Gvermi6986.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6986.t1
Unique NameGvermi6986.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:836277..837274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002129192.1
Preferred namePRKAB2
PFAMsAMPK1_CBM,AMPKBI
Max annot lvl33208|Metazoa
KEGG koko:K07199
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016236,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023052,GO:0031323,GO:0031326,GO:0031588,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0035878,GO:0036211,GO:0042304,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045786,GO:0046890,GO:0048518,GO:0048519,GO:0048523,GO:0048736,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051259,GO:0051291,GO:0051716,GO:0051726,GO:0060173,GO:0060255,GO:0061695,GO:0061919,GO:0062012,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0098590,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
Evalue1.46e-28
EggNOG OGsKOG1616@1|root,KOG1616@2759|Eukaryota,38HM7@33154|Opisthokonta,3BEI5@33208|Metazoa,3CRZR@33213|Bilateria,4856H@7711|Chordata
Descriptionnail development
COG categoryG
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6986Gvermi6986Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 836277..837274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6986.t1Gvermi6986.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 836277..837274 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6986.t1.stop1Gvermi6986.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 836277..836279 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6986.t1.CDS1Gvermi6986.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 836277..836802 -
Gvermi6986.t1.CDS2Gvermi6986.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 836961..837274 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6986.t1.exon1Gvermi6986.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 836277..836802 -
Gvermi6986.t1.exon2Gvermi6986.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 836961..837274 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6986.t1.intron1Gvermi6986.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 836803..836960 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6986.t1.start1Gvermi6986.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 837272..837274 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6986.t1 ID=Gvermi6986.t1|Name=Gvermi6986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
MGGTASRASELSTSDDSQNSSDANLSQEPYSSLDVDDRNNSGTEHIVPIE
FKWSNGGYSVYVTGAWDDWSRKTQLSRTHPTEFATVLALPAGTFQYKFIV
DGNWKHNPMDPTARDAHGNLNNVITVTPQPPEYDSNEPLSVDELSRSPVE
SYNYTLLAEEDHTTEAPTLPRILASAPIDRRQRSHMSGTDFVRLNHLFLI
HSESSYGSGQTRTMATERRFKDKRVTTILVTTSGRAPPDSMSEPPTYRRT
RSDPIPIPDASEQTMSESQSLLLDALNNV*
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spliced messenger RNA

>Gvermi6986.t1 ID=Gvermi6986.t1|Name=Gvermi6986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:836277..837274- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGAACAGCATCACGTGCCAGTGAACTTTCGACTTCAGATGACTC
TCAAAACTCTAGTGATGCAAATCTTTCTCAAGAACCATACTCCTCGCTCG
ACGTCGATGACCGGAACAACAGTGGCACCGAGCACATCGTGCCCATCGAG
TTCAAGTGGAGCAATGGCGGCTATTCTGTGTACGTAACCGGCGCGTGGGA
TGATTGGAGCCGCAAAACGCAGCTGAGTAGAACCCATCCAACCGAGTTCG
CTACTGTTTTGGCTCTACCTGCTGGAACGTTCCAATACAAGTTCATTGTC
GATGGTAACTGGAAGCACAATCCCATGGATCCAACTGCTCGCGATGCTCA
TGGGAATCTTAACAATGTAATCACCGTAACCCCACAACCCCCCGAATACG
ATTCCAATGAACCCCTTAGCGTCGACGAGCTCTCCAGGTCGCCAGTGGAA
TCGTACAACTATACTCTGCTGGCCGAGGAAGATCACACTACGGAGGCGCC
GACTCTACCCAGAATACTTGCTAGCGCTCCGATAGACCGCAGACAACGGT
CCCACATGAGCGGTACAGATTTTGTGCGACTGAACCACCTCTTCCTGATC
CACAGCGAGTCCTCTTACGGGTCAGGACAGACCCGGACGATGGCCACCGA
ACGGCGTTTCAAAGACAAAAGGGTCACAACCATTCTAGTGACAACAAGTG
GAAGAGCCCCCCCTGACAGTATGTCGGAGCCACCAACGTACAGGAGGACG
CGTTCAGATCCTATTCCCATCCCCGACGCGTCGGAGCAGACCATGAGCGA
GTCACAATCGCTTCTTCTCGACGCATTAAATAACGTTTGA
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protein sequence of Gvermi6986.t1

>Gvermi6986.t1 ID=Gvermi6986.t1|Name=Gvermi6986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MGGTASRASELSTSDDSQNSSDANLSQEPYSSLDVDDRNNSGTEHIVPIE
FKWSNGGYSVYVTGAWDDWSRKTQLSRTHPTEFATVLALPAGTFQYKFIV
DGNWKHNPMDPTARDAHGNLNNVITVTPQPPEYDSNEPLSVDELSRSPVE
SYNYTLLAEEDHTTEAPTLPRILASAPIDRRQRSHMSGTDFVRLNHLFLI
HSESSYGSGQTRTMATERRFKDKRVTTILVTTSGRAPPDSMSEPPTYRRT
RSDPIPIPDASEQTMSESQSLLLDALNNV*
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mRNA from alignment at ScGOVlb_24229:836277..837274-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6986.t1 ID=Gvermi6986.t1|Name=Gvermi6986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=998bp|location=Sequence derived from alignment at ScGOVlb_24229:836277..837274- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGGAACAGCATCACGTGCCAGTGAACTTTCGACTTCAGATGACTC
TCAAAACTCTAGTGATGCAAATCTTTCTCAAGAACCATACTCCTCGCTCG
ACGTCGATGACCGGAACAACAGTGGCACCGAGCACATCGTGCCCATCGAG
TTCAAGTGGAGCAATGGCGGCTATTCTGTGTACGTAACCGGCGCGTGGGA
TGATTGGAGCCGCAAAACGCAGCTGAGTAGAACCCATCCAACCGAGTTCG
CTACTGTTTTGGCTCTACCTGCTGGAACGTTCCAATACAAGTTCATTGTC
GATGGTAACTGGAAGTAAGGCATTGCAATCGTAGTTCCCGCCGCGTATCA
AAAACACGCCTACCAAACATGCGGCGTGTCTTAAGAACCTGAACCCCGCG
CAACGAACAGATCTCTGACATTTATTCATGTTATTCTTGTCTGCACTGCA
ATCAATGTTTTATTTGTATCAGGCACAATCCCATGGATCCAACTGCTCGC
GATGCTCATGGGAATCTTAACAATGTAATCACCGTAACCCCACAACCCCC
CGAATACGATTCCAATGAACCCCTTAGCGTCGACGAGCTCTCCAGGTCGC
CAGTGGAATCGTACAACTATACTCTGCTGGCCGAGGAAGATCACACTACG
GAGGCGCCGACTCTACCCAGAATACTTGCTAGCGCTCCGATAGACCGCAG
ACAACGGTCCCACATGAGCGGTACAGATTTTGTGCGACTGAACCACCTCT
TCCTGATCCACAGCGAGTCCTCTTACGGGTCAGGACAGACCCGGACGATG
GCCACCGAACGGCGTTTCAAAGACAAAAGGGTCACAACCATTCTAGTGAC
AACAAGTGGAAGAGCCCCCCCTGACAGTATGTCGGAGCCACCAACGTACA
GGAGGACGCGTTCAGATCCTATTCCCATCCCCGACGCGTCGGAGCAGACC
ATGAGCGAGTCACAATCGCTTCTTCTCGACGCATTAAATAACGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:836277..837274-

>Gvermi6986.t1 ID=Gvermi6986.t1|Name=Gvermi6986.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:836277..837274- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGGAACAGCATCACGTGCCAGTGAACTTTCGACTTCAGATGACTC
TCAAAACTCTAGTGATGCAAATCTTTCTCAAGAACCATACTCCTCGCTCG
ACGTCGATGACCGGAACAACAGTGGCACCGAGCACATCGTGCCCATCGAG
TTCAAGTGGAGCAATGGCGGCTATTCTGTGTACGTAACCGGCGCGTGGGA
TGATTGGAGCCGCAAAACGCAGCTGAGTAGAACCCATCCAACCGAGTTCG
CTACTGTTTTGGCTCTACCTGCTGGAACGTTCCAATACAAGTTCATTGTC
GATGGTAACTGGAAGCACAATCCCATGGATCCAACTGCTCGCGATGCTCA
TGGGAATCTTAACAATGTAATCACCGTAACCCCACAACCCCCCGAATACG
ATTCCAATGAACCCCTTAGCGTCGACGAGCTCTCCAGGTCGCCAGTGGAA
TCGTACAACTATACTCTGCTGGCCGAGGAAGATCACACTACGGAGGCGCC
GACTCTACCCAGAATACTTGCTAGCGCTCCGATAGACCGCAGACAACGGT
CCCACATGAGCGGTACAGATTTTGTGCGACTGAACCACCTCTTCCTGATC
CACAGCGAGTCCTCTTACGGGTCAGGACAGACCCGGACGATGGCCACCGA
ACGGCGTTTCAAAGACAAAAGGGTCACAACCATTCTAGTGACAACAAGTG
GAAGAGCCCCCCCTGACAGTATGTCGGAGCCACCAACGTACAGGAGGACG
CGTTCAGATCCTATTCCCATCCCCGACGCGTCGGAGCAGACCATGAGCGA
GTCACAATCGCTTCTTCTCGACGCATTAAATAACGTTTGA
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