Gvermi6980.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6980.t1
Unique Name	Gvermi6980.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:805076..806176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMR475CT
PFAMs	GFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00182
KEGG ko	ko:K00010
KEGG Reaction	R01183,R09951
KEGG Pathway	ko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue	1.58e-142
EggNOG OGs	COG0673@1\|root,KOG2741@2759\|Eukaryota
EC	1.1.1.18,1.1.1.369
Description	D-xylose 1-dehydrogenase (NADP ) activity
COG category	V
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6980	Gvermi6980	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 805076..806176 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6980.t1.start1	Gvermi6980.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 805076..805078 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6980.t1.CDS1	Gvermi6980.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 805076..806176 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6980.t1.exon1	Gvermi6980.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 805076..806176 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6980.t1.stop1	Gvermi6980.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 806174..806176 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6980.t1	Gvermi6980.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 805076..806176 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:805076..806176+
coding sequence from alignment at ScGOVlb_24229:805076..806176+

mRNA sequence

>Gvermi6980.t1 ID=Gvermi6980.t1|Name=Gvermi6980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=367bp
MSLLSRAAVAGASLRRAMSTTASPVRVGIIGAGRIGQVHAKAITAMHGAE
VATIADPFEKFGLAAADTFNTKYTPNWEDMLSDDTIDGIVIGSPTPFHAE
QIIKSAEAGKAIMCEKPISNDLATIDKCLDVVEKTNARLLIGFQRRFDAN
FMQVSKQVADGAIGQVRMFQINSRDPAPPPAEYLANSGGIFLDMMSHDFD
QARFCTGAEIEEVFVAGKAFEEAAQQANDLDTVLVMLKMSNGAIGTIGNS
RRCAYGYDQRIEVFGSDGMLSSNNRAPHTVNISNESSVSSPLPYSFFMDR
YALAYSGVMEAFVKMIREGTPPPVTGADGRAPIVAAMAADKSIKESRPVR
LAEVDITDASAQSAQA*

spliced messenger RNA

>Gvermi6980.t1 ID=Gvermi6980.t1|Name=Gvermi6980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at ScGOVlb_24229:805076..806176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTGCTTTCCCGTGCTGCCGTGGCGGGCGCCTCTCTGCGCCGCGC
CATGTCCACAACAGCTTCTCCGGTTCGCGTCGGAATCATAGGCGCTGGTC
GAATCGGTCAAGTTCACGCCAAGGCTATCACCGCCATGCACGGTGCGGAG
GTTGCCACCATCGCCGATCCGTTCGAGAAGTTTGGTCTGGCCGCAGCAGA
CACCTTTAACACAAAATACACCCCCAACTGGGAGGACATGCTTTCAGATG
ATACAATTGATGGCATTGTCATTGGATCGCCCACCCCCTTTCATGCGGAG
CAAATCATCAAGAGTGCCGAAGCCGGTAAGGCCATCATGTGTGAGAAGCC
CATCTCCAACGACCTCGCCACAATTGACAAATGTCTTGATGTCGTCGAGA
AGACAAATGCACGATTGCTCATCGGGTTCCAGCGTCGCTTTGATGCCAAC
TTTATGCAAGTGAGTAAGCAGGTTGCTGACGGAGCCATTGGCCAGGTGCG
AATGTTCCAGATCAATTCTCGGGACCCAGCACCCCCACCAGCCGAATACC
TTGCCAACTCCGGAGGCATCTTCCTTGACATGATGAGCCACGATTTCGAT
CAGGCAAGGTTCTGCACTGGTGCTGAAATTGAGGAAGTGTTTGTCGCGGG
AAAGGCGTTTGAAGAGGCTGCGCAGCAGGCAAATGATTTGGATACTGTGC
TCGTCATGCTCAAGATGTCCAACGGGGCTATTGGCACCATTGGCAATTCT
CGTCGATGCGCTTACGGATATGATCAACGCATCGAGGTGTTCGGCAGTGA
CGGAATGCTCTCCAGCAATAATAGAGCCCCTCATACCGTCAACATCAGTA
ACGAAAGCTCGGTTTCGTCCCCCCTTCCTTACTCATTTTTCATGGACAGA
TATGCTCTCGCCTATTCAGGCGTCATGGAGGCATTTGTCAAAATGATCCG
TGAAGGTACACCGCCTCCTGTTACGGGTGCTGATGGTCGAGCACCTATTG
TCGCCGCAATGGCTGCCGACAAATCCATCAAGGAGAGCCGCCCGGTTCGT
CTGGCAGAAGTGGATATCACAGATGCATCTGCTCAGTCAGCACAAGCCTA
G

protein sequence of Gvermi6980.t1

>Gvermi6980.t1 ID=Gvermi6980.t1|Name=Gvermi6980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=367bp
MSLLSRAAVAGASLRRAMSTTASPVRVGIIGAGRIGQVHAKAITAMHGAE
VATIADPFEKFGLAAADTFNTKYTPNWEDMLSDDTIDGIVIGSPTPFHAE
QIIKSAEAGKAIMCEKPISNDLATIDKCLDVVEKTNARLLIGFQRRFDAN
FMQVSKQVADGAIGQVRMFQINSRDPAPPPAEYLANSGGIFLDMMSHDFD
QARFCTGAEIEEVFVAGKAFEEAAQQANDLDTVLVMLKMSNGAIGTIGNS
RRCAYGYDQRIEVFGSDGMLSSNNRAPHTVNISNESSVSSPLPYSFFMDR
YALAYSGVMEAFVKMIREGTPPPVTGADGRAPIVAAMAADKSIKESRPVR
LAEVDITDASAQSAQA*

mRNA from alignment at ScGOVlb_24229:805076..806176+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6980.t1 ID=Gvermi6980.t1|Name=Gvermi6980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at ScGOVlb_24229:805076..806176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTGCTTTCCCGTGCTGCCGTGGCGGGCGCCTCTCTGCGCCGCGC
CATGTCCACAACAGCTTCTCCGGTTCGCGTCGGAATCATAGGCGCTGGTC
GAATCGGTCAAGTTCACGCCAAGGCTATCACCGCCATGCACGGTGCGGAG
GTTGCCACCATCGCCGATCCGTTCGAGAAGTTTGGTCTGGCCGCAGCAGA
CACCTTTAACACAAAATACACCCCCAACTGGGAGGACATGCTTTCAGATG
ATACAATTGATGGCATTGTCATTGGATCGCCCACCCCCTTTCATGCGGAG
CAAATCATCAAGAGTGCCGAAGCCGGTAAGGCCATCATGTGTGAGAAGCC
CATCTCCAACGACCTCGCCACAATTGACAAATGTCTTGATGTCGTCGAGA
AGACAAATGCACGATTGCTCATCGGGTTCCAGCGTCGCTTTGATGCCAAC
TTTATGCAAGTGAGTAAGCAGGTTGCTGACGGAGCCATTGGCCAGGTGCG
AATGTTCCAGATCAATTCTCGGGACCCAGCACCCCCACCAGCCGAATACC
TTGCCAACTCCGGAGGCATCTTCCTTGACATGATGAGCCACGATTTCGAT
CAGGCAAGGTTCTGCACTGGTGCTGAAATTGAGGAAGTGTTTGTCGCGGG
AAAGGCGTTTGAAGAGGCTGCGCAGCAGGCAAATGATTTGGATACTGTGC
TCGTCATGCTCAAGATGTCCAACGGGGCTATTGGCACCATTGGCAATTCT
CGTCGATGCGCTTACGGATATGATCAACGCATCGAGGTGTTCGGCAGTGA
CGGAATGCTCTCCAGCAATAATAGAGCCCCTCATACCGTCAACATCAGTA
ACGAAAGCTCGGTTTCGTCCCCCCTTCCTTACTCATTTTTCATGGACAGA
TATGCTCTCGCCTATTCAGGCGTCATGGAGGCATTTGTCAAAATGATCCG
TGAAGGTACACCGCCTCCTGTTACGGGTGCTGATGGTCGAGCACCTATTG
TCGCCGCAATGGCTGCCGACAAATCCATCAAGGAGAGCCGCCCGGTTCGT
CTGGCAGAAGTGGATATCACAGATGCATCTGCTCAGTCAGCACAAGCCTA
G

Coding sequence (CDS) from alignment at ScGOVlb_24229:805076..806176+

>Gvermi6980.t1 ID=Gvermi6980.t1|Name=Gvermi6980.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1101bp|location=Sequence derived from alignment at ScGOVlb_24229:805076..806176+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTGCTTTCCCGTGCTGCCGTGGCGGGCGCCTCTCTGCGCCGCGC
CATGTCCACAACAGCTTCTCCGGTTCGCGTCGGAATCATAGGCGCTGGTC
GAATCGGTCAAGTTCACGCCAAGGCTATCACCGCCATGCACGGTGCGGAG
GTTGCCACCATCGCCGATCCGTTCGAGAAGTTTGGTCTGGCCGCAGCAGA
CACCTTTAACACAAAATACACCCCCAACTGGGAGGACATGCTTTCAGATG
ATACAATTGATGGCATTGTCATTGGATCGCCCACCCCCTTTCATGCGGAG
CAAATCATCAAGAGTGCCGAAGCCGGTAAGGCCATCATGTGTGAGAAGCC
CATCTCCAACGACCTCGCCACAATTGACAAATGTCTTGATGTCGTCGAGA
AGACAAATGCACGATTGCTCATCGGGTTCCAGCGTCGCTTTGATGCCAAC
TTTATGCAAGTGAGTAAGCAGGTTGCTGACGGAGCCATTGGCCAGGTGCG
AATGTTCCAGATCAATTCTCGGGACCCAGCACCCCCACCAGCCGAATACC
TTGCCAACTCCGGAGGCATCTTCCTTGACATGATGAGCCACGATTTCGAT
CAGGCAAGGTTCTGCACTGGTGCTGAAATTGAGGAAGTGTTTGTCGCGGG
AAAGGCGTTTGAAGAGGCTGCGCAGCAGGCAAATGATTTGGATACTGTGC
TCGTCATGCTCAAGATGTCCAACGGGGCTATTGGCACCATTGGCAATTCT
CGTCGATGCGCTTACGGATATGATCAACGCATCGAGGTGTTCGGCAGTGA
CGGAATGCTCTCCAGCAATAATAGAGCCCCTCATACCGTCAACATCAGTA
ACGAAAGCTCGGTTTCGTCCCCCCTTCCTTACTCATTTTTCATGGACAGA
TATGCTCTCGCCTATTCAGGCGTCATGGAGGCATTTGTCAAAATGATCCG
TGAAGGTACACCGCCTCCTGTTACGGGTGCTGATGGTCGAGCACCTATTG
TCGCCGCAATGGCTGCCGACAAATCCATCAAGGAGAGCCGCCCGGTTCGT
CTGGCAGAAGTGGATATCACAGATGCATCTGCTCAGTCAGCACAAGCCTA
G