Gvermi6991.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6991.t1
Unique NameGvermi6991.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:850838..851591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9371.XP_004717593.1
Preferred nameVBP1
PFAMsPrefoldin
Max annot lvl33208|Metazoa
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005844,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007163,GO:0007275,GO:0007399,GO:0007405,GO:0008092,GO:0008150,GO:0008283,GO:0008356,GO:0009987,GO:0015631,GO:0016043,GO:0016272,GO:0017145,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0031023,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0036445,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045165,GO:0045196,GO:0048103,GO:0048285,GO:0048487,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051225,GO:0051301,GO:0051321,GO:0055057,GO:0055059,GO:0061351,GO:0065003,GO:0070925,GO:0071840,GO:0072089,GO:0090306,GO:0090307,GO:0098722,GO:0140013,GO:0140014,GO:1902850,GO:1903046,GO:1903047,GO:1990904
Evalue2.31e-35
EggNOG OGsKOG3313@1|root,KOG3313@2759|Eukaryota,38DQ2@33154|Opisthokonta,3BF03@33208|Metazoa,3CXQV@33213|Bilateria,4880X@7711|Chordata,48V47@7742|Vertebrata,3J42Z@40674|Mammalia,34UN0@311790|Afrotheria
DescriptionPrefoldin subunit 3
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6991Gvermi6991Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 850838..851591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6991.t1Gvermi6991.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 850838..851591 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6991.t1.start1Gvermi6991.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 850838..850840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6991.t1.CDS1Gvermi6991.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 850838..850945 +
Gvermi6991.t1.CDS2Gvermi6991.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 851055..851591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6991.t1.exon1Gvermi6991.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 850838..850945 +
Gvermi6991.t1.exon2Gvermi6991.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 851055..851591 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6991.t1.intron1Gvermi6991.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 850946..851054 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6991.t1.stop1Gvermi6991.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 851589..851591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6991.t1 ID=Gvermi6991.t1|Name=Gvermi6991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=215bp
MATALDAKAHSKEADALVSTPVADDFHHGIPKAIFFEDIPQQVEQHSAPL
LIEKLSGLSQRYRFFEGKLVKSRDTLEEKVAEVRRALKAVQSLAERCSRA
GENAKDIETHFELSDGIYAKACIPPTSKVCLWLGANVMVEYSHSEAETLL
SNNLAKAEKSYEETCADISYLRDQLNTTDVNLSRVYNHHVEAMRSASNKS
KSGKAGVSLPLQAK*
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spliced messenger RNA

>Gvermi6991.t1 ID=Gvermi6991.t1|Name=Gvermi6991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=645bp|location=Sequence derived from alignment at ScGOVlb_24229:850838..851591+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCGCTTTGGACGCAAAAGCACATTCGAAAGAAGCAGACGCACT
CGTTTCCACGCCAGTTGCAGACGATTTTCATCATGGCATTCCCAAAGCTA
TTTTTTTCGAGGATATCCCGCAACAAGTTGAACAGCACTCGGCACCTTTG
CTTATCGAGAAACTTTCAGGTCTAAGCCAAAGGTATCGCTTTTTTGAGGG
AAAGTTGGTGAAGAGTCGAGACACCCTCGAAGAAAAGGTAGCTGAGGTTC
GCAGGGCTCTAAAGGCTGTGCAGTCTTTAGCTGAAAGATGTTCAAGAGCC
GGTGAGAACGCTAAAGACATCGAGACCCACTTTGAATTAAGCGATGGTAT
CTATGCGAAAGCCTGTATACCACCAACGAGCAAAGTATGTTTGTGGCTGG
GTGCCAATGTTATGGTTGAGTATTCACACTCCGAAGCCGAAACCCTTTTA
TCTAATAACTTGGCTAAAGCTGAAAAGAGCTACGAAGAGACATGCGCAGA
CATCAGCTATCTGAGAGATCAACTGAACACGACCGATGTGAATCTATCAA
GGGTATACAACCATCATGTGGAAGCAATGCGTTCCGCAAGCAACAAATCT
AAATCTGGGAAAGCGGGAGTGAGCTTACCACTGCAGGCAAAGTAG
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protein sequence of Gvermi6991.t1

>Gvermi6991.t1 ID=Gvermi6991.t1|Name=Gvermi6991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=215bp
MATALDAKAHSKEADALVSTPVADDFHHGIPKAIFFEDIPQQVEQHSAPL
LIEKLSGLSQRYRFFEGKLVKSRDTLEEKVAEVRRALKAVQSLAERCSRA
GENAKDIETHFELSDGIYAKACIPPTSKVCLWLGANVMVEYSHSEAETLL
SNNLAKAEKSYEETCADISYLRDQLNTTDVNLSRVYNHHVEAMRSASNKS
KSGKAGVSLPLQAK*
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mRNA from alignment at ScGOVlb_24229:850838..851591+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6991.t1 ID=Gvermi6991.t1|Name=Gvermi6991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=754bp|location=Sequence derived from alignment at ScGOVlb_24229:850838..851591+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACCGCTTTGGACGCAAAAGCACATTCGAAAGAAGCAGACGCACT
CGTTTCCACGCCAGTTGCAGACGATTTTCATCATGGCATTCCCAAAGCTA
TTTTTTTCGTATGTCAACCTTGCTTTTGTTCCCGCAATTTTCTCGAACCA
CGTCTGACAACTTTCCTCCACGCACATCTTCGGTGATCCGCTTGGCTTTT
TTCTTTTCTTTTTGTAGGAGGATATCCCGCAACAAGTTGAACAGCACTCG
GCACCTTTGCTTATCGAGAAACTTTCAGGTCTAAGCCAAAGGTATCGCTT
TTTTGAGGGAAAGTTGGTGAAGAGTCGAGACACCCTCGAAGAAAAGGTAG
CTGAGGTTCGCAGGGCTCTAAAGGCTGTGCAGTCTTTAGCTGAAAGATGT
TCAAGAGCCGGTGAGAACGCTAAAGACATCGAGACCCACTTTGAATTAAG
CGATGGTATCTATGCGAAAGCCTGTATACCACCAACGAGCAAAGTATGTT
TGTGGCTGGGTGCCAATGTTATGGTTGAGTATTCACACTCCGAAGCCGAA
ACCCTTTTATCTAATAACTTGGCTAAAGCTGAAAAGAGCTACGAAGAGAC
ATGCGCAGACATCAGCTATCTGAGAGATCAACTGAACACGACCGATGTGA
ATCTATCAAGGGTATACAACCATCATGTGGAAGCAATGCGTTCCGCAAGC
AACAAATCTAAATCTGGGAAAGCGGGAGTGAGCTTACCACTGCAGGCAAA
GTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:850838..851591+

>Gvermi6991.t1 ID=Gvermi6991.t1|Name=Gvermi6991.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=645bp|location=Sequence derived from alignment at ScGOVlb_24229:850838..851591+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCACCGCTTTGGACGCAAAAGCACATTCGAAAGAAGCAGACGCACT
CGTTTCCACGCCAGTTGCAGACGATTTTCATCATGGCATTCCCAAAGCTA
TTTTTTTCGAGGATATCCCGCAACAAGTTGAACAGCACTCGGCACCTTTG
CTTATCGAGAAACTTTCAGGTCTAAGCCAAAGGTATCGCTTTTTTGAGGG
AAAGTTGGTGAAGAGTCGAGACACCCTCGAAGAAAAGGTAGCTGAGGTTC
GCAGGGCTCTAAAGGCTGTGCAGTCTTTAGCTGAAAGATGTTCAAGAGCC
GGTGAGAACGCTAAAGACATCGAGACCCACTTTGAATTAAGCGATGGTAT
CTATGCGAAAGCCTGTATACCACCAACGAGCAAAGTATGTTTGTGGCTGG
GTGCCAATGTTATGGTTGAGTATTCACACTCCGAAGCCGAAACCCTTTTA
TCTAATAACTTGGCTAAAGCTGAAAAGAGCTACGAAGAGACATGCGCAGA
CATCAGCTATCTGAGAGATCAACTGAACACGACCGATGTGAATCTATCAA
GGGTATACAACCATCATGTGGAAGCAATGCGTTCCGCAAGCAACAAATCT
AAATCTGGGAAAGCGGGAGTGAGCTTACCACTGCAGGCAAAGTAG
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