Gvermi6957.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6957.t1
Unique NameGvermi6957.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length586
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:745940..747772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704614.1
Preferred nameLETM1
PFAMsLETM1
Max annot lvl2759|Eukaryota
KEGG koko:K17800
KEGG TC2.A.97.1
KEGG Pathwayko04139,map04139
GOsGO:0001505,GO:0001666,GO:0003674,GO:0005215,GO:0005432,GO:0005451,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006816,GO:0006836,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007204,GO:0007267,GO:0007268,GO:0007269,GO:0008104,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015075,GO:0015077,GO:0015078,GO:0015079,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015368,GO:0015369,GO:0015386,GO:0015491,GO:0015672,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019725,GO:0019866,GO:0022607,GO:0022804,GO:0022821,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030003,GO:0030004,GO:0030007,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032502,GO:0032543,GO:0032879,GO:0032940,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0034214,GO:0034220,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0035725,GO:0036293,GO:0036294,GO:0042221,GO:0042407,GO:0042592,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045727,GO:0046872,GO:0046873,GO:0046903,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051139,GO:0051171,GO:0051173,GO:0051179,GO:0051204,GO:0051205,GO:0051209,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051282,GO:0051283,GO:0051480,GO:0051560,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055067,GO:0055074,GO:0055075,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0060401,GO:0060402,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0070129,GO:0070131,GO:0070482,GO:0070584,GO:0070585,GO:0070588,GO:0070727,GO:0070838,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0071804,GO:0071805,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098916,GO:0099093,GO:0099516,GO:0099536,GO:0099537,GO:0099643,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1901660,GO:1902600,GO:1990542,GO:2000112
Evalue5.11e-113
EggNOG OGsKOG1043@1|root,KOG1043@2759|Eukaryota
Descriptioncalcium export from the mitochondrion
COG categoryL
BRITEko00000,ko00001,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6957Gvermi6957Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 745940..747772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6957.t1Gvermi6957.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 745940..747772 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6957.t1.start1Gvermi6957.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 745940..745942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6957.t1.CDS1Gvermi6957.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 745940..746296 +
Gvermi6957.t1.CDS2Gvermi6957.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 746372..747772 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6957.t1.exon1Gvermi6957.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 745940..746296 +
Gvermi6957.t1.exon2Gvermi6957.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 746372..747772 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6957.t1.intron1Gvermi6957.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 746297..746371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6957.t1.stop1Gvermi6957.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 747770..747772 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6957.t1 ID=Gvermi6957.t1|Name=Gvermi6957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=586bp
MWAGAKLLAADVRVSSKILRKITAGKQISRRERNFIVKTGVDLARLVPFS
LFLIIPLAEFALPFALRLFPNMLPSQFQDQMKTEENLKKRLKGRLELAKY
LRDVVEEKAKTIKASDGNSELKKVATELTEFLDAIRSGKYVDASEVARFA
RFFNDELTIDGAARPQLVAMCKYMGISHYGHDLFLRFKLRSKLNAIKKDD
MEIMWEGGVESLTDEEVAKACGERGIREIDVRLMRRELSDWLDLSQSKEI
PGSLMIMSRALLYTSHTEDKGKSDSEGLLETLGSLPEDVIMDVKKAADLG
DATTVERLEETLRQAQLIAMESQREAQKEKEDEVKRKKKEAEDVAEKLVA
ELQDVQQSVADETISDKEVMEKVRRQEQELAEAIMGTEKASTESPMKSTE
IEEVVEEVERDEEAEQKERDGIREMLESLEALASDSAVEREREELHNMKM
ELAMAEDSLRGAEGEETSDFRRLKSVISRLEREIERVDTKVGLRMKVLDK
DNDGLMSLAECKGVVKIIAGERDDDVVEETLRRLDADDDGNISREDLKRV
LKEMQYELGSSQESSQKKQSASLENERPSEAGASQ*
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spliced messenger RNA

>Gvermi6957.t1 ID=Gvermi6957.t1|Name=Gvermi6957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at ScGOVlb_24229:745940..747772+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGCTGGAGCCAAGTTGCTAGCGGCTGACGTAAGGGTTAGTTCAAA
GATTCTGCGCAAGATTACTGCCGGCAAGCAGATAAGCCGCCGTGAAAGAA
ACTTCATCGTCAAAACGGGAGTGGATCTCGCCAGGCTCGTCCCATTCTCA
TTGTTTTTGATCATTCCATTGGCGGAATTCGCTCTTCCTTTTGCCTTACG
ATTATTCCCAAACATGTTGCCATCGCAATTTCAAGACCAGATGAAAACCG
AAGAGAACTTGAAGAAGAGGTTGAAAGGTCGTTTAGAGCTTGCCAAATAT
CTCCGAGATGTTGTCGAAGAAAAAGCGAAGACGATTAAGGCATCGGACGG
CAACTCGGAGCTGAAGAAAGTTGCTACAGAATTAACTGAATTTCTGGATG
CCATACGCAGTGGCAAATATGTCGACGCCTCCGAGGTTGCTCGTTTCGCT
CGTTTCTTCAATGACGAGCTAACTATAGATGGAGCGGCTCGTCCGCAGCT
AGTTGCGATGTGCAAGTATATGGGCATTTCTCATTACGGCCACGATCTGT
TTCTTCGATTCAAGCTGCGGTCAAAGCTCAATGCGATTAAAAAGGACGAT
ATGGAAATAATGTGGGAGGGTGGTGTGGAATCGTTAACGGATGAGGAAGT
TGCGAAGGCTTGTGGAGAGAGAGGAATCCGTGAAATTGACGTGCGTCTTA
TGCGTCGAGAACTTAGCGACTGGTTGGATCTCTCACAGAGCAAAGAGATC
CCTGGATCGCTCATGATCATGTCAAGGGCTCTGCTTTACACATCACACAC
CGAGGATAAGGGAAAATCGGATTCCGAAGGGTTGCTGGAAACGTTGGGTT
CGTTGCCAGAAGACGTAATCATGGACGTCAAGAAAGCAGCAGACCTGGGA
GACGCAACTACCGTAGAAAGACTGGAAGAAACGTTGAGACAGGCTCAGTT
GATCGCGATGGAATCACAGCGTGAAGCTCagaaagaaaaggaagacgaag
taaaacgaaagaagaaggaagcagaagaTGTGGCAGAAAAACTTGTAGCC
GAGTTGCAGGATGTTCAGCAGTCCGTTGCAGATGAAACAATATCTGACAA
AGAGGTGATGGAAAAAGTACGACGTCAAGAACAGGAGCTTGCTGAAGCTA
TCATGGGCACGGAGAAGGCTTCAACTGAAAGCCCTATGAAATCGACCGAA
ATTGAGGAGGTTGTCGAAGAAGTAGAAAGGGATGAAGAAGCAGAGCAGAA
AGAGCGTGACGGAATTCGGGAAATGCTCGAGTCTCTCGAAGCATTGGCGT
CAGACTCTGCAGTGGAGCGTGAGAGGGAAGAGTTGCACAACATGAAAATG
GAACTTGCCATGGCTGAGGATTCTTTAAGAGGTGCAGAGGGGGAGGAAAC
CTCAGACTTTAGAAGACTGAAAAGTGTAATATCTAGATTGGAGCGTGAAA
TTGAAAGAGTTGATACGAAGGTTGGTCTAAGAATGAAGGTTCTCGACAAA
GATAACGACGGGCTGATGTCCCTGGCGGAATGCAAAGGTGTTGTCAAAAT
TATAGCTGGGGAGAGAGATGACGACGTAGTCGAGGAGACTTTGAGAAGGT
TGGATGCCGATGATGATGGGAACATATCTCGCGAAGATCTCAAGCGTGTG
CTGAAGGAAATGCAGTATGAGCTTGGCTCTTCACAAGAATCTTCCCAGAA
AAAGCAGAGCGCATCTCTCGAAAATGAACGTCCAAGTGAAGCCGGCGCCA
GTCAATAG
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protein sequence of Gvermi6957.t1

>Gvermi6957.t1 ID=Gvermi6957.t1|Name=Gvermi6957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=586bp
MWAGAKLLAADVRVSSKILRKITAGKQISRRERNFIVKTGVDLARLVPFS
LFLIIPLAEFALPFALRLFPNMLPSQFQDQMKTEENLKKRLKGRLELAKY
LRDVVEEKAKTIKASDGNSELKKVATELTEFLDAIRSGKYVDASEVARFA
RFFNDELTIDGAARPQLVAMCKYMGISHYGHDLFLRFKLRSKLNAIKKDD
MEIMWEGGVESLTDEEVAKACGERGIREIDVRLMRRELSDWLDLSQSKEI
PGSLMIMSRALLYTSHTEDKGKSDSEGLLETLGSLPEDVIMDVKKAADLG
DATTVERLEETLRQAQLIAMESQREAQKEKEDEVKRKKKEAEDVAEKLVA
ELQDVQQSVADETISDKEVMEKVRRQEQELAEAIMGTEKASTESPMKSTE
IEEVVEEVERDEEAEQKERDGIREMLESLEALASDSAVEREREELHNMKM
ELAMAEDSLRGAEGEETSDFRRLKSVISRLEREIERVDTKVGLRMKVLDK
DNDGLMSLAECKGVVKIIAGERDDDVVEETLRRLDADDDGNISREDLKRV
LKEMQYELGSSQESSQKKQSASLENERPSEAGASQ*
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mRNA from alignment at ScGOVlb_24229:745940..747772+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6957.t1 ID=Gvermi6957.t1|Name=Gvermi6957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1833bp|location=Sequence derived from alignment at ScGOVlb_24229:745940..747772+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGCTGGAGCCAAGTTGCTAGCGGCTGACGTAAGGGTTAGTTCAAA
GATTCTGCGCAAGATTACTGCCGGCAAGCAGATAAGCCGCCGTGAAAGAA
ACTTCATCGTCAAAACGGGAGTGGATCTCGCCAGGCTCGTCCCATTCTCA
TTGTTTTTGATCATTCCATTGGCGGAATTCGCTCTTCCTTTTGCCTTACG
ATTATTCCCAAACATGTTGCCATCGCAATTTCAAGACCAGATGAAAACCG
AAGAGAACTTGAAGAAGAGGTTGAAAGGTCGTTTAGAGCTTGCCAAATAT
CTCCGAGATGTTGTCGAAGAAAAAGCGAAGACGATTAAGGCATCGGACGG
CAACTCGGTATGTTTCTCAGTTTTCTTTGAAACGGTGCGATATAGAATCT
AACGTTTTAAGTTCTTTCTGTAACATTCGCAGGAGCTGAAGAAAGTTGCT
ACAGAATTAACTGAATTTCTGGATGCCATACGCAGTGGCAAATATGTCGA
CGCCTCCGAGGTTGCTCGTTTCGCTCGTTTCTTCAATGACGAGCTAACTA
TAGATGGAGCGGCTCGTCCGCAGCTAGTTGCGATGTGCAAGTATATGGGC
ATTTCTCATTACGGCCACGATCTGTTTCTTCGATTCAAGCTGCGGTCAAA
GCTCAATGCGATTAAAAAGGACGATATGGAAATAATGTGGGAGGGTGGTG
TGGAATCGTTAACGGATGAGGAAGTTGCGAAGGCTTGTGGAGAGAGAGGA
ATCCGTGAAATTGACGTGCGTCTTATGCGTCGAGAACTTAGCGACTGGTT
GGATCTCTCACAGAGCAAAGAGATCCCTGGATCGCTCATGATCATGTCAA
GGGCTCTGCTTTACACATCACACACCGAGGATAAGGGAAAATCGGATTCC
GAAGGGTTGCTGGAAACGTTGGGTTCGTTGCCAGAAGACGTAATCATGGA
CGTCAAGAAAGCAGCAGACCTGGGAGACGCAACTACCGTAGAAAGACTGG
AAGAAACGTTGAGACAGGCTCAGTTGATCGCGATGGAATCACAGCGTGAA
GCTCagaaagaaaaggaagacgaagtaaaacgaaagaagaaggaagcaga
agaTGTGGCAGAAAAACTTGTAGCCGAGTTGCAGGATGTTCAGCAGTCCG
TTGCAGATGAAACAATATCTGACAAAGAGGTGATGGAAAAAGTACGACGT
CAAGAACAGGAGCTTGCTGAAGCTATCATGGGCACGGAGAAGGCTTCAAC
TGAAAGCCCTATGAAATCGACCGAAATTGAGGAGGTTGTCGAAGAAGTAG
AAAGGGATGAAGAAGCAGAGCAGAAAGAGCGTGACGGAATTCGGGAAATG
CTCGAGTCTCTCGAAGCATTGGCGTCAGACTCTGCAGTGGAGCGTGAGAG
GGAAGAGTTGCACAACATGAAAATGGAACTTGCCATGGCTGAGGATTCTT
TAAGAGGTGCAGAGGGGGAGGAAACCTCAGACTTTAGAAGACTGAAAAGT
GTAATATCTAGATTGGAGCGTGAAATTGAAAGAGTTGATACGAAGGTTGG
TCTAAGAATGAAGGTTCTCGACAAAGATAACGACGGGCTGATGTCCCTGG
CGGAATGCAAAGGTGTTGTCAAAATTATAGCTGGGGAGAGAGATGACGAC
GTAGTCGAGGAGACTTTGAGAAGGTTGGATGCCGATGATGATGGGAACAT
ATCTCGCGAAGATCTCAAGCGTGTGCTGAAGGAAATGCAGTATGAGCTTG
GCTCTTCACAAGAATCTTCCCAGAAAAAGCAGAGCGCATCTCTCGAAAAT
GAACGTCCAAGTGAAGCCGGCGCCAGTCAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:745940..747772+

>Gvermi6957.t1 ID=Gvermi6957.t1|Name=Gvermi6957.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1758bp|location=Sequence derived from alignment at ScGOVlb_24229:745940..747772+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGCTGGAGCCAAGTTGCTAGCGGCTGACGTAAGGGTTAGTTCAAA
GATTCTGCGCAAGATTACTGCCGGCAAGCAGATAAGCCGCCGTGAAAGAA
ACTTCATCGTCAAAACGGGAGTGGATCTCGCCAGGCTCGTCCCATTCTCA
TTGTTTTTGATCATTCCATTGGCGGAATTCGCTCTTCCTTTTGCCTTACG
ATTATTCCCAAACATGTTGCCATCGCAATTTCAAGACCAGATGAAAACCG
AAGAGAACTTGAAGAAGAGGTTGAAAGGTCGTTTAGAGCTTGCCAAATAT
CTCCGAGATGTTGTCGAAGAAAAAGCGAAGACGATTAAGGCATCGGACGG
CAACTCGGAGCTGAAGAAAGTTGCTACAGAATTAACTGAATTTCTGGATG
CCATACGCAGTGGCAAATATGTCGACGCCTCCGAGGTTGCTCGTTTCGCT
CGTTTCTTCAATGACGAGCTAACTATAGATGGAGCGGCTCGTCCGCAGCT
AGTTGCGATGTGCAAGTATATGGGCATTTCTCATTACGGCCACGATCTGT
TTCTTCGATTCAAGCTGCGGTCAAAGCTCAATGCGATTAAAAAGGACGAT
ATGGAAATAATGTGGGAGGGTGGTGTGGAATCGTTAACGGATGAGGAAGT
TGCGAAGGCTTGTGGAGAGAGAGGAATCCGTGAAATTGACGTGCGTCTTA
TGCGTCGAGAACTTAGCGACTGGTTGGATCTCTCACAGAGCAAAGAGATC
CCTGGATCGCTCATGATCATGTCAAGGGCTCTGCTTTACACATCACACAC
CGAGGATAAGGGAAAATCGGATTCCGAAGGGTTGCTGGAAACGTTGGGTT
CGTTGCCAGAAGACGTAATCATGGACGTCAAGAAAGCAGCAGACCTGGGA
GACGCAACTACCGTAGAAAGACTGGAAGAAACGTTGAGACAGGCTCAGTT
GATCGCGATGGAATCACAGCGTGAAGCTCagaaagaaaaggaagacgaag
taaaacgaaagaagaaggaagcagaagaTGTGGCAGAAAAACTTGTAGCC
GAGTTGCAGGATGTTCAGCAGTCCGTTGCAGATGAAACAATATCTGACAA
AGAGGTGATGGAAAAAGTACGACGTCAAGAACAGGAGCTTGCTGAAGCTA
TCATGGGCACGGAGAAGGCTTCAACTGAAAGCCCTATGAAATCGACCGAA
ATTGAGGAGGTTGTCGAAGAAGTAGAAAGGGATGAAGAAGCAGAGCAGAA
AGAGCGTGACGGAATTCGGGAAATGCTCGAGTCTCTCGAAGCATTGGCGT
CAGACTCTGCAGTGGAGCGTGAGAGGGAAGAGTTGCACAACATGAAAATG
GAACTTGCCATGGCTGAGGATTCTTTAAGAGGTGCAGAGGGGGAGGAAAC
CTCAGACTTTAGAAGACTGAAAAGTGTAATATCTAGATTGGAGCGTGAAA
TTGAAAGAGTTGATACGAAGGTTGGTCTAAGAATGAAGGTTCTCGACAAA
GATAACGACGGGCTGATGTCCCTGGCGGAATGCAAAGGTGTTGTCAAAAT
TATAGCTGGGGAGAGAGATGACGACGTAGTCGAGGAGACTTTGAGAAGGT
TGGATGCCGATGATGATGGGAACATATCTCGCGAAGATCTCAAGCGTGTG
CTGAAGGAAATGCAGTATGAGCTTGGCTCTTCACAAGAATCTTCCCAGAA
AAAGCAGAGCGCATCTCTCGAAAATGAACGTCCAAGTGAAGCCGGCGCCA
GTCAATAG
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