Gvermi6990.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6990.t1
Unique Name	Gvermi6990.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:845605..847128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	185453.XP_006867871.1
Preferred name	CTDSP1
PFAMs	NIF
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K15731
GOs	GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007346,GO:0007399,GO:0008150,GO:0008152,GO:0008420,GO:0009889,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010563,GO:0010564,GO:0010605,GO:0010721,GO:0010948,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022008,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045786,GO:0045930,GO:0045936,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903506,GO:2000026,GO:2000045,GO:2000112,GO:2000134,GO:2001141
Evalue	2.35e-58
EggNOG OGs	COG5190@1\|root,KOG1605@2759\|Eukaryota,38D0R@33154\|Opisthokonta,3BA7M@33208\|Metazoa,3CXK1@33213\|Bilateria,487HQ@7711\|Chordata,48XAR@7742\|Vertebrata,3JB2I@40674\|Mammalia,35404@311790\|Afrotheria
EC	3.1.3.16
Description	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1
COG category	K
BRITE	ko00000,ko01000,ko01009,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6990	Gvermi6990	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 845605..847128 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6990.t1.start1	Gvermi6990.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 845605..845607 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6990.t1.CDS1	Gvermi6990.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 845605..847128 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6990.t1.exon1	Gvermi6990.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 845605..847128 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6990.t1.stop1	Gvermi6990.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 847126..847128 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6990.t1	Gvermi6990.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 845605..847128 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:845605..847128+
coding sequence from alignment at ScGOVlb_24229:845605..847128+

mRNA sequence

>Gvermi6990.t1 ID=Gvermi6990.t1|Name=Gvermi6990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=508bp
MNPSPDAASKAASQAAGESAPAKPIAAVPATSEPATTEPVATEPVAIEPV
ATEPIATEPVATEPVATEPVATEPVATEPVTTEPVTTEPVITEPAATEPA
ATEPAATEPAATEPAATEPAATEPISPKPVPTPSTSSQSPAVALEPAAPN
QTPSVSKLSACEPTVEHSRESFAEPSSSASRTPSSESEDGDTVVDDLPTK
QPKSPASASAEATPTTLNIIHSVANPAAVPPLSPLSDATSSTPRSGFFSI
FSPRNAKSTSPLRRLFSPRWFSSTPVDHRQTESTMTTTPPWRKNLACCFV
RQQTLDESLPDYDYVEQLKNLEPTYEPEPPLLPSPSPHAKDRICLVLDLD
ETLVHSSFTPLPNADFEIPLDMQGEIHTVYVKKRPGVDNFLKKASEWFEI
VIFTASLALYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGRD
LKRTVIIDNSPLSYVLQPENAIPISAFFTDDNDRELDKTLSLLEQTRNLE
DVRKVLA*

spliced messenger RNA

>Gvermi6990.t1 ID=Gvermi6990.t1|Name=Gvermi6990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_24229:845605..847128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCATCGCCCGACGCGGCTTCCAAGGCCGCATCGCAAGCTGCCGG
GGAGTccgcccccgccaaacccatcgccgccgtgcccgccacctctgaac
ccgccaccaccgagcccgtcgccaccgagcccgtcgccatcgagcccgtc
gccaccgagcccatcgccaccgagcccgtcgctaccgagcccgtcgccac
cgagcccgttgccaccgagcccgtcgccaccgagcccgtcactaccgagc
ccgtcaccaccgagcccgtcatcaccgagcccgccgccaccgagcccgcc
gccaccgagcccgccgccaccgagcccgccgccaccgagcccgccgccac
cgagcccgccgccaccgagcccatctcccccaagcccgtacccaccccct
cgacctcatcgcagtcccctgctgttgcgctcgagcccgctgcacccAAC
CAAACTCCCTCCGTGTCCAAGCTTTCAGCGTGCGAACCCACTGTCGAGCA
CAGCCGTGAGTCGTTTGCCGAACCGTCCTCCTCGGCCTCAAGGACGCCCT
CATCCGAATCTGAGGATGGTGACACGGTTGTCGATGACCTTCCGACCAAG
CAACCCAAATCCCCCGCATCTGCAAGTGCCGAAGCGACGCCTACAACTCT
CAACATCATTCATTCGGTTGCGAATCCAGCCGCCGTGCCTCCGCTTTCGC
CTCTTTCAGATGCTACATCGTCCACACCTCGCTCGGGCTTCTTCTCTATA
TTCTCTCCGCGTAATGCCAAGTCCACTTCACCACTGCGCAGACTCTTTTC
CCCTCGTTGGTTCAGCTCGACTCCGGTTGACCACCGCCAAACGGAGTCCA
CCATGACAACCACCCCTCCATGGAGAAAGAACCTTGCCTGTTGCTTTGTT
CGCCAACAAACTCTGGACGAATCATTGCCGGATTATGACTATGTAGAACA
GCTAAAGAACCTCGAACCCACGTACGAGCCGGAGCCACCACTTCTTCCAA
GCCCTTCACCGCATGCGAAAGATCGAATATGTCTTGTCCTTGACCTTGAC
GAAACACTTGTGCACAGCAGCTTCACCCCTCTGCCCAATGCCGACTTTGA
AATTCCCTTGGACATGCAGGGTGAGATACACACAGTATACGTCAAGAAGC
GTCCAGGAGTTGACAATTTCCTCAAGAAAGCCAGCGAATGGTTCGAGATT
GTCATCTTTACAGCGTCTCTTGCTTTGTACGCGAATCCGGTCGTGGACTT
GTTAGACCCTCACAATTTGGTTGAGCTGAGACTCTACCGCGAACATTGTG
TGCTCATTGGAGGCTGCTACGTGAAAGATATCGCAAAACTTGGTCGCGAT
TTGAAGAGAACCGTCATTATTGACAACAGCCCACTGAGTTACGTGCTTCA
ACCGGAAAACGCCATCCCGATATCAGCGTTTTTCACTGATGATAATGACA
GAGAGCTTGACAAGACACTATCACTACTTGAGCAAACTAGAAACCTCGAG
GATGTCAGAAAAGTGCTTGCATAA

protein sequence of Gvermi6990.t1

>Gvermi6990.t1 ID=Gvermi6990.t1|Name=Gvermi6990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=508bp
MNPSPDAASKAASQAAGESAPAKPIAAVPATSEPATTEPVATEPVAIEPV
ATEPIATEPVATEPVATEPVATEPVATEPVTTEPVTTEPVITEPAATEPA
ATEPAATEPAATEPAATEPAATEPISPKPVPTPSTSSQSPAVALEPAAPN
QTPSVSKLSACEPTVEHSRESFAEPSSSASRTPSSESEDGDTVVDDLPTK
QPKSPASASAEATPTTLNIIHSVANPAAVPPLSPLSDATSSTPRSGFFSI
FSPRNAKSTSPLRRLFSPRWFSSTPVDHRQTESTMTTTPPWRKNLACCFV
RQQTLDESLPDYDYVEQLKNLEPTYEPEPPLLPSPSPHAKDRICLVLDLD
ETLVHSSFTPLPNADFEIPLDMQGEIHTVYVKKRPGVDNFLKKASEWFEI
VIFTASLALYANPVVDLLDPHNLVELRLYREHCVLIGGCYVKDIAKLGRD
LKRTVIIDNSPLSYVLQPENAIPISAFFTDDNDRELDKTLSLLEQTRNLE
DVRKVLA*

mRNA from alignment at ScGOVlb_24229:845605..847128+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6990.t1 ID=Gvermi6990.t1|Name=Gvermi6990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_24229:845605..847128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCCATCGCCCGACGCGGCTTCCAAGGCCGCATCGCAAGCTGCCGG
GGAGTccgcccccgccaaacccatcgccgccgtgcccgccacctctgaac
ccgccaccaccgagcccgtcgccaccgagcccgtcgccatcgagcccgtc
gccaccgagcccatcgccaccgagcccgtcgctaccgagcccgtcgccac
cgagcccgttgccaccgagcccgtcgccaccgagcccgtcactaccgagc
ccgtcaccaccgagcccgtcatcaccgagcccgccgccaccgagcccgcc
gccaccgagcccgccgccaccgagcccgccgccaccgagcccgccgccac
cgagcccgccgccaccgagcccatctcccccaagcccgtacccaccccct
cgacctcatcgcagtcccctgctgttgcgctcgagcccgctgcacccAAC
CAAACTCCCTCCGTGTCCAAGCTTTCAGCGTGCGAACCCACTGTCGAGCA
CAGCCGTGAGTCGTTTGCCGAACCGTCCTCCTCGGCCTCAAGGACGCCCT
CATCCGAATCTGAGGATGGTGACACGGTTGTCGATGACCTTCCGACCAAG
CAACCCAAATCCCCCGCATCTGCAAGTGCCGAAGCGACGCCTACAACTCT
CAACATCATTCATTCGGTTGCGAATCCAGCCGCCGTGCCTCCGCTTTCGC
CTCTTTCAGATGCTACATCGTCCACACCTCGCTCGGGCTTCTTCTCTATA
TTCTCTCCGCGTAATGCCAAGTCCACTTCACCACTGCGCAGACTCTTTTC
CCCTCGTTGGTTCAGCTCGACTCCGGTTGACCACCGCCAAACGGAGTCCA
CCATGACAACCACCCCTCCATGGAGAAAGAACCTTGCCTGTTGCTTTGTT
CGCCAACAAACTCTGGACGAATCATTGCCGGATTATGACTATGTAGAACA
GCTAAAGAACCTCGAACCCACGTACGAGCCGGAGCCACCACTTCTTCCAA
GCCCTTCACCGCATGCGAAAGATCGAATATGTCTTGTCCTTGACCTTGAC
GAAACACTTGTGCACAGCAGCTTCACCCCTCTGCCCAATGCCGACTTTGA
AATTCCCTTGGACATGCAGGGTGAGATACACACAGTATACGTCAAGAAGC
GTCCAGGAGTTGACAATTTCCTCAAGAAAGCCAGCGAATGGTTCGAGATT
GTCATCTTTACAGCGTCTCTTGCTTTGTACGCGAATCCGGTCGTGGACTT
GTTAGACCCTCACAATTTGGTTGAGCTGAGACTCTACCGCGAACATTGTG
TGCTCATTGGAGGCTGCTACGTGAAAGATATCGCAAAACTTGGTCGCGAT
TTGAAGAGAACCGTCATTATTGACAACAGCCCACTGAGTTACGTGCTTCA
ACCGGAAAACGCCATCCCGATATCAGCGTTTTTCACTGATGATAATGACA
GAGAGCTTGACAAGACACTATCACTACTTGAGCAAACTAGAAACCTCGAG
GATGTCAGAAAAGTGCTTGCATAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:845605..847128+

>Gvermi6990.t1 ID=Gvermi6990.t1|Name=Gvermi6990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1524bp|location=Sequence derived from alignment at ScGOVlb_24229:845605..847128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCCATCGCCCGACGCGGCTTCCAAGGCCGCATCGCAAGCTGCCGG
GGAGTccgcccccgccaaacccatcgccgccgtgcccgccacctctgaac
ccgccaccaccgagcccgtcgccaccgagcccgtcgccatcgagcccgtc
gccaccgagcccatcgccaccgagcccgtcgctaccgagcccgtcgccac
cgagcccgttgccaccgagcccgtcgccaccgagcccgtcactaccgagc
ccgtcaccaccgagcccgtcatcaccgagcccgccgccaccgagcccgcc
gccaccgagcccgccgccaccgagcccgccgccaccgagcccgccgccac
cgagcccgccgccaccgagcccatctcccccaagcccgtacccaccccct
cgacctcatcgcagtcccctgctgttgcgctcgagcccgctgcacccAAC
CAAACTCCCTCCGTGTCCAAGCTTTCAGCGTGCGAACCCACTGTCGAGCA
CAGCCGTGAGTCGTTTGCCGAACCGTCCTCCTCGGCCTCAAGGACGCCCT
CATCCGAATCTGAGGATGGTGACACGGTTGTCGATGACCTTCCGACCAAG
CAACCCAAATCCCCCGCATCTGCAAGTGCCGAAGCGACGCCTACAACTCT
CAACATCATTCATTCGGTTGCGAATCCAGCCGCCGTGCCTCCGCTTTCGC
CTCTTTCAGATGCTACATCGTCCACACCTCGCTCGGGCTTCTTCTCTATA
TTCTCTCCGCGTAATGCCAAGTCCACTTCACCACTGCGCAGACTCTTTTC
CCCTCGTTGGTTCAGCTCGACTCCGGTTGACCACCGCCAAACGGAGTCCA
CCATGACAACCACCCCTCCATGGAGAAAGAACCTTGCCTGTTGCTTTGTT
CGCCAACAAACTCTGGACGAATCATTGCCGGATTATGACTATGTAGAACA
GCTAAAGAACCTCGAACCCACGTACGAGCCGGAGCCACCACTTCTTCCAA
GCCCTTCACCGCATGCGAAAGATCGAATATGTCTTGTCCTTGACCTTGAC
GAAACACTTGTGCACAGCAGCTTCACCCCTCTGCCCAATGCCGACTTTGA
AATTCCCTTGGACATGCAGGGTGAGATACACACAGTATACGTCAAGAAGC
GTCCAGGAGTTGACAATTTCCTCAAGAAAGCCAGCGAATGGTTCGAGATT
GTCATCTTTACAGCGTCTCTTGCTTTGTACGCGAATCCGGTCGTGGACTT
GTTAGACCCTCACAATTTGGTTGAGCTGAGACTCTACCGCGAACATTGTG
TGCTCATTGGAGGCTGCTACGTGAAAGATATCGCAAAACTTGGTCGCGAT
TTGAAGAGAACCGTCATTATTGACAACAGCCCACTGAGTTACGTGCTTCA
ACCGGAAAACGCCATCCCGATATCAGCGTTTTTCACTGATGATAATGACA
GAGAGCTTGACAAGACACTATCACTACTTGAGCAAACTAGAAACCTCGAG
GATGTCAGAAAAGTGCTTGCATAA