Gvermi6973.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6973.t1
Unique NameGvermi6973.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:788599..789372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28377.ENSACAP00000005617
Preferred nameRAB2A
PFAMsRas
Max annot lvl33208|Metazoa
KEGG koko:K07877
KEGG Pathwayko04152,map04152
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0006464,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006996,GO:0007030,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0030424,GO:0031090,GO:0031594,GO:0031982,GO:0031984,GO:0032482,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033267,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0046907,GO:0048193,GO:0048471,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061175,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:0097458,GO:0098588,GO:0098791,GO:0098793,GO:0098794,GO:0098827,GO:0098975,GO:0099175,GO:0120025,GO:0120038,GO:0150034,GO:1901265,GO:1901363,GO:1901564
Evalue1.78e-104
EggNOG OGsCOG1100@1|root,KOG0098@2759|Eukaryota,38D6D@33154|Opisthokonta,3BB4T@33208|Metazoa,3CV5J@33213|Bilateria,4818Y@7711|Chordata,48WVN@7742|Vertebrata
DescriptionGDP binding
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6973Gvermi6973Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 788599..789372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6973.t1Gvermi6973.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 788599..789372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6973.t1.start1Gvermi6973.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 788599..788601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6973.t1.CDS1Gvermi6973.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 788599..788672 +
Gvermi6973.t1.CDS2Gvermi6973.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 788814..789372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6973.t1.exon1Gvermi6973.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 788599..788672 +
Gvermi6973.t1.exon2Gvermi6973.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 788814..789372 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6973.t1.intron1Gvermi6973.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 788673..788813 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6973.t1.stop1Gvermi6973.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 789370..789372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6973.t1 ID=Gvermi6973.t1|Name=Gvermi6973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MTSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVT
VEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILS
WLQDATAHSSSDMTIILVGNKADLEHRREVAKEDGEAFAKEHGLLFLETS
AKNNTNVEEAFLTTAATIYEKVKAGDLDLSSERHGVKVGASNNAISLLDD
AATESKPGCC*
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spliced messenger RNA

>Gvermi6973.t1 ID=Gvermi6973.t1|Name=Gvermi6973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_24229:788599..789372+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCGTATGCGTACTTGTTCAAGTACATCATCATCGGCGACACGGG
AGTCGGTAAGAGCTGTCTGTTATTGCAGTTCACAGATCGCCGATTTACGC
CAATACATGACCTGACCATCGGTGTGGAGTTTGGAGCCAGAATTGTCACA
GTGGAGGACAAACAGCTCAAGCTTCAAATATGGGACACGGCCGGGCAAGA
ATCGTTCCGGAGCATCACGCGCAGCTACTACCGCGGCGCAGCCGGCGCCC
TGCTTGTATACGACATCACAAGAAAAGAAACGTTTGATCACATACTGAGC
TGGCTGCAAGATGCAACAGCTCATTCCAGCTCGGACATGACAATTATTCT
GGTGGGCAACAAGGCTGATTTGGAGCATCGACGAGAGGTGGCCAAGGAAG
ACGGCGAAGCATTTGCGAAAGAGCACGGGCTTCTGTTCCTCGAGACCAGC
GCGAAGAACAACACCAACGTTGAGGAGGCATTCCTCACCACGGCGGCTAC
AATATACGAGAAGGTGAAGGCTGGGGACTTGGATTTGTCTAGTGAAAGGC
ACGGCGTCAAAGTCGGGGCCTCGAACAATGCCATCAGCTTGCTGGACGAC
GCTGCCACAGAATCAAAGCCGGGGTGCTGTTGA
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protein sequence of Gvermi6973.t1

>Gvermi6973.t1 ID=Gvermi6973.t1|Name=Gvermi6973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MTSYAYLFKYIIIGDTGVGKSCLLLQFTDRRFTPIHDLTIGVEFGARIVT
VEDKQLKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRKETFDHILS
WLQDATAHSSSDMTIILVGNKADLEHRREVAKEDGEAFAKEHGLLFLETS
AKNNTNVEEAFLTTAATIYEKVKAGDLDLSSERHGVKVGASNNAISLLDD
AATESKPGCC*
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mRNA from alignment at ScGOVlb_24229:788599..789372+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6973.t1 ID=Gvermi6973.t1|Name=Gvermi6973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_24229:788599..789372+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCGTATGCGTACTTGTTCAAGTACATCATCATCGGCGACACGGG
AGTCGGTAAGAGCTGTCTGTTATTGTACGCAACCTTCACTCCGTTCACCG
TTGGGGCGCGCGTAAATGTTCGCGAGACGCATGCTTGTCATAATCATGAT
GTGAATACAGTCTAACCATCCACCGCTTGTTGCTAAAACCCCTCACGCGA
CCGTGCGAACCACAGGCAGTTCACAGATCGCCGATTTACGCCAATACATG
ACCTGACCATCGGTGTGGAGTTTGGAGCCAGAATTGTCACAGTGGAGGAC
AAACAGCTCAAGCTTCAAATATGGGACACGGCCGGGCAAGAATCGTTCCG
GAGCATCACGCGCAGCTACTACCGCGGCGCAGCCGGCGCCCTGCTTGTAT
ACGACATCACAAGAAAAGAAACGTTTGATCACATACTGAGCTGGCTGCAA
GATGCAACAGCTCATTCCAGCTCGGACATGACAATTATTCTGGTGGGCAA
CAAGGCTGATTTGGAGCATCGACGAGAGGTGGCCAAGGAAGACGGCGAAG
CATTTGCGAAAGAGCACGGGCTTCTGTTCCTCGAGACCAGCGCGAAGAAC
AACACCAACGTTGAGGAGGCATTCCTCACCACGGCGGCTACAATATACGA
GAAGGTGAAGGCTGGGGACTTGGATTTGTCTAGTGAAAGGCACGGCGTCA
AAGTCGGGGCCTCGAACAATGCCATCAGCTTGCTGGACGACGCTGCCACA
GAATCAAAGCCGGGGTGCTGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:788599..789372+

>Gvermi6973.t1 ID=Gvermi6973.t1|Name=Gvermi6973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_24229:788599..789372+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCGTATGCGTACTTGTTCAAGTACATCATCATCGGCGACACGGG
AGTCGGTAAGAGCTGTCTGTTATTGCAGTTCACAGATCGCCGATTTACGC
CAATACATGACCTGACCATCGGTGTGGAGTTTGGAGCCAGAATTGTCACA
GTGGAGGACAAACAGCTCAAGCTTCAAATATGGGACACGGCCGGGCAAGA
ATCGTTCCGGAGCATCACGCGCAGCTACTACCGCGGCGCAGCCGGCGCCC
TGCTTGTATACGACATCACAAGAAAAGAAACGTTTGATCACATACTGAGC
TGGCTGCAAGATGCAACAGCTCATTCCAGCTCGGACATGACAATTATTCT
GGTGGGCAACAAGGCTGATTTGGAGCATCGACGAGAGGTGGCCAAGGAAG
ACGGCGAAGCATTTGCGAAAGAGCACGGGCTTCTGTTCCTCGAGACCAGC
GCGAAGAACAACACCAACGTTGAGGAGGCATTCCTCACCACGGCGGCTAC
AATATACGAGAAGGTGAAGGCTGGGGACTTGGATTTGTCTAGTGAAAGGC
ACGGCGTCAAAGTCGGGGCCTCGAACAATGCCATCAGCTTGCTGGACGAC
GCTGCCACAGAATCAAAGCCGGGGTGCTGTTGA
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