Gvermi6968.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6968.t1
Unique Name	Gvermi6968.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:776917..777990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703162.1
Preferred name	AMT
PFAMs	GCV_T,GCV_T_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00022,RC00069,RC00183,RC00360,RC02834
KEGG ko	ko:K00605,ko:K05359
KEGG Reaction	R00691,R01221,R01373,R02300,R04125
KEGG Pathway	ko00260,ko00400,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00400,map00630,map00670,map01100,map01110,map01130,map01200,map01230
KEGG Module	M00024,M00532
GOs	GO:0001505,GO:0003674,GO:0003824,GO:0004047,GO:0005488,GO:0005504,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0005840,GO:0005960,GO:0006082,GO:0006520,GO:0006544,GO:0006546,GO:0006730,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008289,GO:0008483,GO:0009056,GO:0009063,GO:0009069,GO:0009071,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016054,GO:0016740,GO:0016741,GO:0016769,GO:0017144,GO:0019464,GO:0019752,GO:0019866,GO:0022626,GO:0031090,GO:0031405,GO:0031406,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0032259,GO:0032991,GO:0033293,GO:0036094,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046395,GO:0046686,GO:0048037,GO:0048046,GO:0050662,GO:0050896,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1901681,GO:1902494,GO:1990204,GO:1990904
Evalue	8.77e-134
EggNOG OGs	COG0404@1\|root,KOG2770@2759\|Eukaryota
EC	2.1.2.10,4.2.1.51,4.2.1.91
Description	aminomethyltransferase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6968	Gvermi6968	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 776917..777990 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6968.t1.start1	Gvermi6968.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 776917..776919 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6968.t1.CDS1	Gvermi6968.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 776917..777990 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6968.t1.exon1	Gvermi6968.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 776917..777990 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6968.t1.stop1	Gvermi6968.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 777988..777990 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6968.t1	Gvermi6968.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 776917..777990 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:776917..777990+
coding sequence from alignment at ScGOVlb_24229:776917..777990+

mRNA sequence

>Gvermi6968.t1 ID=Gvermi6968.t1|Name=Gvermi6968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=358bp
MVPFAGYSMPVQYPDGIKDSHLFVRSSAGLFDVSHMGQIKLHGADRVRFL
EQLVVADVAAIEPTRAQLSVITTPEGGIVDDTIISNLGDSIGMVINGACK
DKDVAHIREHMDAANANGMDVSLEIIEDHELLALQGPKAMAVMSELVPDV
DFVKMPFMSCAPMTVSGIPCHVTRCGYTGEDGFELSIPADKTVELFETLI
GRDDVRPTGLGARDSLRLEAGLCLYGNDIDDTTSPVEAGLTWTIGKRRRE
EGGFLGAETILKHLNEGITRRRMVFVVPKGAPARGGETLLNEDGENVGMV
TSGGFSPTLGMAIGMGYANKPFNKTGTKLQVQVRSRTNPVEVRKSPLVPS
NYYRVPE*

spliced messenger RNA

>Gvermi6968.t1 ID=Gvermi6968.t1|Name=Gvermi6968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_24229:776917..777990+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCTTCGCCGGCTACTCTATGCCCGTGCAATACCCAGACGGCAT
CAAGGATTCGCACCTGTTTGTTCGCTCGTCGGCCGGCCTTTTTGATGTTT
CTCATATGGGTCAGATTAAACTACACGGTGCCGATCGCGTTCGCTTCCTC
GAACAGCTCGTCGTCGCCGACGTAGCCGCCATCGAGCCCACACGCGCACA
GCTCTCTGTTATCACCACCCCGGAAGGCGGCATTGTTGACGATACTATCA
TTTCCAACCTGGGCGATTCCATAGGCATGGTCATCAATGGCGCATGCAAG
GACAAGGACGTTGCGCACATCCGAGAGCACATGGACGCCGCCAACGCCAA
TGGCATGGACGTCAGCCTCGAGATCATCGAAGATCACGAGTTGCTCGCGC
TACAGGGCCCGAAGGCCATGGCGGTCATGTCCGAACTCGTGCCTGATGTC
GACTTTGTCAAGATGCCCTTCATGTCGTGTGCGCCAATGACCGTCAGCGG
CATTCCATGCCACGTAACTCGTTGTGGCTACACAGGCGAGGATGGCTTTG
AGCTGTCTATCCCGGCAGACAAAACGGTAGAATTGTTCGAAACACTGATT
GGTCGCGACGACGTGCGTCCGACCGGACTTGGCGCGCGAGATTCACTGCG
TCTGGAGGCCGGATTATGTTTATATGGAAATGATATTGACGACACCACAT
CTCCCGTAGAGGCTGGGCTCACGTGGACAATTGGTAAGAGAAGAAGAGAG
GAAGGAGGTTTCCTAGGCGCGGAGACTATTCTCAAGCACTTGAATGAGGG
CATTACCCGGCGAAGGATGGTGTTTGTGGTACCTAAGGGGGCGCCTGCTC
GCGGCGGGGAGACGTTGCTGAACGAGGATGGAGAGAACGTTGGGATGGTC
ACTAGTGGTGGCTTTAGCCCGACGTTGGGGATGGCTATCGGCATGGGGTA
TGCGAACAAGCCGTTCAATAAGACCGGGACAAAACTGCAGGTTCAAGTAC
GATCGCGCACGAATCCTGTGGAGGTACGGAAGTCGCCGCTTGTACCGAGC
AATTACTACAGGGTGCCAGAGTAG

protein sequence of Gvermi6968.t1

>Gvermi6968.t1 ID=Gvermi6968.t1|Name=Gvermi6968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=358bp
MVPFAGYSMPVQYPDGIKDSHLFVRSSAGLFDVSHMGQIKLHGADRVRFL
EQLVVADVAAIEPTRAQLSVITTPEGGIVDDTIISNLGDSIGMVINGACK
DKDVAHIREHMDAANANGMDVSLEIIEDHELLALQGPKAMAVMSELVPDV
DFVKMPFMSCAPMTVSGIPCHVTRCGYTGEDGFELSIPADKTVELFETLI
GRDDVRPTGLGARDSLRLEAGLCLYGNDIDDTTSPVEAGLTWTIGKRRRE
EGGFLGAETILKHLNEGITRRRMVFVVPKGAPARGGETLLNEDGENVGMV
TSGGFSPTLGMAIGMGYANKPFNKTGTKLQVQVRSRTNPVEVRKSPLVPS
NYYRVPE*

mRNA from alignment at ScGOVlb_24229:776917..777990+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6968.t1 ID=Gvermi6968.t1|Name=Gvermi6968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_24229:776917..777990+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCCCTTCGCCGGCTACTCTATGCCCGTGCAATACCCAGACGGCAT
CAAGGATTCGCACCTGTTTGTTCGCTCGTCGGCCGGCCTTTTTGATGTTT
CTCATATGGGTCAGATTAAACTACACGGTGCCGATCGCGTTCGCTTCCTC
GAACAGCTCGTCGTCGCCGACGTAGCCGCCATCGAGCCCACACGCGCACA
GCTCTCTGTTATCACCACCCCGGAAGGCGGCATTGTTGACGATACTATCA
TTTCCAACCTGGGCGATTCCATAGGCATGGTCATCAATGGCGCATGCAAG
GACAAGGACGTTGCGCACATCCGAGAGCACATGGACGCCGCCAACGCCAA
TGGCATGGACGTCAGCCTCGAGATCATCGAAGATCACGAGTTGCTCGCGC
TACAGGGCCCGAAGGCCATGGCGGTCATGTCCGAACTCGTGCCTGATGTC
GACTTTGTCAAGATGCCCTTCATGTCGTGTGCGCCAATGACCGTCAGCGG
CATTCCATGCCACGTAACTCGTTGTGGCTACACAGGCGAGGATGGCTTTG
AGCTGTCTATCCCGGCAGACAAAACGGTAGAATTGTTCGAAACACTGATT
GGTCGCGACGACGTGCGTCCGACCGGACTTGGCGCGCGAGATTCACTGCG
TCTGGAGGCCGGATTATGTTTATATGGAAATGATATTGACGACACCACAT
CTCCCGTAGAGGCTGGGCTCACGTGGACAATTGGTAAGAGAAGAAGAGAG
GAAGGAGGTTTCCTAGGCGCGGAGACTATTCTCAAGCACTTGAATGAGGG
CATTACCCGGCGAAGGATGGTGTTTGTGGTACCTAAGGGGGCGCCTGCTC
GCGGCGGGGAGACGTTGCTGAACGAGGATGGAGAGAACGTTGGGATGGTC
ACTAGTGGTGGCTTTAGCCCGACGTTGGGGATGGCTATCGGCATGGGGTA
TGCGAACAAGCCGTTCAATAAGACCGGGACAAAACTGCAGGTTCAAGTAC
GATCGCGCACGAATCCTGTGGAGGTACGGAAGTCGCCGCTTGTACCGAGC
AATTACTACAGGGTGCCAGAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:776917..777990+

>Gvermi6968.t1 ID=Gvermi6968.t1|Name=Gvermi6968.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1074bp|location=Sequence derived from alignment at ScGOVlb_24229:776917..777990+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCCCTTCGCCGGCTACTCTATGCCCGTGCAATACCCAGACGGCAT
CAAGGATTCGCACCTGTTTGTTCGCTCGTCGGCCGGCCTTTTTGATGTTT
CTCATATGGGTCAGATTAAACTACACGGTGCCGATCGCGTTCGCTTCCTC
GAACAGCTCGTCGTCGCCGACGTAGCCGCCATCGAGCCCACACGCGCACA
GCTCTCTGTTATCACCACCCCGGAAGGCGGCATTGTTGACGATACTATCA
TTTCCAACCTGGGCGATTCCATAGGCATGGTCATCAATGGCGCATGCAAG
GACAAGGACGTTGCGCACATCCGAGAGCACATGGACGCCGCCAACGCCAA
TGGCATGGACGTCAGCCTCGAGATCATCGAAGATCACGAGTTGCTCGCGC
TACAGGGCCCGAAGGCCATGGCGGTCATGTCCGAACTCGTGCCTGATGTC
GACTTTGTCAAGATGCCCTTCATGTCGTGTGCGCCAATGACCGTCAGCGG
CATTCCATGCCACGTAACTCGTTGTGGCTACACAGGCGAGGATGGCTTTG
AGCTGTCTATCCCGGCAGACAAAACGGTAGAATTGTTCGAAACACTGATT
GGTCGCGACGACGTGCGTCCGACCGGACTTGGCGCGCGAGATTCACTGCG
TCTGGAGGCCGGATTATGTTTATATGGAAATGATATTGACGACACCACAT
CTCCCGTAGAGGCTGGGCTCACGTGGACAATTGGTAAGAGAAGAAGAGAG
GAAGGAGGTTTCCTAGGCGCGGAGACTATTCTCAAGCACTTGAATGAGGG
CATTACCCGGCGAAGGATGGTGTTTGTGGTACCTAAGGGGGCGCCTGCTC
GCGGCGGGGAGACGTTGCTGAACGAGGATGGAGAGAACGTTGGGATGGTC
ACTAGTGGTGGCTTTAGCCCGACGTTGGGGATGGCTATCGGCATGGGGTA
TGCGAACAAGCCGTTCAATAAGACCGGGACAAAACTGCAGGTTCAAGTAC
GATCGCGCACGAATCCTGTGGAGGTACGGAAGTCGCCGCTTGTACCGAGC
AATTACTACAGGGTGCCAGAGTAG