Gvermi6964.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6964.t1
Unique NameGvermi6964.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:767742..768179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702926.1
PFAMsCofilin_ADF
Max annot lvl2759|Eukaryota
KEGG koko:K05765
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
Evalue1.29e-33
EggNOG OGsKOG1735@1|root,KOG1735@2759|Eukaryota
Descriptionactin filament depolymerization
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6964Gvermi6964Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 767742..768179 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6964.t1.stop1Gvermi6964.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 767742..767744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6964.t1.CDS1Gvermi6964.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 767742..768179 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6964.t1.exon1Gvermi6964.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 767742..768179 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6964.t1.start1Gvermi6964.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 768177..768179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6964.t1Gvermi6964.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 767742..768179 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6964.t1 ID=Gvermi6964.t1|Name=Gvermi6964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=146bp
MVSGVAVDNKVVSSFKSIMNREHRAAVFKINDTMDEVQLESTAPVADGAA
KSSWESFTKSLPDTDCRYIAYDFVYEHQGANKNRVLFILWSPEESKVRSK
MIYASSQEGVVKHLEGVQRSLQINDKDDLEYSAIAKKLAQHTAGY*
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spliced messenger RNA

>Gvermi6964.t1 ID=Gvermi6964.t1|Name=Gvermi6964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_24229:767742..768179- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCGGAGTTGCAGTTGATAACAAGGTTGTCTCCTCGTTCAAGTC
TATTATGAATCGTGAACACCGAGCCGCGGTGTTCAAGATTAACGACACCA
TGGATGAGGTTCAATTGGAAAGCACCGCCCCTGTTGCCGACGGTGCCGCT
AAATCAAGCTGGGAGTCCTTCACCAAGTCACTCCCGGATACAGACTGCCG
TTACATTGCATACGATTTTGTTTACGAGCACCAGGGTGCTAACAAGAACC
GCGTTCTGTTCATTCTGTGGTCCCCGGAAGAATCTAAGGTGAGATCGAAG
ATGATCTATGCCTCGTCCCAGGAAGGTGTTGTCAAGCATCTCGAAGGAGT
TCAACGCTCCCTTCAAATCAACGATAAGGATGATCTCGAGTATTCGGCGA
TTGCAAAGAAGTTAGCTCAGCACACTGCTGGATATTAG
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protein sequence of Gvermi6964.t1

>Gvermi6964.t1 ID=Gvermi6964.t1|Name=Gvermi6964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MVSGVAVDNKVVSSFKSIMNREHRAAVFKINDTMDEVQLESTAPVADGAA
KSSWESFTKSLPDTDCRYIAYDFVYEHQGANKNRVLFILWSPEESKVRSK
MIYASSQEGVVKHLEGVQRSLQINDKDDLEYSAIAKKLAQHTAGY*
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mRNA from alignment at ScGOVlb_24229:767742..768179-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6964.t1 ID=Gvermi6964.t1|Name=Gvermi6964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_24229:767742..768179- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCCGGAGTTGCAGTTGATAACAAGGTTGTCTCCTCGTTCAAGTC
TATTATGAATCGTGAACACCGAGCCGCGGTGTTCAAGATTAACGACACCA
TGGATGAGGTTCAATTGGAAAGCACCGCCCCTGTTGCCGACGGTGCCGCT
AAATCAAGCTGGGAGTCCTTCACCAAGTCACTCCCGGATACAGACTGCCG
TTACATTGCATACGATTTTGTTTACGAGCACCAGGGTGCTAACAAGAACC
GCGTTCTGTTCATTCTGTGGTCCCCGGAAGAATCTAAGGTGAGATCGAAG
ATGATCTATGCCTCGTCCCAGGAAGGTGTTGTCAAGCATCTCGAAGGAGT
TCAACGCTCCCTTCAAATCAACGATAAGGATGATCTCGAGTATTCGGCGA
TTGCAAAGAAGTTAGCTCAGCACACTGCTGGATATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:767742..768179-

>Gvermi6964.t1 ID=Gvermi6964.t1|Name=Gvermi6964.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=438bp|location=Sequence derived from alignment at ScGOVlb_24229:767742..768179- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCCGGAGTTGCAGTTGATAACAAGGTTGTCTCCTCGTTCAAGTC
TATTATGAATCGTGAACACCGAGCCGCGGTGTTCAAGATTAACGACACCA
TGGATGAGGTTCAATTGGAAAGCACCGCCCCTGTTGCCGACGGTGCCGCT
AAATCAAGCTGGGAGTCCTTCACCAAGTCACTCCCGGATACAGACTGCCG
TTACATTGCATACGATTTTGTTTACGAGCACCAGGGTGCTAACAAGAACC
GCGTTCTGTTCATTCTGTGGTCCCCGGAAGAATCTAAGGTGAGATCGAAG
ATGATCTATGCCTCGTCCCAGGAAGGTGTTGTCAAGCATCTCGAAGGAGT
TCAACGCTCCCTTCAAATCAACGATAAGGATGATCTCGAGTATTCGGCGA
TTGCAAAGAAGTTAGCTCAGCACACTGCTGGATATTAG
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