Gvermi6997.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6997.t1
Unique Name	Gvermi6997.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:877354..878301 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005848440.1
Max annot lvl	3041\|Chlorophyta
Evalue	5.65e-46
EggNOG OGs	2B5H6@1\|root,2S0J1@2759\|Eukaryota,381MC@33090\|Viridiplantae,34MX0@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6997	Gvermi6997	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 877354..878301 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6997.t1.start1	Gvermi6997.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 877354..877356 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6997.t1.CDS1	Gvermi6997.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 877354..878301 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6997.t1.exon1	Gvermi6997.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 877354..878301 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6997.t1.stop1	Gvermi6997.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 878299..878301 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6997.t1	Gvermi6997.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 877354..878301 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:877354..878301+
coding sequence from alignment at ScGOVlb_24229:877354..878301+

mRNA sequence

>Gvermi6997.t1 ID=Gvermi6997.t1|Name=Gvermi6997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MDCYSKRFKKNTLKLVRNQAFAQLFGASKLKVYEASDITGHPNGDGIYTV
FDNSYMISRTTHMLGNVSSQTRPKQDCLLTWEGARPGPSNFEFLAYNESS
DSYIAGREVVEMEDGTIRSQTIDIRFNDNEVIVGEQCDCDFKFTHQNKGF
EGALVITGTTSRSFLLALCEGNYCRGGAKGRQSGNGRIVVMERTYKNKRC
IFETVNVVALPGAADFQDYSAMALWNRTKIAITSQENAAVYIGKLSASAD
SVRIGDGRIYDFPRNDDCEVEFCNVEGIHFLEENVLALVSDSMKGRKQSF
RCRRRDESLHVMAMP*

spliced messenger RNA

>Gvermi6997.t1 ID=Gvermi6997.t1|Name=Gvermi6997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_24229:877354..878301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGTTACTCAAAGCGTTTTAAGAAGAACACTCTTAAGCTGGTGCG
CAACCAAGCTTTTGCTCAACTGTTCGGCGCCTCAAAGCTCAAAGTATACG
AAGCGTCGGACATAACGGGGCATCCAAACGGGGACGGAATCTACACTGTG
TTTGACAATTCGTACATGATCTCACGGACAACTCATATGCTGGGGAACGT
GAGCAGCCAAACGAGGCCCAAACAGGATTGTCTCTTAACGTGGGAAGGCG
CCAGGCCCGGTCCCAGTAATTTTGAATTCTTGGCATACAATGAGAGCTCT
GATTCATACATAGCTGGGCGAGAAGTGGTGGAAATGGAAGACGGAACCAT
TCGATCACAGACCATAGATATAAGATTCAATGATAACGAAGTGATAGTGG
GCGAACAATGCGACTGTGATTTCAAATTCACACACCAAAACAAGGGCTTT
GAGGGTGCGCTAGTGATCACAGGAACGACATCTCGTTCGTTTCTACTAGC
GCTGTGTGAGGGAAACTACTGCAGAGGCGGCGCGAAGGGGCGACAAAGCG
GGAACGGTCGCATCGTAGTGATGGAACGGACCTACAAAAACAAGCGGTGC
ATATTTGAAACAGTGAACGTGGTAGCGTTACCCGGTGCGGCTGATTTCCA
GGATTATTCGGCGATGGCGCTATGGAACAGAACGAAGATAGCAATCACTT
CGCAAGAAAACGCAGCAGTTTACATTGGAAAACTGTCTGCGTCCGCCGAC
AGCGTTCGAATCGGTGACGGAAGAATCTACGACTTTCCGCGAAATGACGA
TTGCGAAGTAGAATTCTGCAACGTTGAAGGCATTCACTTCCTGGAAGAAA
ACGTGCTGGCGCTGGTGAGTGACTCGATGAAGGGACGGAAGCAGAGCTTC
CGGTGCCGGAGGCGCGACGAGTCGCTGCACGTGATGGCGATGCCGTGA

protein sequence of Gvermi6997.t1

>Gvermi6997.t1 ID=Gvermi6997.t1|Name=Gvermi6997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MDCYSKRFKKNTLKLVRNQAFAQLFGASKLKVYEASDITGHPNGDGIYTV
FDNSYMISRTTHMLGNVSSQTRPKQDCLLTWEGARPGPSNFEFLAYNESS
DSYIAGREVVEMEDGTIRSQTIDIRFNDNEVIVGEQCDCDFKFTHQNKGF
EGALVITGTTSRSFLLALCEGNYCRGGAKGRQSGNGRIVVMERTYKNKRC
IFETVNVVALPGAADFQDYSAMALWNRTKIAITSQENAAVYIGKLSASAD
SVRIGDGRIYDFPRNDDCEVEFCNVEGIHFLEENVLALVSDSMKGRKQSF
RCRRRDESLHVMAMP*

mRNA from alignment at ScGOVlb_24229:877354..878301+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6997.t1 ID=Gvermi6997.t1|Name=Gvermi6997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_24229:877354..878301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTGTTACTCAAAGCGTTTTAAGAAGAACACTCTTAAGCTGGTGCG
CAACCAAGCTTTTGCTCAACTGTTCGGCGCCTCAAAGCTCAAAGTATACG
AAGCGTCGGACATAACGGGGCATCCAAACGGGGACGGAATCTACACTGTG
TTTGACAATTCGTACATGATCTCACGGACAACTCATATGCTGGGGAACGT
GAGCAGCCAAACGAGGCCCAAACAGGATTGTCTCTTAACGTGGGAAGGCG
CCAGGCCCGGTCCCAGTAATTTTGAATTCTTGGCATACAATGAGAGCTCT
GATTCATACATAGCTGGGCGAGAAGTGGTGGAAATGGAAGACGGAACCAT
TCGATCACAGACCATAGATATAAGATTCAATGATAACGAAGTGATAGTGG
GCGAACAATGCGACTGTGATTTCAAATTCACACACCAAAACAAGGGCTTT
GAGGGTGCGCTAGTGATCACAGGAACGACATCTCGTTCGTTTCTACTAGC
GCTGTGTGAGGGAAACTACTGCAGAGGCGGCGCGAAGGGGCGACAAAGCG
GGAACGGTCGCATCGTAGTGATGGAACGGACCTACAAAAACAAGCGGTGC
ATATTTGAAACAGTGAACGTGGTAGCGTTACCCGGTGCGGCTGATTTCCA
GGATTATTCGGCGATGGCGCTATGGAACAGAACGAAGATAGCAATCACTT
CGCAAGAAAACGCAGCAGTTTACATTGGAAAACTGTCTGCGTCCGCCGAC
AGCGTTCGAATCGGTGACGGAAGAATCTACGACTTTCCGCGAAATGACGA
TTGCGAAGTAGAATTCTGCAACGTTGAAGGCATTCACTTCCTGGAAGAAA
ACGTGCTGGCGCTGGTGAGTGACTCGATGAAGGGACGGAAGCAGAGCTTC
CGGTGCCGGAGGCGCGACGAGTCGCTGCACGTGATGGCGATGCCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:877354..878301+

>Gvermi6997.t1 ID=Gvermi6997.t1|Name=Gvermi6997.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_24229:877354..878301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTGTTACTCAAAGCGTTTTAAGAAGAACACTCTTAAGCTGGTGCG
CAACCAAGCTTTTGCTCAACTGTTCGGCGCCTCAAAGCTCAAAGTATACG
AAGCGTCGGACATAACGGGGCATCCAAACGGGGACGGAATCTACACTGTG
TTTGACAATTCGTACATGATCTCACGGACAACTCATATGCTGGGGAACGT
GAGCAGCCAAACGAGGCCCAAACAGGATTGTCTCTTAACGTGGGAAGGCG
CCAGGCCCGGTCCCAGTAATTTTGAATTCTTGGCATACAATGAGAGCTCT
GATTCATACATAGCTGGGCGAGAAGTGGTGGAAATGGAAGACGGAACCAT
TCGATCACAGACCATAGATATAAGATTCAATGATAACGAAGTGATAGTGG
GCGAACAATGCGACTGTGATTTCAAATTCACACACCAAAACAAGGGCTTT
GAGGGTGCGCTAGTGATCACAGGAACGACATCTCGTTCGTTTCTACTAGC
GCTGTGTGAGGGAAACTACTGCAGAGGCGGCGCGAAGGGGCGACAAAGCG
GGAACGGTCGCATCGTAGTGATGGAACGGACCTACAAAAACAAGCGGTGC
ATATTTGAAACAGTGAACGTGGTAGCGTTACCCGGTGCGGCTGATTTCCA
GGATTATTCGGCGATGGCGCTATGGAACAGAACGAAGATAGCAATCACTT
CGCAAGAAAACGCAGCAGTTTACATTGGAAAACTGTCTGCGTCCGCCGAC
AGCGTTCGAATCGGTGACGGAAGAATCTACGACTTTCCGCGAAATGACGA
TTGCGAAGTAGAATTCTGCAACGTTGAAGGCATTCACTTCCTGGAAGAAA
ACGTGCTGGCGCTGGTGAGTGACTCGATGAAGGGACGGAAGCAGAGCTTC
CGGTGCCGGAGGCGCGACGAGTCGCTGCACGTGATGGCGATGCCGTGA