Gvermi6977.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6977.t1
Unique NameGvermi6977.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length446
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:798132..799469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog555079.Toce_1017
Preferred nameFbpA
PFAMsDUF814,FbpA
Max annot lvl186801|Clostridia
Evalue0.000704
EggNOG OGsCOG1293@1|root,COG1293@2|Bacteria,1TQ8A@1239|Firmicutes,248RK@186801|Clostridia,42F75@68295|Thermoanaerobacterales
DescriptionFibronectin-binding A domain protein
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6977Gvermi6977Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 798132..799469 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6977.t1.stop1Gvermi6977.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 798132..798134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6977.t1.CDS1Gvermi6977.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 798132..799469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6977.t1.exon1Gvermi6977.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 798132..799469 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6977.t1.start1Gvermi6977.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 799467..799469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6977.t1Gvermi6977.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 798132..799469 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6977.t1 ID=Gvermi6977.t1|Name=Gvermi6977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=446bp
MRSVLSCQGFQIYVGETDDENASLCRHAFPDDIWVHLSERASPHAIVSIG
DLKLLPSQEDRCRRSRDGRKELDLSHTIYEAALLVKFFSDAREEEDTSAV
YARVDSLLSHETNKGSEGAVYDILAGCSSHYDDELADLPGRVITTRMPHF
YRVEYDEHRVMQLLARSERSGTVANLDREFSAWRETMLRREAASRRDWYM
RRSYGEQIFQDDSEDDSEEENEDFANIETMEQNGEHHDHDDADDMSVEQR
AMGISDSDEGHICEVDEHKHLVIKLKEEINEEAQPTEKVEVQRVVEMKTD
GAEHVSKDDSCTKLLSDKEGQTSSRELSYGHNAPDGIKDPKATAVNEIDD
VNYLEPRGGEIESTKVVADNGVSERTVNENKNDMESSRNMNAGREKRLGA
NSNEECSNMARVLETKGGDNQTDKDERTGEVFEKRMLDGANNKSS*
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spliced messenger RNA

>Gvermi6977.t1 ID=Gvermi6977.t1|Name=Gvermi6977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at ScGOVlb_24229:798132..799469- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAGCGTTCTTTCTTGTCAGGGCTTCCAAATATATGTCGGCGAAAC
TGATGATGAGAATGCCTCTCTCTGTCGCCACGCATTTCCTGATGACATAT
GGGTGCATTTGAGCGAGCGTGCGTCTCCACATGCCATTGTATCCATTGGC
GATCTCAAACTTCTCCCGAGCCAGGAAGACCGTTGCAGAAGATCTAGAGA
TGGCCGAAAAGAACTTGATCTGTCTCACACCATCTACGAGGCTGCGCTGC
TCGTCAAATTTTTCTCAGACGCTCGCGAAGAAGAGGACACCAGTGCTGTG
TATGCTCGAGTTGACTCTTTACTTTCTCATGAGACAAACAAAGGCTCTGA
AGGTGCTGTGTATGATATTTTGGCCGGCTGCAGCAGCCACTACGATGATG
AACTGGCCGACCTGCCTGGCAGAGTAATAACGACCCGAATGCCCCATTTT
TACCGCGTAGAGTATGATGAGCACAGGGTGATGCAATTGCTTGCAAGGTC
GGAAAGGTCCGGTACCGTTGCCAACTTAGACCGAGAGTTTTCTGCCTGGA
GAGAAACAATGCTTCGCCGAGAAGCTGCAAGCCGGCGAGACTGGTACATG
AGAAGATCATACGGAGAACAGATCTTTCAAGACGATTCTGAAGACGACAG
CGAAGAAGAAAATGAAGACTTTGCGAATATTGAAACGATGGAGCAAAATG
GAGAGCACCACGATCACGACGATGCGGATGACATGAGCGTGGAACAGAGA
GCTATGGGAATTTCAGATTCCGATGAAGGTCACATTTGCGAGGTTGACGA
ACACAAACACTTGGTGATTAAGTTGAAGGAGGAGATAAACGAGGAAGCTC
AACCGACAGAAAAGGTCGAAGTCCAGCGCGTTGTAGAGATGAAGACAGAT
GGTGCAGAACACGTTTCAAAAGACGATTCATGTACAAAACTTTTAAGCGA
CAAAGAAGGCCAAACATCTAGCAGAGAACTAAGCTATGGCCACAATGCAC
CCGACGGTATCAAAGATCCGAAAGCCACGGCTGTTAACGAGATCGACGAC
GTCAACTATCTTGAGCCAAGGGGGGGGGAAATCGAGTCCACTAAAGTTGT
TGCCGACAATGGAGTGAGCGAAAGAACAGTGAATGAAAATAAGAATGATA
TGGAAAGCTCACGCAACATGAACGCTGGACGAGAGAAACGGCTGGGTGCG
AATTCCAACGAGGAATGCAGCAACATGGCTAGAGTACTTGAAACAAAGGG
CGGTGATAATCAAACAGATAAGGACGAGAGAACTGGGGAAGTTTTCGAAA
AGAGAATGTTGGATGGGGCCAACAACAAATCTTCTTAG
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protein sequence of Gvermi6977.t1

>Gvermi6977.t1 ID=Gvermi6977.t1|Name=Gvermi6977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=446bp
MRSVLSCQGFQIYVGETDDENASLCRHAFPDDIWVHLSERASPHAIVSIG
DLKLLPSQEDRCRRSRDGRKELDLSHTIYEAALLVKFFSDAREEEDTSAV
YARVDSLLSHETNKGSEGAVYDILAGCSSHYDDELADLPGRVITTRMPHF
YRVEYDEHRVMQLLARSERSGTVANLDREFSAWRETMLRREAASRRDWYM
RRSYGEQIFQDDSEDDSEEENEDFANIETMEQNGEHHDHDDADDMSVEQR
AMGISDSDEGHICEVDEHKHLVIKLKEEINEEAQPTEKVEVQRVVEMKTD
GAEHVSKDDSCTKLLSDKEGQTSSRELSYGHNAPDGIKDPKATAVNEIDD
VNYLEPRGGEIESTKVVADNGVSERTVNENKNDMESSRNMNAGREKRLGA
NSNEECSNMARVLETKGGDNQTDKDERTGEVFEKRMLDGANNKSS*
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mRNA from alignment at ScGOVlb_24229:798132..799469-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6977.t1 ID=Gvermi6977.t1|Name=Gvermi6977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at ScGOVlb_24229:798132..799469- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAAGCGTTCTTTCTTGTCAGGGCTTCCAAATATATGTCGGCGAAAC
TGATGATGAGAATGCCTCTCTCTGTCGCCACGCATTTCCTGATGACATAT
GGGTGCATTTGAGCGAGCGTGCGTCTCCACATGCCATTGTATCCATTGGC
GATCTCAAACTTCTCCCGAGCCAGGAAGACCGTTGCAGAAGATCTAGAGA
TGGCCGAAAAGAACTTGATCTGTCTCACACCATCTACGAGGCTGCGCTGC
TCGTCAAATTTTTCTCAGACGCTCGCGAAGAAGAGGACACCAGTGCTGTG
TATGCTCGAGTTGACTCTTTACTTTCTCATGAGACAAACAAAGGCTCTGA
AGGTGCTGTGTATGATATTTTGGCCGGCTGCAGCAGCCACTACGATGATG
AACTGGCCGACCTGCCTGGCAGAGTAATAACGACCCGAATGCCCCATTTT
TACCGCGTAGAGTATGATGAGCACAGGGTGATGCAATTGCTTGCAAGGTC
GGAAAGGTCCGGTACCGTTGCCAACTTAGACCGAGAGTTTTCTGCCTGGA
GAGAAACAATGCTTCGCCGAGAAGCTGCAAGCCGGCGAGACTGGTACATG
AGAAGATCATACGGAGAACAGATCTTTCAAGACGATTCTGAAGACGACAG
CGAAGAAGAAAATGAAGACTTTGCGAATATTGAAACGATGGAGCAAAATG
GAGAGCACCACGATCACGACGATGCGGATGACATGAGCGTGGAACAGAGA
GCTATGGGAATTTCAGATTCCGATGAAGGTCACATTTGCGAGGTTGACGA
ACACAAACACTTGGTGATTAAGTTGAAGGAGGAGATAAACGAGGAAGCTC
AACCGACAGAAAAGGTCGAAGTCCAGCGCGTTGTAGAGATGAAGACAGAT
GGTGCAGAACACGTTTCAAAAGACGATTCATGTACAAAACTTTTAAGCGA
CAAAGAAGGCCAAACATCTAGCAGAGAACTAAGCTATGGCCACAATGCAC
CCGACGGTATCAAAGATCCGAAAGCCACGGCTGTTAACGAGATCGACGAC
GTCAACTATCTTGAGCCAAGGGGGGGGGAAATCGAGTCCACTAAAGTTGT
TGCCGACAATGGAGTGAGCGAAAGAACAGTGAATGAAAATAAGAATGATA
TGGAAAGCTCACGCAACATGAACGCTGGACGAGAGAAACGGCTGGGTGCG
AATTCCAACGAGGAATGCAGCAACATGGCTAGAGTACTTGAAACAAAGGG
CGGTGATAATCAAACAGATAAGGACGAGAGAACTGGGGAAGTTTTCGAAA
AGAGAATGTTGGATGGGGCCAACAACAAATCTTCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:798132..799469-

>Gvermi6977.t1 ID=Gvermi6977.t1|Name=Gvermi6977.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1338bp|location=Sequence derived from alignment at ScGOVlb_24229:798132..799469- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAAGCGTTCTTTCTTGTCAGGGCTTCCAAATATATGTCGGCGAAAC
TGATGATGAGAATGCCTCTCTCTGTCGCCACGCATTTCCTGATGACATAT
GGGTGCATTTGAGCGAGCGTGCGTCTCCACATGCCATTGTATCCATTGGC
GATCTCAAACTTCTCCCGAGCCAGGAAGACCGTTGCAGAAGATCTAGAGA
TGGCCGAAAAGAACTTGATCTGTCTCACACCATCTACGAGGCTGCGCTGC
TCGTCAAATTTTTCTCAGACGCTCGCGAAGAAGAGGACACCAGTGCTGTG
TATGCTCGAGTTGACTCTTTACTTTCTCATGAGACAAACAAAGGCTCTGA
AGGTGCTGTGTATGATATTTTGGCCGGCTGCAGCAGCCACTACGATGATG
AACTGGCCGACCTGCCTGGCAGAGTAATAACGACCCGAATGCCCCATTTT
TACCGCGTAGAGTATGATGAGCACAGGGTGATGCAATTGCTTGCAAGGTC
GGAAAGGTCCGGTACCGTTGCCAACTTAGACCGAGAGTTTTCTGCCTGGA
GAGAAACAATGCTTCGCCGAGAAGCTGCAAGCCGGCGAGACTGGTACATG
AGAAGATCATACGGAGAACAGATCTTTCAAGACGATTCTGAAGACGACAG
CGAAGAAGAAAATGAAGACTTTGCGAATATTGAAACGATGGAGCAAAATG
GAGAGCACCACGATCACGACGATGCGGATGACATGAGCGTGGAACAGAGA
GCTATGGGAATTTCAGATTCCGATGAAGGTCACATTTGCGAGGTTGACGA
ACACAAACACTTGGTGATTAAGTTGAAGGAGGAGATAAACGAGGAAGCTC
AACCGACAGAAAAGGTCGAAGTCCAGCGCGTTGTAGAGATGAAGACAGAT
GGTGCAGAACACGTTTCAAAAGACGATTCATGTACAAAACTTTTAAGCGA
CAAAGAAGGCCAAACATCTAGCAGAGAACTAAGCTATGGCCACAATGCAC
CCGACGGTATCAAAGATCCGAAAGCCACGGCTGTTAACGAGATCGACGAC
GTCAACTATCTTGAGCCAAGGGGGGGGGAAATCGAGTCCACTAAAGTTGT
TGCCGACAATGGAGTGAGCGAAAGAACAGTGAATGAAAATAAGAATGATA
TGGAAAGCTCACGCAACATGAACGCTGGACGAGAGAAACGGCTGGGTGCG
AATTCCAACGAGGAATGCAGCAACATGGCTAGAGTACTTGAAACAAAGGG
CGGTGATAATCAAACAGATAAGGACGAGAGAACTGGGGAAGTTTTCGAAA
AGAGAATGTTGGATGGGGCCAACAACAAATCTTCTTAG
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