCCTATGTCTTT
TAGGAACACACAACCGAAGATGGTGGACAAGGATACCGGAAGACTGGAAG
ACGACAAATCACCGAAAGGAAGCATAACAGGGCGGACCACAGAGCCAATG
GCTCCACGAAACAGCTCAGAACCTTCGAACATAATTGCTTTAAAGGGATG
TAGTGTGGCAGCACCATCACAAAGCAACAAAGGGTGTGCAGAAACCACAG
AGACCTCCCACAAAGAAGCAGAAGATGCTTCAGCAATAGGCAACATTTTG
CAGGACTGTGCATCAAAGGATGAAGCCGCAGCAAGTCTCCAAGGCGATCA
TGGTGGAAGCTGCACTGGAAGAGCAGCAAGCACATCCGAGATGTTGGCCA
GTAGTGCAGCGGAGAGCAAGATGAAGACTGACCAAGGCAATGCAAGCACC
AGCGGATGTCTCGACGGTGCGAAGGATAGGGGACGAGAGCCGCTTCAATC
ACGAAGTACGCGATGTACAGAAGCAGGAAACAAACAGAACGAGGCTGATA
GGAAATCAGCTGGCTCTGTTGTACATACGAAACTAACCAAAACAACTGTA
GGACATGAGGAAGTCACGAACAAGAAAGGCTCCGGAACGCATGATGGAAT
GAATGCTGTGAAGTTTGAGCCAGAAAGTGTTGATAGTTGCGCTAACTTAA
CAGCGGAGAAGAACGTGCGAGGTTCAAGTGCAGGTCAAAATGAGGAAACA
GCCGGAGATGGCATAGTGAAACAAGAATGTGACATGGCGGTCGAAGCAGA
TAAGAAATCACAGAGGCAGCATCGACACGATTCTGAGAGCGACCGAGCGA
AGAACGGAGTCAATTCAGATGGAACGAAACCAAAATCAGAAGACGTCGGA
GAACGAAGTCACAGCGCTGATGAAGGGTGCAACGATGGGGAAGTGCGACA
AGAGAGGGCCATTGGAGACGGAAGAGGGACGACGGGGGACGCGGACGACG
CCGAAAAGGCCGGCGCGGCAGAAAGCAGGAAGCGCATGCGCGAAGCTGAC
GAGAAGGAGGCGAACAAAAGGGCGAGGACGGACGACGAGGCTGAGGGGGA
AGCGGCCGCGGGGGGCAGCCGGAACGACACGACGGTGCGTCAAATGCGCT
CAAACCGCGGAAACATCACGGCGGGCGCAAAACAAAACATAGCGCGCGGC
GCTGCGAAGCGGGCGCGATAA back to topCoding sequence (CDS) from alignment at ScGOVlb_24229:878494..880914- >Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2421bp|location=Sequence derived from alignment at ScGOVlb_24229:878494..880914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCCGACCGCAAGGCAGAACCGAATTGCACCTCTGCTCCAGATACCTC GAACCCAACTCCTGAGAAAGAGACCGAAGACAAACCGCAATGTCAACAAA CCTCGGGTGATTCCTCGCAAAATGCTACATCACAAGTGCGCATTTCCGTG TTGAAAGCCATAGCGAACCATCAGAAGAAAAGAATATCCGAATTGGAGCG CACCTTGGAAAAGAAAAGGGCGACCATACAGCGTCTTTCAGCCACACCCC CACACCATCATCCGCCTCTTCCGATGGTTCCACCCGCTGCATTACCCGCG ATGCCCACAATCCCGACAAGTGCTCCAATTACTCCAGCCCCAACAAGCTC CCCGCATATGAACGCGTCGCCAGCCTCAGGGGCCGTTACATCAAGCTCAC AGCCAGCATCTCAAACAACCCCAGCTGTCTCTCAACCACAGCCCTCGCCA TCGACAAGCGCGAGCAATCACGTTATGCCCACGCCTATGCTCGGGTTTCC TCCACAACCGCATGTTTCTCCGTACCCGTACATGTTTCCTCCTCCAGATC CGGCGTTTGCAGCCCAGTATATGGGAGTTATGCCTCCTGCCGTCCTCCAC CCTCTTCAAGCTTCGCATGCGCCAATTTCGAGCCAAACCAATCAACATGA CAAGGGAAACGAGGGGCAGGAACAAAAGCAAAGCAGATATTGGACTCCAG ATGAACATGAACGATTTCTTGCAGGCATGAAAGCATGCGGGCCGAAAAAC TATTTGCAGATATCCGAGTATGTCGGAACCCGAAATGCCAAACAAGTTCG CACGCACGCACAGAAATACCAAAAAAGACTGGAACGCGAGGATGCCAAGC GACGAAGTGATATGCGCCACGGAAGGTTAAGCAACGAGGATCCCACAAAC TCCATTGCAGCAGATGCAGCAGCAGCAGTTAAGGCTGCTGCTGCTGCGGC GATGCGCGGTAAAGTTCCGGGTACTTGCTCTGTGGTTTTCAAAGATTCGG ACTCAACAGGAACGCCTGCAGGGCCTAGCAGTTCTTCGAGTGGGAAACAG TGCCATTCGTCACATCATAATTCTCATGGTGCAAGCAGTGGTGATGGAAG TATAGGCGCCAATAGGATTGGAGAGCAGCATACAGAAACCAGCGGCACCG ACAATCACTCAGCAGCTGTTGCTGCCATAGCAGCAGAGGCCAAGGCACTT GGACATGGGGTGTTGCCCCTGGAAGCTATCGAAATTCCGCCTATGTCTTT TAGGAACACACAACCGAAGATGGTGGACAAGGATACCGGAAGACTGGAAG ACGACAAATCACCGAAAGGAAGCATAACAGGGCGGACCACAGAGCCAATG GCTCCACGAAACAGCTCAGAACCTTCGAACATAATTGCTTTAAAGGGATG TAGTGTGGCAGCACCATCACAAAGCAACAAAGGGTGTGCAGAAACCACAG AGACCTCCCACAAAGAAGCAGAAGATGCTTCAGCAATAGGCAACATTTTG CAGGACTGTGCATCAAAGGATGAAGCCGCAGCAAGTCTCCAAGGCGATCA TGGTGGAAGCTGCACTGGAAGAGCAGCAAGCACATCCGAGATGTTGGCCA GTAGTGCAGCGGAGAGCAAGATGAAGACTGACCAAGGCAATGCAAGCACC AGCGGATGTCTCGACGGTGCGAAGGATAGGGGACGAGAGCCGCTTCAATC ACGAAGTACGCGATGTACAGAAGCAGGAAACAAACAGAACGAGGCTGATA GGAAATCAGCTGGCTCTGTTGTACATACGAAACTAACCAAAACAACTGTA GGACATGAGGAAGTCACGAACAAGAAAGGCTCCGGAACGCATGATGGAAT GAATGCTGTGAAGTTTGAGCCAGAAAGTGTTGATAGTTGCGCTAACTTAA CAGCGGAGAAGAACGTGCGAGGTTCAAGTGCAGGTCAAAATGAGGAAACA GCCGGAGATGGCATAGTGAAACAAGAATGTGACATGGCGGTCGAAGCAGA TAAGAAATCACAGAGGCAGCATCGACACGATTCTGAGAGCGACCGAGCGA AGAACGGAGTCAATTCAGATGGAACGAAACCAAAATCAGAAGACGTCGGA GAACGAAGTCACAGCGCTGATGAAGGGTGCAACGATGGGGAAGTGCGACA AGAGAGGGCCATTGGAGACGGAAGAGGGACGACGGGGGACGCGGACGACG CCGAAAAGGCCGGCGCGGCAGAAAGCAGGAAGCGCATGCGCGAAGCTGAC GAGAAGGAGGCGAACAAAAGGGCGAGGACGGACGACGAGGCTGAGGGGGA AGCGGCCGCGGGGGGCAGCCGGAACGACACGACGGTGCGTCAAATGCGCT CAAACCGCGGAAACATCACGGCGGGCGCAAAACAAAACATAGCGCGCGGC GCTGCGAAGCGGGCGCGATAA back to top
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