Gvermi6984.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6984.t1
Unique NameGvermi6984.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length592
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:831851..833626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog329726.AM1_4318
PFAMsPkinase
Max annot lvl1117|Cyanobacteria
KEGG koko:K00870
Evalue5.11e-96
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,1G28A@1117|Cyanobacteria
EC2.7.1.37
DescriptionPFAM Protein kinase domain
COG categoryKLT
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6984Gvermi6984Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 831851..833626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6984.t1.stop1Gvermi6984.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 831851..831853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6984.t1.CDS1Gvermi6984.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 831851..833626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6984.t1.exon1Gvermi6984.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 831851..833626 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6984.t1.start1Gvermi6984.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 833624..833626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6984.t1Gvermi6984.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 831851..833626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6984.t1 ID=Gvermi6984.t1|Name=Gvermi6984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=592bp
MGFSKKEGESSRREKKSSCIFDSTKIWNDAVLAFLVPIPVSRYPSFYSSR
KCVYRQPQVLKRPRSFRYRCLRPSSSFKRDDVVNDYRIIDVIGRGNTGLT
YEAVATKGPYRSMRLALKALTVRSLTTWKRLDLFQREARTLKSLSHPSIP
EYVDFFEYETDADTAYILVQKKAQGTSLQTLIDEGYRFSTEQVKRTFVKL
LEVLSYLASLNPPVLHCDIKPANIIVDLKNSEVLLSLVDFGGVRTGITSP
GSTVVGTYGFMAPEQFTGLADVRSDLYAVAATILCMLTTQPPSALPQKRL
KIDLSAVIPKRERDKLGNIYSVMAKLLEPAPEDRFDSPEEALAALNGVVT
NREVSTHSVPNLLKANSSLSPEDVASLQKALATMNSNEPRSNALQMLSLL
TGRRIRRRKPAGSRISLERDRNNRLLIISIPPKGLSTEALSRGAFTVAWT
SFTAFWTFGVITGGAPIVLSLFSLPFWAAGYRFARSTANEITGATDILIS
FGSGDRKVFYFGMSSKSALGKGLFIEGDSRDLDGASLETEMYVNGQPVDE
LVLKEGTRRHAFGDALDPVEQEWLRDEINDFIGSQNGGPFR*
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spliced messenger RNA

>Gvermi6984.t1 ID=Gvermi6984.t1|Name=Gvermi6984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1776bp|location=Sequence derived from alignment at ScGOVlb_24229:831851..833626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTTCAGCAAGAAAGAGGGTGAGTCATCTCGAAGGGAGAAAAAAAG
CTCGTGCATCTTCGATTCAACCAAGATATGGAACGACGCGGTTCTAGCCT
TCCTGGTACCTATACCAGTTTCTCGTTATCCATCCTTCTACTCATCTAGA
AAATGTGTATATCGCCAGCCGCAAGTGCTAAAGCGGCCGCGAAGCTTTCG
GTATCGTTGTCTGCGCCCATCATCTTCGTTCAAGCGAGATGATGTTGTCA
ACGACTACCGAATCATAGATGTAATCGGACGCGGAAATACGGGTCTTACT
TACGAAGCCGTAGCAACAAAAGGGCCGTATCGTTCTATGCGATTGGCCCT
GAAAGCTCTTACAGTTCGTTCGTTAACGACATGGAAAAGACTTGACCTCT
TTCAAAGAGAGGCCAGGACCCTGAAGTCTCTCTCCCATCCATCGATTCCG
GAGTATGTGGACTTTTTCGAATACGAAACCGATGCCGACACTGCGTATAT
TCTCGTTCAGAAAAAAGCACAGGGAACGTCTCTACAGACTCTCATAGATG
AGGGTTATCGATTCTCAACAGAACAGGTCAAGCGGACCTTTGTCAAGCTT
CTGGAGGTTCTCTCTTATCTGGCATCTCTGAACCCCCCCGTTCTGCACTG
TGATATAAAGCCTGCGAATATTATCGTAGATCTGAAGAATTCTGAAGTTC
TTCTGTCCTTGGTTGATTTTGGTGGGGTGAGAACGGGTATAACATCACCT
GGCTCGACAGTAGTCGGCACTTATGGTTTTATGGCCCCAGAGCAATTTAC
GGGACTCGCGGACGTGCGTAGCGACTTGTATGCAGTAGCTGCTACGATCT
TATGTATGCTAACGACCCAGCCACCGTCTGCTCTTCCTCAAAAACGTCTA
AAGATAGACCTCTCAGCCGTAATTCCGAAAAGGGAGCGAGACAAACTTGG
AAATATTTATTCGGTAATGGCCAAACTCTTAGAACCAGCACCGGAAGATC
GCTTTGACAGTCCAGAAGAGGCTCTTGCAGCATTGAATGGTGTCGTCACC
AATAGAGAGGTTTCAACCCATTCTGTTCCAAATTTACTGAAGGCCAATTC
GTCTCTAAGCCCGGAAGATGTAGCATCTCTCCAAAAAGCATTAGCAACCA
TGAACTCAAATGAACCTAGATCTAATGCATTGCAAATGTTATCATTGCTT
ACCGGACGAAGAATACGACGAAGAAAGCCAGCCGGATCTCGTATATCTTT
AGAGCGCGACCGTAACAACAGATTGCTAATAATCTCAATACCGCCTAAAG
GTTTGTCAACTGAAGCTTTGTCACGGGGAGCCTTCACCGTCGCGTGGACC
AGTTTTACAGCGTTTTGGACATTTGGAGTGATTACAGGAGGAGCGCCGAT
AGTGTTGTCGCTCTTTAGTCTCCCATTTTGGGCTGCTGGTTACCGCTTTG
CTCGGAGCACAGCAAATGAAATCACTGGTGCGACGGATATATTGATTAGC
TTCGGGAGTGGAGACAGAAAAGTTTTCTACTTTGGAATGTCTTCAAAGAG
TGCTCTTGGAAAGGGTTTATTCATCGAAGGGGATTCTCGTGATCTTGATG
GAGCTTCCTTGGAAACAGAAATGTACGTGAATGGCCAGCCTGTTGATGAA
CTGGTATTGAAAGAAGGGACCAGAAGGCACGCATTTGGTGACGCATTGGA
CCCGGTAGAGCAGGAGTGGTTACGTGATGAAATCAATGACTTCATTGGGA
GCCAAAACGGAGGGCCCTTTCGATAG
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protein sequence of Gvermi6984.t1

>Gvermi6984.t1 ID=Gvermi6984.t1|Name=Gvermi6984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=592bp
MGFSKKEGESSRREKKSSCIFDSTKIWNDAVLAFLVPIPVSRYPSFYSSR
KCVYRQPQVLKRPRSFRYRCLRPSSSFKRDDVVNDYRIIDVIGRGNTGLT
YEAVATKGPYRSMRLALKALTVRSLTTWKRLDLFQREARTLKSLSHPSIP
EYVDFFEYETDADTAYILVQKKAQGTSLQTLIDEGYRFSTEQVKRTFVKL
LEVLSYLASLNPPVLHCDIKPANIIVDLKNSEVLLSLVDFGGVRTGITSP
GSTVVGTYGFMAPEQFTGLADVRSDLYAVAATILCMLTTQPPSALPQKRL
KIDLSAVIPKRERDKLGNIYSVMAKLLEPAPEDRFDSPEEALAALNGVVT
NREVSTHSVPNLLKANSSLSPEDVASLQKALATMNSNEPRSNALQMLSLL
TGRRIRRRKPAGSRISLERDRNNRLLIISIPPKGLSTEALSRGAFTVAWT
SFTAFWTFGVITGGAPIVLSLFSLPFWAAGYRFARSTANEITGATDILIS
FGSGDRKVFYFGMSSKSALGKGLFIEGDSRDLDGASLETEMYVNGQPVDE
LVLKEGTRRHAFGDALDPVEQEWLRDEINDFIGSQNGGPFR*
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mRNA from alignment at ScGOVlb_24229:831851..833626-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6984.t1 ID=Gvermi6984.t1|Name=Gvermi6984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1776bp|location=Sequence derived from alignment at ScGOVlb_24229:831851..833626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTTCAGCAAGAAAGAGGGTGAGTCATCTCGAAGGGAGAAAAAAAG
CTCGTGCATCTTCGATTCAACCAAGATATGGAACGACGCGGTTCTAGCCT
TCCTGGTACCTATACCAGTTTCTCGTTATCCATCCTTCTACTCATCTAGA
AAATGTGTATATCGCCAGCCGCAAGTGCTAAAGCGGCCGCGAAGCTTTCG
GTATCGTTGTCTGCGCCCATCATCTTCGTTCAAGCGAGATGATGTTGTCA
ACGACTACCGAATCATAGATGTAATCGGACGCGGAAATACGGGTCTTACT
TACGAAGCCGTAGCAACAAAAGGGCCGTATCGTTCTATGCGATTGGCCCT
GAAAGCTCTTACAGTTCGTTCGTTAACGACATGGAAAAGACTTGACCTCT
TTCAAAGAGAGGCCAGGACCCTGAAGTCTCTCTCCCATCCATCGATTCCG
GAGTATGTGGACTTTTTCGAATACGAAACCGATGCCGACACTGCGTATAT
TCTCGTTCAGAAAAAAGCACAGGGAACGTCTCTACAGACTCTCATAGATG
AGGGTTATCGATTCTCAACAGAACAGGTCAAGCGGACCTTTGTCAAGCTT
CTGGAGGTTCTCTCTTATCTGGCATCTCTGAACCCCCCCGTTCTGCACTG
TGATATAAAGCCTGCGAATATTATCGTAGATCTGAAGAATTCTGAAGTTC
TTCTGTCCTTGGTTGATTTTGGTGGGGTGAGAACGGGTATAACATCACCT
GGCTCGACAGTAGTCGGCACTTATGGTTTTATGGCCCCAGAGCAATTTAC
GGGACTCGCGGACGTGCGTAGCGACTTGTATGCAGTAGCTGCTACGATCT
TATGTATGCTAACGACCCAGCCACCGTCTGCTCTTCCTCAAAAACGTCTA
AAGATAGACCTCTCAGCCGTAATTCCGAAAAGGGAGCGAGACAAACTTGG
AAATATTTATTCGGTAATGGCCAAACTCTTAGAACCAGCACCGGAAGATC
GCTTTGACAGTCCAGAAGAGGCTCTTGCAGCATTGAATGGTGTCGTCACC
AATAGAGAGGTTTCAACCCATTCTGTTCCAAATTTACTGAAGGCCAATTC
GTCTCTAAGCCCGGAAGATGTAGCATCTCTCCAAAAAGCATTAGCAACCA
TGAACTCAAATGAACCTAGATCTAATGCATTGCAAATGTTATCATTGCTT
ACCGGACGAAGAATACGACGAAGAAAGCCAGCCGGATCTCGTATATCTTT
AGAGCGCGACCGTAACAACAGATTGCTAATAATCTCAATACCGCCTAAAG
GTTTGTCAACTGAAGCTTTGTCACGGGGAGCCTTCACCGTCGCGTGGACC
AGTTTTACAGCGTTTTGGACATTTGGAGTGATTACAGGAGGAGCGCCGAT
AGTGTTGTCGCTCTTTAGTCTCCCATTTTGGGCTGCTGGTTACCGCTTTG
CTCGGAGCACAGCAAATGAAATCACTGGTGCGACGGATATATTGATTAGC
TTCGGGAGTGGAGACAGAAAAGTTTTCTACTTTGGAATGTCTTCAAAGAG
TGCTCTTGGAAAGGGTTTATTCATCGAAGGGGATTCTCGTGATCTTGATG
GAGCTTCCTTGGAAACAGAAATGTACGTGAATGGCCAGCCTGTTGATGAA
CTGGTATTGAAAGAAGGGACCAGAAGGCACGCATTTGGTGACGCATTGGA
CCCGGTAGAGCAGGAGTGGTTACGTGATGAAATCAATGACTTCATTGGGA
GCCAAAACGGAGGGCCCTTTCGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:831851..833626-

>Gvermi6984.t1 ID=Gvermi6984.t1|Name=Gvermi6984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1776bp|location=Sequence derived from alignment at ScGOVlb_24229:831851..833626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGTTCAGCAAGAAAGAGGGTGAGTCATCTCGAAGGGAGAAAAAAAG
CTCGTGCATCTTCGATTCAACCAAGATATGGAACGACGCGGTTCTAGCCT
TCCTGGTACCTATACCAGTTTCTCGTTATCCATCCTTCTACTCATCTAGA
AAATGTGTATATCGCCAGCCGCAAGTGCTAAAGCGGCCGCGAAGCTTTCG
GTATCGTTGTCTGCGCCCATCATCTTCGTTCAAGCGAGATGATGTTGTCA
ACGACTACCGAATCATAGATGTAATCGGACGCGGAAATACGGGTCTTACT
TACGAAGCCGTAGCAACAAAAGGGCCGTATCGTTCTATGCGATTGGCCCT
GAAAGCTCTTACAGTTCGTTCGTTAACGACATGGAAAAGACTTGACCTCT
TTCAAAGAGAGGCCAGGACCCTGAAGTCTCTCTCCCATCCATCGATTCCG
GAGTATGTGGACTTTTTCGAATACGAAACCGATGCCGACACTGCGTATAT
TCTCGTTCAGAAAAAAGCACAGGGAACGTCTCTACAGACTCTCATAGATG
AGGGTTATCGATTCTCAACAGAACAGGTCAAGCGGACCTTTGTCAAGCTT
CTGGAGGTTCTCTCTTATCTGGCATCTCTGAACCCCCCCGTTCTGCACTG
TGATATAAAGCCTGCGAATATTATCGTAGATCTGAAGAATTCTGAAGTTC
TTCTGTCCTTGGTTGATTTTGGTGGGGTGAGAACGGGTATAACATCACCT
GGCTCGACAGTAGTCGGCACTTATGGTTTTATGGCCCCAGAGCAATTTAC
GGGACTCGCGGACGTGCGTAGCGACTTGTATGCAGTAGCTGCTACGATCT
TATGTATGCTAACGACCCAGCCACCGTCTGCTCTTCCTCAAAAACGTCTA
AAGATAGACCTCTCAGCCGTAATTCCGAAAAGGGAGCGAGACAAACTTGG
AAATATTTATTCGGTAATGGCCAAACTCTTAGAACCAGCACCGGAAGATC
GCTTTGACAGTCCAGAAGAGGCTCTTGCAGCATTGAATGGTGTCGTCACC
AATAGAGAGGTTTCAACCCATTCTGTTCCAAATTTACTGAAGGCCAATTC
GTCTCTAAGCCCGGAAGATGTAGCATCTCTCCAAAAAGCATTAGCAACCA
TGAACTCAAATGAACCTAGATCTAATGCATTGCAAATGTTATCATTGCTT
ACCGGACGAAGAATACGACGAAGAAAGCCAGCCGGATCTCGTATATCTTT
AGAGCGCGACCGTAACAACAGATTGCTAATAATCTCAATACCGCCTAAAG
GTTTGTCAACTGAAGCTTTGTCACGGGGAGCCTTCACCGTCGCGTGGACC
AGTTTTACAGCGTTTTGGACATTTGGAGTGATTACAGGAGGAGCGCCGAT
AGTGTTGTCGCTCTTTAGTCTCCCATTTTGGGCTGCTGGTTACCGCTTTG
CTCGGAGCACAGCAAATGAAATCACTGGTGCGACGGATATATTGATTAGC
TTCGGGAGTGGAGACAGAAAAGTTTTCTACTTTGGAATGTCTTCAAAGAG
TGCTCTTGGAAAGGGTTTATTCATCGAAGGGGATTCTCGTGATCTTGATG
GAGCTTCCTTGGAAACAGAAATGTACGTGAATGGCCAGCCTGTTGATGAA
CTGGTATTGAAAGAAGGGACCAGAAGGCACGCATTTGGTGACGCATTGGA
CCCGGTAGAGCAGGAGTGGTTACGTGATGAAATCAATGACTTCATTGGGA
GCCAAAACGGAGGGCCCTTTCGATAG
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