Gvermi6966.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6966.t1
Unique NameGvermi6966.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:773036..774166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8081.XP_008405874.1
PFAMsS-methyl_trans
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00035
KEGG koko:K00547
KEGG ReactionR00650
KEGG Pathwayko00270,ko01100,ko01110,map00270,map01100,map01110
Evalue2.17e-47
EggNOG OGsCOG0646@1|root,KOG1579@2759|Eukaryota,38BGW@33154|Opisthokonta,3BIZV@33208|Metazoa,3CUSA@33213|Bilateria,488V9@7711|Chordata,49HWK@7742|Vertebrata,4A9DH@7898|Actinopterygii
EC2.1.1.10
DescriptionInvolved in the regulation of homocysteine metabolism
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6966Gvermi6966Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 773036..774166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6966.t1Gvermi6966.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 773036..774166 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6966.t1.stop1Gvermi6966.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 773036..773038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6966.t1.CDS1Gvermi6966.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 773036..773938 -
Gvermi6966.t1.CDS2Gvermi6966.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 774011..774166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6966.t1.exon1Gvermi6966.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 773036..773938 -
Gvermi6966.t1.exon2Gvermi6966.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 774011..774166 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6966.t1.intron1Gvermi6966.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 773939..774010 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6966.t1.start1Gvermi6966.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 774164..774166 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6966.t1 ID=Gvermi6966.t1|Name=Gvermi6966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=353bp
MIKEWYEWLDSEPGPGPVLLDGGLGFMLRERGNNLKKGRLWSGRLLRTNP
RELKDVANEWLESGTDIISTATYQVTIDLLRNDFNLSVDEAKKALSTSWD
VLDSARKEFWEQLSEQQQQNRRYPAIAISCGPYSAILPDINEYSGKYPWI
PIEDIRQFHLSRMQNLKALITKSPADAAARNIICFETIGNTSEAQIIVQI
MEEEEFCQIPYWISFQCRNAFRISCGDHLSQAVKSTLAQCAKTNLVALGI
NCFDVFNLPRLQRTLEQTISNHMSSLGEGQWRVDTVCYPNSGEMWSNGKW
YWRRNKHLSYSEWAELACSTGSKIVGGCCRVGPDYIRALQEERVRLSNKL
KS*
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spliced messenger RNA

>Gvermi6966.t1 ID=Gvermi6966.t1|Name=Gvermi6966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at ScGOVlb_24229:773036..774166- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAAAGAATGGTACGAGTGGCTGGACTCTGAGCCTGGACCTGGACC
TGTTCTTCTAGATGGCGGTCTGGGATTTATGCTACGTGAAAGAGGTAATA
ATCTCAAAAAGGGTAGGCTATGGAGTGGCAGACTTCTCAGGACAAATCCG
AGGGAGCTTAAAGATGTTGCAAATGAATGGCTCGAGAGTGGAACAGATAT
CATTTCGACGGCGACTTACCAGGTAACTATTGACCTGCTTCGAAATGATT
TTAACCTCAGTGTGGATGAAGCGAAGAAAGCGTTGAGCACGTCCTGGGAT
GTGCTTGACAGTGCAAGAAAGGAGTTCTGGGAACAGCTATCAGAACAACA
ACAACAGAATCGGAGGTATCCAGCCATAGCTATTTCTTGCGGTCCCTACA
GCGCCATCTTGCCGGATATCAATGAGTATTCTGGGAAATACCCTTGGATT
CCGATCGAAGATATTCGACAGTTCCATCTGAGTCGCATGCAGAATTTAAA
GGCACTCATAACTAAAAGCCCCGCCGATGCTGCTGCGAGGAACATCATCT
GCTTCGAAACCATCGGCAACACATCTGAAGCTCAGATAATTGTGCAAATA
ATGGAAGAAGAAGAGTTCTGCCAGATTCCATACTGGATAAGTTTTCAGTG
CAGAAATGCATTCCGAATCTCATGCGGGGACCATTTATCGCAAGCTGTCA
AGAGTACACTGGCTCAGTGTGCAAAGACAAATTTAGTAGCGCTCGGAATC
AACTGCTTCGACGTCTTCAACCTTCCAAGGTTGCAACGGACCCTAGAACA
AACAATATCAAACCACATGTCATCGCTCGGGGAAGGTCAATGGCGTGTGG
ACACTGTTTGCTATCCAAACAGTGGTGAAATGTGGTCGAATGGTAAATGG
TATTGGAGACGCAACAAGCATTTGAGTTATTCCGAATGGGCAGAATTAGC
CTGTTCTACGGGAAGCAAAATCGTAGGAGGATGTTGTCGTGTCGGACCAG
ACTACATTCGTGCTCTGCAGGAAGAGCGAGTGCGTTTGTCGAATAAGTTG
AAGTCTTGA
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protein sequence of Gvermi6966.t1

>Gvermi6966.t1 ID=Gvermi6966.t1|Name=Gvermi6966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=353bp
MIKEWYEWLDSEPGPGPVLLDGGLGFMLRERGNNLKKGRLWSGRLLRTNP
RELKDVANEWLESGTDIISTATYQVTIDLLRNDFNLSVDEAKKALSTSWD
VLDSARKEFWEQLSEQQQQNRRYPAIAISCGPYSAILPDINEYSGKYPWI
PIEDIRQFHLSRMQNLKALITKSPADAAARNIICFETIGNTSEAQIIVQI
MEEEEFCQIPYWISFQCRNAFRISCGDHLSQAVKSTLAQCAKTNLVALGI
NCFDVFNLPRLQRTLEQTISNHMSSLGEGQWRVDTVCYPNSGEMWSNGKW
YWRRNKHLSYSEWAELACSTGSKIVGGCCRVGPDYIRALQEERVRLSNKL
KS*
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mRNA from alignment at ScGOVlb_24229:773036..774166-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6966.t1 ID=Gvermi6966.t1|Name=Gvermi6966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at ScGOVlb_24229:773036..774166- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCAAAGAATGGTACGAGTGGCTGGACTCTGAGCCTGGACCTGGACC
TGTTCTTCTAGATGGCGGTCTGGGATTTATGCTACGTGAAAGAGGTAATA
ATCTCAAAAAGGGTAGGCTATGGAGTGGCAGACTTCTCAGGACAAATCCG
AGGGAGGTAAGCTTTCTGTGCGACAATTTCACGCCTGGGCAGGGCCGCAG
TGTTTCATTCTGACCATAAATGCCACAGCTTAAAGATGTTGCAAATGAAT
GGCTCGAGAGTGGAACAGATATCATTTCGACGGCGACTTACCAGGTAACT
ATTGACCTGCTTCGAAATGATTTTAACCTCAGTGTGGATGAAGCGAAGAA
AGCGTTGAGCACGTCCTGGGATGTGCTTGACAGTGCAAGAAAGGAGTTCT
GGGAACAGCTATCAGAACAACAACAACAGAATCGGAGGTATCCAGCCATA
GCTATTTCTTGCGGTCCCTACAGCGCCATCTTGCCGGATATCAATGAGTA
TTCTGGGAAATACCCTTGGATTCCGATCGAAGATATTCGACAGTTCCATC
TGAGTCGCATGCAGAATTTAAAGGCACTCATAACTAAAAGCCCCGCCGAT
GCTGCTGCGAGGAACATCATCTGCTTCGAAACCATCGGCAACACATCTGA
AGCTCAGATAATTGTGCAAATAATGGAAGAAGAAGAGTTCTGCCAGATTC
CATACTGGATAAGTTTTCAGTGCAGAAATGCATTCCGAATCTCATGCGGG
GACCATTTATCGCAAGCTGTCAAGAGTACACTGGCTCAGTGTGCAAAGAC
AAATTTAGTAGCGCTCGGAATCAACTGCTTCGACGTCTTCAACCTTCCAA
GGTTGCAACGGACCCTAGAACAAACAATATCAAACCACATGTCATCGCTC
GGGGAAGGTCAATGGCGTGTGGACACTGTTTGCTATCCAAACAGTGGTGA
AATGTGGTCGAATGGTAAATGGTATTGGAGACGCAACAAGCATTTGAGTT
ATTCCGAATGGGCAGAATTAGCCTGTTCTACGGGAAGCAAAATCGTAGGA
GGATGTTGTCGTGTCGGACCAGACTACATTCGTGCTCTGCAGGAAGAGCG
AGTGCGTTTGTCGAATAAGTTGAAGTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:773036..774166-

>Gvermi6966.t1 ID=Gvermi6966.t1|Name=Gvermi6966.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1059bp|location=Sequence derived from alignment at ScGOVlb_24229:773036..774166- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCAAAGAATGGTACGAGTGGCTGGACTCTGAGCCTGGACCTGGACC
TGTTCTTCTAGATGGCGGTCTGGGATTTATGCTACGTGAAAGAGGTAATA
ATCTCAAAAAGGGTAGGCTATGGAGTGGCAGACTTCTCAGGACAAATCCG
AGGGAGCTTAAAGATGTTGCAAATGAATGGCTCGAGAGTGGAACAGATAT
CATTTCGACGGCGACTTACCAGGTAACTATTGACCTGCTTCGAAATGATT
TTAACCTCAGTGTGGATGAAGCGAAGAAAGCGTTGAGCACGTCCTGGGAT
GTGCTTGACAGTGCAAGAAAGGAGTTCTGGGAACAGCTATCAGAACAACA
ACAACAGAATCGGAGGTATCCAGCCATAGCTATTTCTTGCGGTCCCTACA
GCGCCATCTTGCCGGATATCAATGAGTATTCTGGGAAATACCCTTGGATT
CCGATCGAAGATATTCGACAGTTCCATCTGAGTCGCATGCAGAATTTAAA
GGCACTCATAACTAAAAGCCCCGCCGATGCTGCTGCGAGGAACATCATCT
GCTTCGAAACCATCGGCAACACATCTGAAGCTCAGATAATTGTGCAAATA
ATGGAAGAAGAAGAGTTCTGCCAGATTCCATACTGGATAAGTTTTCAGTG
CAGAAATGCATTCCGAATCTCATGCGGGGACCATTTATCGCAAGCTGTCA
AGAGTACACTGGCTCAGTGTGCAAAGACAAATTTAGTAGCGCTCGGAATC
AACTGCTTCGACGTCTTCAACCTTCCAAGGTTGCAACGGACCCTAGAACA
AACAATATCAAACCACATGTCATCGCTCGGGGAAGGTCAATGGCGTGTGG
ACACTGTTTGCTATCCAAACAGTGGTGAAATGTGGTCGAATGGTAAATGG
TATTGGAGACGCAACAAGCATTTGAGTTATTCCGAATGGGCAGAATTAGC
CTGTTCTACGGGAAGCAAAATCGTAGGAGGATGTTGTCGTGTCGGACCAG
ACTACATTCGTGCTCTGCAGGAAGAGCGAGTGCGTTTGTCGAATAAGTTG
AAGTCTTGA
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