Gvermi6969.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6969.t1
Unique Name	Gvermi6969.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	535

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:778795..780399 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.A0A090M6B8
PFAMs	Lipase_GDSL_2
Max annot lvl	2759\|Eukaryota
Evalue	2.21e-35
EggNOG OGs	2C7IT@1\|root,2S8PS@2759\|Eukaryota
Description	GDSL-like Lipase/Acylhydrolase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6969	Gvermi6969	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 778795..780399 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6969.t1.start1	Gvermi6969.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 778795..778797 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6969.t1.CDS1	Gvermi6969.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 778795..780399 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6969.t1.exon1	Gvermi6969.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 778795..780399 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6969.t1.stop1	Gvermi6969.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 780397..780399 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6969.t1	Gvermi6969.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 778795..780399 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:778795..780399+
coding sequence from alignment at ScGOVlb_24229:778795..780399+

mRNA sequence

>Gvermi6969.t1 ID=Gvermi6969.t1|Name=Gvermi6969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=535bp
MRPRSRQSHATARRPPRAPPPQPAAESRTDPNGTIYEESLHYVRVQRIKH
PLDLRPAPAASTTELAYPRPPTPPDSEVGSDSTSSSSSSSSSFHSAHDQF
TPFPAPSSASAPITRGGIDEIDGSTTTASSRTSSRRSRAKMAASVVSKPI
RKSYVGMVAGLASTVGLGQAMFLKATYQSPPDAKGPRSGVERAVRLTETL
SSAEGHVSRIVPAPAAAAVAVERKISEAVRNAVGDATAPIVQVTCASANH
PQEKRQQDGRKRILIIGDSLVSGVGGESSFDDGPSDGPALPRQVARYLSE
MLNIDVQWNAMSLTGGDVRMLKRKIIPMLDRERKRGTIGEISAVVLVTGV
NDWKRISPIRTASKFRQDLAEFIESIRQQVGHECSVFLPAIPGVHHTPRF
HEPLRSIVVFLNDYWDSQKLQLSRTMRKVYFVGQPPNHEWGTNPVQYFST
LDRVHPSEFGYKRWAERIAEHMVTAFKKGVQAAASVTHLASARASAAAVG
AAEQAADVADAATKDITRASAAVAAVAGNSVTHK*

spliced messenger RNA

>Gvermi6969.t1 ID=Gvermi6969.t1|Name=Gvermi6969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at ScGOVlb_24229:778795..780399+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCGCGATCACGCCAGTCGCACGCCACTGCGCGACGCCCGCCCCG
TGCCCCTCCCCCTCAACCCGCCGCGGAGTCGCGCACAGATCCCAACGGCA
CCATCTACGAGGAGTCTCTTCATTACGTGCGCGTGCAACGTATCAAGCAC
CCCTTAGACCTCAGGCCGGCACCCGCGGCTTCCACCACAGAACTTGCTTA
TCCTCGCCCCCCAACCCCCCCCGACTCCGAAGTTGGctctgactctacct
cctcctcttcctcatcgtcctcctcGTTTCACTCCGCCCACGACCAATTT
ACCCCCTTTCCTGCCCCCTCCTCTGCGTCTGCCCCAATCACTCGCGGTGG
CATAGACGAAATCGACGGTTCCACCACAACTGCTTCCTCACGCACTTCTA
GTAGGCGCTCACGAGCAAAGATGGCTGCCTCAGTTGTCTCAAAGCCTATC
AGAAAGAGCTACGTTGGTATGGTCGCCGGTCTTGCCAGTACAGTGGGCCT
AGGACAGGCCATGTTCCTCAAGGCCACCTACCAGTCGCCCCCAGACGCGA
AGGGACCTCGTTCAGGAGTAGAGCGCGCGGTTCGTCTCACCGAAACCTTG
TCCAGCGCTGAAGGGCACGTCTCTCGAATAGTGCCGGCCCCCGCTGCCGC
CGCCGTCGCAGTCGAGCGAAAGATTTCAGAAGCCGTTAGAAACGCTGTTG
GGGACGCTACCGCCCCTATTGTTCAAGTGACCTGCGCGTCGGCTAATCAT
CCTCAAGAAAAACGGCAGCAGGATGGGAGAAAGCGCATTCTTATTATCGG
CGACTCGCTCGTCAGTGGTGTGGGTGGCGAGTCTAGTTTTGACGATGGGC
CTAGTGATGGTCCAGCTCTCCCGAGGCAAGTGGCTCGTTACCTATCTGAA
ATGCTCAACATTGATGTGCAGTGGAATGCCATGAGCCTCACAGGTGGAGA
TGTGCGAATGCTCAAGCGAAAGATAATCCCAATGCTCGATCGTGAGCGGA
AACGTGGAACTATTGGTGAAATTTCGGCCGTCGTACTAGTCACTGGAGTT
AACGACTGGAAACGCATATCCCCCATCCGAACGGCCAGCAAATTCCGTCA
AGATCTTGCCGAATTTATCGAAAGCATTCGCCAACAAGTTGGTCATGAGT
GCTCTGTATTCTTGCCAGCCATCCCAGGCGTGCATCATACCCCGAGATTC
CACGAGCCCCTTCGCTCTATTGTTGTATTCCTTAACGATTATTGGGATTC
ACAAAAGTTGCAGCTGTCACGTACAATGAGGAAGGTTTATTTTGTTGGCC
AGCCGCCGAATCACGAGTGGGGAACCAATCCAGTTCAATATTTTTCCACT
CTTGATCGTGTTCATCCCTCTGAATTCGGCTACAAACGGTGGGCTGAAAG
AATTGCGGAACACATGGTGACGGCTTTCAAAAAGGGTGTCCAAGCTGCCG
CAAGCGTGACACACCTCGCCAGTGCACGCGCCAGTGCAGCTGCCGTTGGT
GCCGCTGAACAAGCGGCGGACGTTGCGGATGCTGCGACGAAAGACATTAC
TCGAGCCTCTGCTGCGGTAGCTGCAGTTGCCGGGAACAGTGTAACACACA
AGTAA

protein sequence of Gvermi6969.t1

>Gvermi6969.t1 ID=Gvermi6969.t1|Name=Gvermi6969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=535bp
MRPRSRQSHATARRPPRAPPPQPAAESRTDPNGTIYEESLHYVRVQRIKH
PLDLRPAPAASTTELAYPRPPTPPDSEVGSDSTSSSSSSSSSFHSAHDQF
TPFPAPSSASAPITRGGIDEIDGSTTTASSRTSSRRSRAKMAASVVSKPI
RKSYVGMVAGLASTVGLGQAMFLKATYQSPPDAKGPRSGVERAVRLTETL
SSAEGHVSRIVPAPAAAAVAVERKISEAVRNAVGDATAPIVQVTCASANH
PQEKRQQDGRKRILIIGDSLVSGVGGESSFDDGPSDGPALPRQVARYLSE
MLNIDVQWNAMSLTGGDVRMLKRKIIPMLDRERKRGTIGEISAVVLVTGV
NDWKRISPIRTASKFRQDLAEFIESIRQQVGHECSVFLPAIPGVHHTPRF
HEPLRSIVVFLNDYWDSQKLQLSRTMRKVYFVGQPPNHEWGTNPVQYFST
LDRVHPSEFGYKRWAERIAEHMVTAFKKGVQAAASVTHLASARASAAAVG
AAEQAADVADAATKDITRASAAVAAVAGNSVTHK*

mRNA from alignment at ScGOVlb_24229:778795..780399+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6969.t1 ID=Gvermi6969.t1|Name=Gvermi6969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at ScGOVlb_24229:778795..780399+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCCGCGATCACGCCAGTCGCACGCCACTGCGCGACGCCCGCCCCG
TGCCCCTCCCCCTCAACCCGCCGCGGAGTCGCGCACAGATCCCAACGGCA
CCATCTACGAGGAGTCTCTTCATTACGTGCGCGTGCAACGTATCAAGCAC
CCCTTAGACCTCAGGCCGGCACCCGCGGCTTCCACCACAGAACTTGCTTA
TCCTCGCCCCCCAACCCCCCCCGACTCCGAAGTTGGctctgactctacct
cctcctcttcctcatcgtcctcctcGTTTCACTCCGCCCACGACCAATTT
ACCCCCTTTCCTGCCCCCTCCTCTGCGTCTGCCCCAATCACTCGCGGTGG
CATAGACGAAATCGACGGTTCCACCACAACTGCTTCCTCACGCACTTCTA
GTAGGCGCTCACGAGCAAAGATGGCTGCCTCAGTTGTCTCAAAGCCTATC
AGAAAGAGCTACGTTGGTATGGTCGCCGGTCTTGCCAGTACAGTGGGCCT
AGGACAGGCCATGTTCCTCAAGGCCACCTACCAGTCGCCCCCAGACGCGA
AGGGACCTCGTTCAGGAGTAGAGCGCGCGGTTCGTCTCACCGAAACCTTG
TCCAGCGCTGAAGGGCACGTCTCTCGAATAGTGCCGGCCCCCGCTGCCGC
CGCCGTCGCAGTCGAGCGAAAGATTTCAGAAGCCGTTAGAAACGCTGTTG
GGGACGCTACCGCCCCTATTGTTCAAGTGACCTGCGCGTCGGCTAATCAT
CCTCAAGAAAAACGGCAGCAGGATGGGAGAAAGCGCATTCTTATTATCGG
CGACTCGCTCGTCAGTGGTGTGGGTGGCGAGTCTAGTTTTGACGATGGGC
CTAGTGATGGTCCAGCTCTCCCGAGGCAAGTGGCTCGTTACCTATCTGAA
ATGCTCAACATTGATGTGCAGTGGAATGCCATGAGCCTCACAGGTGGAGA
TGTGCGAATGCTCAAGCGAAAGATAATCCCAATGCTCGATCGTGAGCGGA
AACGTGGAACTATTGGTGAAATTTCGGCCGTCGTACTAGTCACTGGAGTT
AACGACTGGAAACGCATATCCCCCATCCGAACGGCCAGCAAATTCCGTCA
AGATCTTGCCGAATTTATCGAAAGCATTCGCCAACAAGTTGGTCATGAGT
GCTCTGTATTCTTGCCAGCCATCCCAGGCGTGCATCATACCCCGAGATTC
CACGAGCCCCTTCGCTCTATTGTTGTATTCCTTAACGATTATTGGGATTC
ACAAAAGTTGCAGCTGTCACGTACAATGAGGAAGGTTTATTTTGTTGGCC
AGCCGCCGAATCACGAGTGGGGAACCAATCCAGTTCAATATTTTTCCACT
CTTGATCGTGTTCATCCCTCTGAATTCGGCTACAAACGGTGGGCTGAAAG
AATTGCGGAACACATGGTGACGGCTTTCAAAAAGGGTGTCCAAGCTGCCG
CAAGCGTGACACACCTCGCCAGTGCACGCGCCAGTGCAGCTGCCGTTGGT
GCCGCTGAACAAGCGGCGGACGTTGCGGATGCTGCGACGAAAGACATTAC
TCGAGCCTCTGCTGCGGTAGCTGCAGTTGCCGGGAACAGTGTAACACACA
AGTAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:778795..780399+

>Gvermi6969.t1 ID=Gvermi6969.t1|Name=Gvermi6969.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1605bp|location=Sequence derived from alignment at ScGOVlb_24229:778795..780399+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCCGCGATCACGCCAGTCGCACGCCACTGCGCGACGCCCGCCCCG
TGCCCCTCCCCCTCAACCCGCCGCGGAGTCGCGCACAGATCCCAACGGCA
CCATCTACGAGGAGTCTCTTCATTACGTGCGCGTGCAACGTATCAAGCAC
CCCTTAGACCTCAGGCCGGCACCCGCGGCTTCCACCACAGAACTTGCTTA
TCCTCGCCCCCCAACCCCCCCCGACTCCGAAGTTGGctctgactctacct
cctcctcttcctcatcgtcctcctcGTTTCACTCCGCCCACGACCAATTT
ACCCCCTTTCCTGCCCCCTCCTCTGCGTCTGCCCCAATCACTCGCGGTGG
CATAGACGAAATCGACGGTTCCACCACAACTGCTTCCTCACGCACTTCTA
GTAGGCGCTCACGAGCAAAGATGGCTGCCTCAGTTGTCTCAAAGCCTATC
AGAAAGAGCTACGTTGGTATGGTCGCCGGTCTTGCCAGTACAGTGGGCCT
AGGACAGGCCATGTTCCTCAAGGCCACCTACCAGTCGCCCCCAGACGCGA
AGGGACCTCGTTCAGGAGTAGAGCGCGCGGTTCGTCTCACCGAAACCTTG
TCCAGCGCTGAAGGGCACGTCTCTCGAATAGTGCCGGCCCCCGCTGCCGC
CGCCGTCGCAGTCGAGCGAAAGATTTCAGAAGCCGTTAGAAACGCTGTTG
GGGACGCTACCGCCCCTATTGTTCAAGTGACCTGCGCGTCGGCTAATCAT
CCTCAAGAAAAACGGCAGCAGGATGGGAGAAAGCGCATTCTTATTATCGG
CGACTCGCTCGTCAGTGGTGTGGGTGGCGAGTCTAGTTTTGACGATGGGC
CTAGTGATGGTCCAGCTCTCCCGAGGCAAGTGGCTCGTTACCTATCTGAA
ATGCTCAACATTGATGTGCAGTGGAATGCCATGAGCCTCACAGGTGGAGA
TGTGCGAATGCTCAAGCGAAAGATAATCCCAATGCTCGATCGTGAGCGGA
AACGTGGAACTATTGGTGAAATTTCGGCCGTCGTACTAGTCACTGGAGTT
AACGACTGGAAACGCATATCCCCCATCCGAACGGCCAGCAAATTCCGTCA
AGATCTTGCCGAATTTATCGAAAGCATTCGCCAACAAGTTGGTCATGAGT
GCTCTGTATTCTTGCCAGCCATCCCAGGCGTGCATCATACCCCGAGATTC
CACGAGCCCCTTCGCTCTATTGTTGTATTCCTTAACGATTATTGGGATTC
ACAAAAGTTGCAGCTGTCACGTACAATGAGGAAGGTTTATTTTGTTGGCC
AGCCGCCGAATCACGAGTGGGGAACCAATCCAGTTCAATATTTTTCCACT
CTTGATCGTGTTCATCCCTCTGAATTCGGCTACAAACGGTGGGCTGAAAG
AATTGCGGAACACATGGTGACGGCTTTCAAAAAGGGTGTCCAAGCTGCCG
CAAGCGTGACACACCTCGCCAGTGCACGCGCCAGTGCAGCTGCCGTTGGT
GCCGCTGAACAAGCGGCGGACGTTGCGGATGCTGCGACGAAAGACATTAC
TCGAGCCTCTGCTGCGGTAGCTGCAGTTGCCGGGAACAGTGTAACACACA
AGTAA