Gvermi6988.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6988.t1
Unique NameGvermi6988.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:840685..842138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78579.XP_003662172.1
PFAMsRRM_1
Max annot lvl4751|Fungi
KEGG koko:K12897
KEGG Pathwayko03040,map03040
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051276,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564
Evalue1.2e-22
EggNOG OGs2BE8F@1|root,2S146@2759|Eukaryota,3A5W1@33154|Opisthokonta,3P611@4751|Fungi,3QSTR@4890|Ascomycota,212CB@147550|Sordariomycetes,3U7G8@5139|Sordariales,3H9MR@35718|Chaetomiaceae
DescriptionRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
COG categoryA
BRITEko00000,ko00001,ko01009,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6988Gvermi6988Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 840685..842138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6988.t1Gvermi6988.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 840685..842138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6988.t1.start1Gvermi6988.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 840685..840687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6988.t1.CDS1Gvermi6988.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 840685..841449 +
Gvermi6988.t1.CDS2Gvermi6988.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 841590..842138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6988.t1.exon1Gvermi6988.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 840685..841449 +
Gvermi6988.t1.exon2Gvermi6988.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 841590..842138 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6988.t1.intron1Gvermi6988.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 841450..841589 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6988.t1.stop1Gvermi6988.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 842136..842138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6988.t1 ID=Gvermi6988.t1|Name=Gvermi6988.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp
MTVPYGEGAAASPRRDPPRDKDPYAPRKPPHDRHQEDRYHDEPMDHPRRD
HPTRHYARGSDRRLSPQRHHPRDDHHYPRDRDQPSPSRPDHQPRDPLPPH
HAPDHPSSPPPAEHMPHRRSHDAHGQNGNRRPPADSDADSDRNERRYDPD
HNTKPYGHEDKPTVHRQPPNASESARDSHQPPRSRPQSEEPNMAQPAENG
NSADAARAQSDKQAPHPDAAPHPGAEGSAPNLINLFVRNVARHVVEDQLV
TLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFE
GRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYG
DPYMRRGSYRGRYGDPSRSRYDDRGWDSRRDQRPPYGRSPYEERDRIRRR
YEGYEEGRGYPPRDLDRDQRPRERQPPVPRESADDYI*
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spliced messenger RNA

>Gvermi6988.t1 ID=Gvermi6988.t1|Name=Gvermi6988.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at ScGOVlb_24229:840685..842138+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGCCGTATGGTGAAGGAGCCGCCGCTTCTCCGCGCCGCGACCC
TCCCCGCGACAAGGACCCCTACGCCCCCCGCAAGCCGCCGCACGACCGCC
ACCAAGAAGACCGTTACCACGATGAGCCCATGGACCACCCCCGCCGCGAC
CACCCCACTCGCCACTACGCCCGTGGATCTGACCGCCGCCTCTCCCCCCA
GCGCCACCACCCCCGCGACGACCACCACTACCCTCGCGACCGCGACCAGC
CCTCGCCGAGCCGTCCCGACCATCAGCCCCGCGACCCGCTCCCCCCGCAC
CACGCCCCCGACCACCCTTCCTCGCCGCCCCCCGCCGAACACATGCCCCA
CCGCCGCTCGCATGACGCGCACGGTCAGAACGGCAACCGACGCCCTCCGG
CTGACAGTGACGCCGATAGCGATCGCAACGAGCGTCGCTATGACCCCGAC
CACAACACCAAGCCGTATGGACACGAGGACAAGCCTACTGTGCACAGGCA
GCCGCCCAATGCTTCCGAGTCTGCTCGCGATTCGCACCAGCCGCCCCGAT
CACGCCCACAGAGTGAGGAACCCAACATGGCGCAGCCTGCTGAGAACGGC
AACTCCGCTGACGCTGCCCGCGCTCAAAGCGACAAACAAGCACCCCACCC
AGACGCCGCCCCTCACCCGGGCGCAGAGGGCAGTGCTCCCAACCTCATCA
ATTTGTTTGTCCGCAATGTAGCGAGGCACGTCGTGGAGGACCAGTTGGTC
ACCTTGTTTAGTAAGTTTGGCAAAGTTGATTCTGCGATTGTTGTGCGTGA
TCCGCTTTCAGGAGAGTGTCGTGGATTCGGCTTCGTTAAGATGTACACAG
AAGAGGCAGCGAAAGCAGCGATGGACAACCTGCGTGACTTTGATTTTGAA
GGTCGGAAAATATCGGTTGAAAGAGCGAAGAGAAACGCACCGCACCAGAG
AACACCGGGGGCGTACATGGGTATCGATCGGCGGATTCGAGACAGGTACG
CTGGGATCAAACGTGCGCGAGAGTACGATACTGGAGGCTACGGATACGGT
GATCCGTACATGAGAAGAGGATCCTACAGAGGCAGATATGGCGACCCCTC
AAGATCTAGGTATGACGATCGAGGATGGGATTCAAGGCGTGATCAGCGTC
CTCCGTATGGCCGTTCTCCATACGAGGAGCGTGATCGAATTAGAAGGAGG
TATGAGGGGTATGAGGAGGGTCGTGGTTATCCACCGCGGGACTTGGATCG
GGACCAACGTCCGCGGGAGCGTCAGCCTCCAGTGCCAAGAGAATCGGCAG
ATGATTATATATGA
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protein sequence of Gvermi6988.t1

>Gvermi6988.t1 ID=Gvermi6988.t1|Name=Gvermi6988.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=438bp
MTVPYGEGAAASPRRDPPRDKDPYAPRKPPHDRHQEDRYHDEPMDHPRRD
HPTRHYARGSDRRLSPQRHHPRDDHHYPRDRDQPSPSRPDHQPRDPLPPH
HAPDHPSSPPPAEHMPHRRSHDAHGQNGNRRPPADSDADSDRNERRYDPD
HNTKPYGHEDKPTVHRQPPNASESARDSHQPPRSRPQSEEPNMAQPAENG
NSADAARAQSDKQAPHPDAAPHPGAEGSAPNLINLFVRNVARHVVEDQLV
TLFSKFGKVDSAIVVRDPLSGECRGFGFVKMYTEEAAKAAMDNLRDFDFE
GRKISVERAKRNAPHQRTPGAYMGIDRRIRDRYAGIKRAREYDTGGYGYG
DPYMRRGSYRGRYGDPSRSRYDDRGWDSRRDQRPPYGRSPYEERDRIRRR
YEGYEEGRGYPPRDLDRDQRPRERQPPVPRESADDYI*
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mRNA from alignment at ScGOVlb_24229:840685..842138+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6988.t1 ID=Gvermi6988.t1|Name=Gvermi6988.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1454bp|location=Sequence derived from alignment at ScGOVlb_24229:840685..842138+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGTGCCGTATGGTGAAGGAGCCGCCGCTTCTCCGCGCCGCGACCC
TCCCCGCGACAAGGACCCCTACGCCCCCCGCAAGCCGCCGCACGACCGCC
ACCAAGAAGACCGTTACCACGATGAGCCCATGGACCACCCCCGCCGCGAC
CACCCCACTCGCCACTACGCCCGTGGATCTGACCGCCGCCTCTCCCCCCA
GCGCCACCACCCCCGCGACGACCACCACTACCCTCGCGACCGCGACCAGC
CCTCGCCGAGCCGTCCCGACCATCAGCCCCGCGACCCGCTCCCCCCGCAC
CACGCCCCCGACCACCCTTCCTCGCCGCCCCCCGCCGAACACATGCCCCA
CCGCCGCTCGCATGACGCGCACGGTCAGAACGGCAACCGACGCCCTCCGG
CTGACAGTGACGCCGATAGCGATCGCAACGAGCGTCGCTATGACCCCGAC
CACAACACCAAGCCGTATGGACACGAGGACAAGCCTACTGTGCACAGGCA
GCCGCCCAATGCTTCCGAGTCTGCTCGCGATTCGCACCAGCCGCCCCGAT
CACGCCCACAGAGTGAGGAACCCAACATGGCGCAGCCTGCTGAGAACGGC
AACTCCGCTGACGCTGCCCGCGCTCAAAGCGACAAACAAGCACCCCACCC
AGACGCCGCCCCTCACCCGGGCGCAGAGGGCAGTGCTCCCAACCTCATCA
ATTTGTTTGTCCGCAATGTAGCGAGGCACGTCGTGGAGGACCAGTTGGTC
ACCTTGTTTAGTAAGGTAAGGCATTGGCTCGTGGAGCTCTGCAACTTTTC
ATGTTACCCCTGCACTTTTCCTGTCATCACAGTATTTTCTAACAAACCTT
CTTTGTGCCACGGGCAACGCTACGCCCTTCACCACTGACGTCGTGACCTT
CTTAGTTTGGCAAAGTTGATTCTGCGATTGTTGTGCGTGATCCGCTTTCA
GGAGAGTGTCGTGGATTCGGCTTCGTTAAGATGTACACAGAAGAGGCAGC
GAAAGCAGCGATGGACAACCTGCGTGACTTTGATTTTGAAGGTCGGAAAA
TATCGGTTGAAAGAGCGAAGAGAAACGCACCGCACCAGAGAACACCGGGG
GCGTACATGGGTATCGATCGGCGGATTCGAGACAGGTACGCTGGGATCAA
ACGTGCGCGAGAGTACGATACTGGAGGCTACGGATACGGTGATCCGTACA
TGAGAAGAGGATCCTACAGAGGCAGATATGGCGACCCCTCAAGATCTAGG
TATGACGATCGAGGATGGGATTCAAGGCGTGATCAGCGTCCTCCGTATGG
CCGTTCTCCATACGAGGAGCGTGATCGAATTAGAAGGAGGTATGAGGGGT
ATGAGGAGGGTCGTGGTTATCCACCGCGGGACTTGGATCGGGACCAACGT
CCGCGGGAGCGTCAGCCTCCAGTGCCAAGAGAATCGGCAGATGATTATAT
ATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:840685..842138+

>Gvermi6988.t1 ID=Gvermi6988.t1|Name=Gvermi6988.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1314bp|location=Sequence derived from alignment at ScGOVlb_24229:840685..842138+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGTGCCGTATGGTGAAGGAGCCGCCGCTTCTCCGCGCCGCGACCC
TCCCCGCGACAAGGACCCCTACGCCCCCCGCAAGCCGCCGCACGACCGCC
ACCAAGAAGACCGTTACCACGATGAGCCCATGGACCACCCCCGCCGCGAC
CACCCCACTCGCCACTACGCCCGTGGATCTGACCGCCGCCTCTCCCCCCA
GCGCCACCACCCCCGCGACGACCACCACTACCCTCGCGACCGCGACCAGC
CCTCGCCGAGCCGTCCCGACCATCAGCCCCGCGACCCGCTCCCCCCGCAC
CACGCCCCCGACCACCCTTCCTCGCCGCCCCCCGCCGAACACATGCCCCA
CCGCCGCTCGCATGACGCGCACGGTCAGAACGGCAACCGACGCCCTCCGG
CTGACAGTGACGCCGATAGCGATCGCAACGAGCGTCGCTATGACCCCGAC
CACAACACCAAGCCGTATGGACACGAGGACAAGCCTACTGTGCACAGGCA
GCCGCCCAATGCTTCCGAGTCTGCTCGCGATTCGCACCAGCCGCCCCGAT
CACGCCCACAGAGTGAGGAACCCAACATGGCGCAGCCTGCTGAGAACGGC
AACTCCGCTGACGCTGCCCGCGCTCAAAGCGACAAACAAGCACCCCACCC
AGACGCCGCCCCTCACCCGGGCGCAGAGGGCAGTGCTCCCAACCTCATCA
ATTTGTTTGTCCGCAATGTAGCGAGGCACGTCGTGGAGGACCAGTTGGTC
ACCTTGTTTAGTAAGTTTGGCAAAGTTGATTCTGCGATTGTTGTGCGTGA
TCCGCTTTCAGGAGAGTGTCGTGGATTCGGCTTCGTTAAGATGTACACAG
AAGAGGCAGCGAAAGCAGCGATGGACAACCTGCGTGACTTTGATTTTGAA
GGTCGGAAAATATCGGTTGAAAGAGCGAAGAGAAACGCACCGCACCAGAG
AACACCGGGGGCGTACATGGGTATCGATCGGCGGATTCGAGACAGGTACG
CTGGGATCAAACGTGCGCGAGAGTACGATACTGGAGGCTACGGATACGGT
GATCCGTACATGAGAAGAGGATCCTACAGAGGCAGATATGGCGACCCCTC
AAGATCTAGGTATGACGATCGAGGATGGGATTCAAGGCGTGATCAGCGTC
CTCCGTATGGCCGTTCTCCATACGAGGAGCGTGATCGAATTAGAAGGAGG
TATGAGGGGTATGAGGAGGGTCGTGGTTATCCACCGCGGGACTTGGATCG
GGACCAACGTCCGCGGGAGCGTCAGCCTCCAGTGCCAAGAGAATCGGCAG
ATGATTATATATGA
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