Gvermi6998.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6998.t1
Unique NameGvermi6998.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length807
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:878494..880914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003291281.1
PFAMsMyb_DNA-binding
Max annot lvl554915|Amoebozoa
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0097159,GO:1901363
Evalue3.12e-11
EggNOG OGs2CVT5@1|root,2RSSQ@2759|Eukaryota,3XG7P@554915|Amoebozoa
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6998Gvermi6998Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 878494..880914 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6998.t1.stop1Gvermi6998.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 878494..878496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6998.t1.CDS1Gvermi6998.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 878494..880914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6998.t1.exon1Gvermi6998.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 878494..880914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6998.t1.start1Gvermi6998.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 880912..880914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6998.t1Gvermi6998.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 878494..880914 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp
MADRKAEPNCTSAPDTSNPTPEKETEDKPQCQQTSGDSSQNATSQVRISV
LKAIANHQKKRISELERTLEKKRATIQRLSATPPHHHPPLPMVPPAALPA
MPTIPTSAPITPAPTSSPHMNASPASGAVTSSSQPASQTTPAVSQPQPSP
STSASNHVMPTPMLGFPPQPHVSPYPYMFPPPDPAFAAQYMGVMPPAVLH
PLQASHAPISSQTNQHDKGNEGQEQKQSRYWTPDEHERFLAGMKACGPKN
YLQISEYVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRLSNEDPTN
SIAADAAAAVKAAAAAAMRGKVPGTCSVVFKDSDSTGTPAGPSSSSSGKQ
CHSSHHNSHGASSGDGSIGANRIGEQHTETSGTDNHSAAVAAIAAEAKAL
GHGVLPLEAIEIPPMSFRNTQPKMVDKDTGRLEDDKSPKGSITGRTTEPM
APRNSSEPSNIIALKGCSVAAPSQSNKGCAETTETSHKEAEDASAIGNIL
QDCASKDEAAASLQGDHGGSCTGRAASTSEMLASSAAESKMKTDQGNAST
SGCLDGAKDRGREPLQSRSTRCTEAGNKQNEADRKSAGSVVHTKLTKTTV
GHEEVTNKKGSGTHDGMNAVKFEPESVDSCANLTAEKNVRGSSAGQNEET
AGDGIVKQECDMAVEADKKSQRQHRHDSESDRAKNGVNSDGTKPKSEDVG
ERSHSADEGCNDGEVRQERAIGDGRGTTGDADDAEKAGAAESRKRMREAD
EKEANKRARTDDEAEGEAAAGGSRNDTTVRQMRSNRGNITAGAKQNIARG
AAKRAR*
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spliced messenger RNA

>Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at ScGOVlb_24229:878494..880914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACCGCAAGGCAGAACCGAATTGCACCTCTGCTCCAGATACCTC
GAACCCAACTCCTGAGAAAGAGACCGAAGACAAACCGCAATGTCAACAAA
CCTCGGGTGATTCCTCGCAAAATGCTACATCACAAGTGCGCATTTCCGTG
TTGAAAGCCATAGCGAACCATCAGAAGAAAAGAATATCCGAATTGGAGCG
CACCTTGGAAAAGAAAAGGGCGACCATACAGCGTCTTTCAGCCACACCCC
CACACCATCATCCGCCTCTTCCGATGGTTCCACCCGCTGCATTACCCGCG
ATGCCCACAATCCCGACAAGTGCTCCAATTACTCCAGCCCCAACAAGCTC
CCCGCATATGAACGCGTCGCCAGCCTCAGGGGCCGTTACATCAAGCTCAC
AGCCAGCATCTCAAACAACCCCAGCTGTCTCTCAACCACAGCCCTCGCCA
TCGACAAGCGCGAGCAATCACGTTATGCCCACGCCTATGCTCGGGTTTCC
TCCACAACCGCATGTTTCTCCGTACCCGTACATGTTTCCTCCTCCAGATC
CGGCGTTTGCAGCCCAGTATATGGGAGTTATGCCTCCTGCCGTCCTCCAC
CCTCTTCAAGCTTCGCATGCGCCAATTTCGAGCCAAACCAATCAACATGA
CAAGGGAAACGAGGGGCAGGAACAAAAGCAAAGCAGATATTGGACTCCAG
ATGAACATGAACGATTTCTTGCAGGCATGAAAGCATGCGGGCCGAAAAAC
TATTTGCAGATATCCGAGTATGTCGGAACCCGAAATGCCAAACAAGTTCG
CACGCACGCACAGAAATACCAAAAAAGACTGGAACGCGAGGATGCCAAGC
GACGAAGTGATATGCGCCACGGAAGGTTAAGCAACGAGGATCCCACAAAC
TCCATTGCAGCAGATGCAGCAGCAGCAGTTAAGGCTGCTGCTGCTGCGGC
GATGCGCGGTAAAGTTCCGGGTACTTGCTCTGTGGTTTTCAAAGATTCGG
ACTCAACAGGAACGCCTGCAGGGCCTAGCAGTTCTTCGAGTGGGAAACAG
TGCCATTCGTCACATCATAATTCTCATGGTGCAAGCAGTGGTGATGGAAG
TATAGGCGCCAATAGGATTGGAGAGCAGCATACAGAAACCAGCGGCACCG
ACAATCACTCAGCAGCTGTTGCTGCCATAGCAGCAGAGGCCAAGGCACTT
GGACATGGGGTGTTGCCCCTGGAAGCTATCGAAATTCCGCCTATGTCTTT
TAGGAACACACAACCGAAGATGGTGGACAAGGATACCGGAAGACTGGAAG
ACGACAAATCACCGAAAGGAAGCATAACAGGGCGGACCACAGAGCCAATG
GCTCCACGAAACAGCTCAGAACCTTCGAACATAATTGCTTTAAAGGGATG
TAGTGTGGCAGCACCATCACAAAGCAACAAAGGGTGTGCAGAAACCACAG
AGACCTCCCACAAAGAAGCAGAAGATGCTTCAGCAATAGGCAACATTTTG
CAGGACTGTGCATCAAAGGATGAAGCCGCAGCAAGTCTCCAAGGCGATCA
TGGTGGAAGCTGCACTGGAAGAGCAGCAAGCACATCCGAGATGTTGGCCA
GTAGTGCAGCGGAGAGCAAGATGAAGACTGACCAAGGCAATGCAAGCACC
AGCGGATGTCTCGACGGTGCGAAGGATAGGGGACGAGAGCCGCTTCAATC
ACGAAGTACGCGATGTACAGAAGCAGGAAACAAACAGAACGAGGCTGATA
GGAAATCAGCTGGCTCTGTTGTACATACGAAACTAACCAAAACAACTGTA
GGACATGAGGAAGTCACGAACAAGAAAGGCTCCGGAACGCATGATGGAAT
GAATGCTGTGAAGTTTGAGCCAGAAAGTGTTGATAGTTGCGCTAACTTAA
CAGCGGAGAAGAACGTGCGAGGTTCAAGTGCAGGTCAAAATGAGGAAACA
GCCGGAGATGGCATAGTGAAACAAGAATGTGACATGGCGGTCGAAGCAGA
TAAGAAATCACAGAGGCAGCATCGACACGATTCTGAGAGCGACCGAGCGA
AGAACGGAGTCAATTCAGATGGAACGAAACCAAAATCAGAAGACGTCGGA
GAACGAAGTCACAGCGCTGATGAAGGGTGCAACGATGGGGAAGTGCGACA
AGAGAGGGCCATTGGAGACGGAAGAGGGACGACGGGGGACGCGGACGACG
CCGAAAAGGCCGGCGCGGCAGAAAGCAGGAAGCGCATGCGCGAAGCTGAC
GAGAAGGAGGCGAACAAAAGGGCGAGGACGGACGACGAGGCTGAGGGGGA
AGCGGCCGCGGGGGGCAGCCGGAACGACACGACGGTGCGTCAAATGCGCT
CAAACCGCGGAAACATCACGGCGGGCGCAAAACAAAACATAGCGCGCGGC
GCTGCGAAGCGGGCGCGATAA
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protein sequence of Gvermi6998.t1

>Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=807bp
MADRKAEPNCTSAPDTSNPTPEKETEDKPQCQQTSGDSSQNATSQVRISV
LKAIANHQKKRISELERTLEKKRATIQRLSATPPHHHPPLPMVPPAALPA
MPTIPTSAPITPAPTSSPHMNASPASGAVTSSSQPASQTTPAVSQPQPSP
STSASNHVMPTPMLGFPPQPHVSPYPYMFPPPDPAFAAQYMGVMPPAVLH
PLQASHAPISSQTNQHDKGNEGQEQKQSRYWTPDEHERFLAGMKACGPKN
YLQISEYVGTRNAKQVRTHAQKYQKRLEREDAKRRSDMRHGRLSNEDPTN
SIAADAAAAVKAAAAAAMRGKVPGTCSVVFKDSDSTGTPAGPSSSSSGKQ
CHSSHHNSHGASSGDGSIGANRIGEQHTETSGTDNHSAAVAAIAAEAKAL
GHGVLPLEAIEIPPMSFRNTQPKMVDKDTGRLEDDKSPKGSITGRTTEPM
APRNSSEPSNIIALKGCSVAAPSQSNKGCAETTETSHKEAEDASAIGNIL
QDCASKDEAAASLQGDHGGSCTGRAASTSEMLASSAAESKMKTDQGNAST
SGCLDGAKDRGREPLQSRSTRCTEAGNKQNEADRKSAGSVVHTKLTKTTV
GHEEVTNKKGSGTHDGMNAVKFEPESVDSCANLTAEKNVRGSSAGQNEET
AGDGIVKQECDMAVEADKKSQRQHRHDSESDRAKNGVNSDGTKPKSEDVG
ERSHSADEGCNDGEVRQERAIGDGRGTTGDADDAEKAGAAESRKRMREAD
EKEANKRARTDDEAEGEAAAGGSRNDTTVRQMRSNRGNITAGAKQNIARG
AAKRAR*
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mRNA from alignment at ScGOVlb_24229:878494..880914-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2421bp|location=Sequence derived from alignment at ScGOVlb_24229:878494..880914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACCGCAAGGCAGAACCGAATTGCACCTCTGCTCCAGATACCTC GAACCCAACTCCTGAGAAAGAGACCGAAGACAAACCGCAATGTCAACAAA CCTCGGGTGATTCCTCGCAAAATGCTACATCACAAGTGCGCATTTCCGTG TTGAAAGCCATAGCGAACCATCAGAAGAAAAGAATATCCGAATTGGAGCG CACCTTGGAAAAGAAAAGGGCGACCATACAGCGTCTTTCAGCCACACCCC CACACCATCATCCGCCTCTTCCGATGGTTCCACCCGCTGCATTACCCGCG ATGCCCACAATCCCGACAAGTGCTCCAATTACTCCAGCCCCAACAAGCTC CCCGCATATGAACGCGTCGCCAGCCTCAGGGGCCGTTACATCAAGCTCAC AGCCAGCATCTCAAACAACCCCAGCTGTCTCTCAACCACAGCCCTCGCCA TCGACAAGCGCGAGCAATCACGTTATGCCCACGCCTATGCTCGGGTTTCC TCCACAACCGCATGTTTCTCCGTACCCGTACATGTTTCCTCCTCCAGATC CGGCGTTTGCAGCCCAGTATATGGGAGTTATGCCTCCTGCCGTCCTCCAC CCTCTTCAAGCTTCGCATGCGCCAATTTCGAGCCAAACCAATCAACATGA CAAGGGAAACGAGGGGCAGGAACAAAAGCAAAGCAGATATTGGACTCCAG ATGAACATGAACGATTTCTTGCAGGCATGAAAGCATGCGGGCCGAAAAAC TATTTGCAGATATCCGAGTATGTCGGAACCCGAAATGCCAAACAAGTTCG CACGCACGCACAGAAATACCAAAAAAGACTGGAACGCGAGGATGCCAAGC GACGAAGTGATATGCGCCACGGAAGGTTAAGCAACGAGGATCCCACAAAC TCCATTGCAGCAGATGCAGCAGCAGCAGTTAAGGCTGCTGCTGCTGCGGC GATGCGCGGTAAAGTTCCGGGTACTTGCTCTGTGGTTTTCAAAGATTCGG ACTCAACAGGAACGCCTGCAGGGCCTAGCAGTTCTTCGAGTGGGAAACAG TGCCATTCGTCACATCATAATTCTCATGGTGCAAGCAGTGGTGATGGAAG TATAGGCGCCAATAGGATTGGAGAGCAGCATACAGAAACCAGCGGCACCG ACAATCACTCAGCAGCTGTTGCTGCCATAGCAGCAGAGGCCAAGGCACTT GGACATGGGGTGTTGCCCCTGGAAGCTATCGAAATTCCGCCTATGTCTTT TAGGAACACACAACCGAAGATGGTGGACAAGGATACCGGAAGACTGGAAG ACGACAAATCACCGAAAGGAAGCATAACAGGGCGGACCACAGAGCCAATG GCTCCACGAAACAGCTCAGAACCTTCGAACATAATTGCTTTAAAGGGATG TAGTGTGGCAGCACCATCACAAAGCAACAAAGGGTGTGCAGAAACCACAG AGACCTCCCACAAAGAAGCAGAAGATGCTTCAGCAATAGGCAACATTTTG CAGGACTGTGCATCAAAGGATGAAGCCGCAGCAAGTCTCCAAGGCGATCA TGGTGGAAGCTGCACTGGAAGAGCAGCAAGCACATCCGAGATGTTGGCCA GTAGTGCAGCGGAGAGCAAGATGAAGACTGACCAAGGCAATGCAAGCACC AGCGGATGTCTCGACGGTGCGAAGGATAGGGGACGAGAGCCGCTTCAATC ACGAAGTACGCGATGTACAGAAGCAGGAAACAAACAGAACGAGGCTGATA GGAAATCAGCTGGCTCTGTTGTACATACGAAACTAACCAAAACAACTGTA GGACATGAGGAAGTCACGAACAAGAAAGGCTCCGGAACGCATGATGGAAT GAATGCTGTGAAGTTTGAGCCAGAAAGTGTTGATAGTTGCGCTAACTTAA CAGCGGAGAAGAACGTGCGAGGTTCAAGTGCAGGTCAAAATGAGGAAACA GCCGGAGATGGCATAGTGAAACAAGAATGTGACATGGCGGTCGAAGCAGA TAAGAAATCACAGAGGCAGCATCGACACGATTCTGAGAGCGACCGAGCGA AGAACGGAGTCAATTCAGATGGAACGAAACCAAAATCAGAAGACGTCGGA GAACGAAGTCACAGCGCTGATGAAGGGTGCAACGATGGGGAAGTGCGACA AGAGAGGGCCATTGGAGACGGAAGAGGGACGACGGGGGACGCGGACGACG CCGAAAAGGCCGGCGCGGCAGAAAGCAGGAAGCGCATGCGCGAAGCTGAC GAGAAGGAGGCGAACAAAAGGGCGAGGACGGACGACGAGGCTGAGGGGGA AGCGGCCGCGGGGGGCAGCCGGAACGACACGACGGTGCGTCAAATGCGCT CAAACCGCGGAAACATCACGGCGGGCGCAAAACAAAACATAGCGCGCGGC GCTGCGAAGCGGGCGCGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:878494..880914-

>Gvermi6998.t1 ID=Gvermi6998.t1|Name=Gvermi6998.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2421bp|location=Sequence derived from alignment at ScGOVlb_24229:878494..880914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACCGCAAGGCAGAACCGAATTGCACCTCTGCTCCAGATACCTC
GAACCCAACTCCTGAGAAAGAGACCGAAGACAAACCGCAATGTCAACAAA
CCTCGGGTGATTCCTCGCAAAATGCTACATCACAAGTGCGCATTTCCGTG
TTGAAAGCCATAGCGAACCATCAGAAGAAAAGAATATCCGAATTGGAGCG
CACCTTGGAAAAGAAAAGGGCGACCATACAGCGTCTTTCAGCCACACCCC
CACACCATCATCCGCCTCTTCCGATGGTTCCACCCGCTGCATTACCCGCG
ATGCCCACAATCCCGACAAGTGCTCCAATTACTCCAGCCCCAACAAGCTC
CCCGCATATGAACGCGTCGCCAGCCTCAGGGGCCGTTACATCAAGCTCAC
AGCCAGCATCTCAAACAACCCCAGCTGTCTCTCAACCACAGCCCTCGCCA
TCGACAAGCGCGAGCAATCACGTTATGCCCACGCCTATGCTCGGGTTTCC
TCCACAACCGCATGTTTCTCCGTACCCGTACATGTTTCCTCCTCCAGATC
CGGCGTTTGCAGCCCAGTATATGGGAGTTATGCCTCCTGCCGTCCTCCAC
CCTCTTCAAGCTTCGCATGCGCCAATTTCGAGCCAAACCAATCAACATGA
CAAGGGAAACGAGGGGCAGGAACAAAAGCAAAGCAGATATTGGACTCCAG
ATGAACATGAACGATTTCTTGCAGGCATGAAAGCATGCGGGCCGAAAAAC
TATTTGCAGATATCCGAGTATGTCGGAACCCGAAATGCCAAACAAGTTCG
CACGCACGCACAGAAATACCAAAAAAGACTGGAACGCGAGGATGCCAAGC
GACGAAGTGATATGCGCCACGGAAGGTTAAGCAACGAGGATCCCACAAAC
TCCATTGCAGCAGATGCAGCAGCAGCAGTTAAGGCTGCTGCTGCTGCGGC
GATGCGCGGTAAAGTTCCGGGTACTTGCTCTGTGGTTTTCAAAGATTCGG
ACTCAACAGGAACGCCTGCAGGGCCTAGCAGTTCTTCGAGTGGGAAACAG
TGCCATTCGTCACATCATAATTCTCATGGTGCAAGCAGTGGTGATGGAAG
TATAGGCGCCAATAGGATTGGAGAGCAGCATACAGAAACCAGCGGCACCG
ACAATCACTCAGCAGCTGTTGCTGCCATAGCAGCAGAGGCCAAGGCACTT
GGACATGGGGTGTTGCCCCTGGAAGCTATCGAAATTCCGCCTATGTCTTT
TAGGAACACACAACCGAAGATGGTGGACAAGGATACCGGAAGACTGGAAG
ACGACAAATCACCGAAAGGAAGCATAACAGGGCGGACCACAGAGCCAATG
GCTCCACGAAACAGCTCAGAACCTTCGAACATAATTGCTTTAAAGGGATG
TAGTGTGGCAGCACCATCACAAAGCAACAAAGGGTGTGCAGAAACCACAG
AGACCTCCCACAAAGAAGCAGAAGATGCTTCAGCAATAGGCAACATTTTG
CAGGACTGTGCATCAAAGGATGAAGCCGCAGCAAGTCTCCAAGGCGATCA
TGGTGGAAGCTGCACTGGAAGAGCAGCAAGCACATCCGAGATGTTGGCCA
GTAGTGCAGCGGAGAGCAAGATGAAGACTGACCAAGGCAATGCAAGCACC
AGCGGATGTCTCGACGGTGCGAAGGATAGGGGACGAGAGCCGCTTCAATC
ACGAAGTACGCGATGTACAGAAGCAGGAAACAAACAGAACGAGGCTGATA
GGAAATCAGCTGGCTCTGTTGTACATACGAAACTAACCAAAACAACTGTA
GGACATGAGGAAGTCACGAACAAGAAAGGCTCCGGAACGCATGATGGAAT
GAATGCTGTGAAGTTTGAGCCAGAAAGTGTTGATAGTTGCGCTAACTTAA
CAGCGGAGAAGAACGTGCGAGGTTCAAGTGCAGGTCAAAATGAGGAAACA
GCCGGAGATGGCATAGTGAAACAAGAATGTGACATGGCGGTCGAAGCAGA
TAAGAAATCACAGAGGCAGCATCGACACGATTCTGAGAGCGACCGAGCGA
AGAACGGAGTCAATTCAGATGGAACGAAACCAAAATCAGAAGACGTCGGA
GAACGAAGTCACAGCGCTGATGAAGGGTGCAACGATGGGGAAGTGCGACA
AGAGAGGGCCATTGGAGACGGAAGAGGGACGACGGGGGACGCGGACGACG
CCGAAAAGGCCGGCGCGGCAGAAAGCAGGAAGCGCATGCGCGAAGCTGAC
GAGAAGGAGGCGAACAAAAGGGCGAGGACGGACGACGAGGCTGAGGGGGA
AGCGGCCGCGGGGGGCAGCCGGAACGACACGACGGTGCGTCAAATGCGCT
CAAACCGCGGAAACATCACGGCGGGCGCAAAACAAAACATAGCGCGCGGC
GCTGCGAAGCGGGCGCGATAA
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