Gvermi6954.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6954.t1
Unique Name	Gvermi6954.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:740132..741529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002595354.1
Preferred name	PSMD12
PFAMs	PCI
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K03035
KEGG Pathway	ko03050,ko05169,map03050,map05169
KEGG Module	M00341
GOs	GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022624,GO:0030141,GO:0030163,GO:0031410,GO:0031595,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
Evalue	4.43e-127
EggNOG OGs	COG5071@1\|root,KOG1498@2759\|Eukaryota,38BJ1@33154\|Opisthokonta,3BBH7@33208\|Metazoa,3D02E@33213\|Bilateria,47YUV@7711\|Chordata
Description	proteasome-mediated ubiquitin-dependent protein catabolic process
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6954	Gvermi6954	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 740132..741529 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6954.t1.start1	Gvermi6954.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 740132..740134 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6954.t1.CDS1	Gvermi6954.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 740132..741529 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6954.t1.exon1	Gvermi6954.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 740132..741529 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6954.t1.stop1	Gvermi6954.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 741527..741529 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6954.t1	Gvermi6954.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 740132..741529 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:740132..741529+
coding sequence from alignment at ScGOVlb_24229:740132..741529+

mRNA sequence

>Gvermi6954.t1 ID=Gvermi6954.t1|Name=Gvermi6954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=466bp
MAAEKMDIDNGVSTGKYTAGFGPFETDPEIEAKIAEAVSLGESSGTQVAI
DKLLSIERINRNAGAAPETAAICVNLIRLLHKDKNWKAIGEYAVLISKRR
AQLKAAVQKTVQEVMSYLDETPDEKTKLSMLETLRDVTAGKIFVELERAR
LTRTLAKIKEAKGDIDTAATIMQEMQVETFGGMERLEKFDFILEQVRLCL
DKNDFVRGAIISKKIMPRQLNKEGLSEIKLRYYALMIRIHTHNSDYLQIC
RAYLERYDTTRTTEAQDWMRELKLASLLVILSPKDSMQTDLLHRIQSFKA
MEELPTYAEFLKLFSTDELIRWPILMEQYKNELSSVAALAEADTKDEDLK
WIEALQERVTEHNLRVMAKYYSRIRLDRLAELLDLSEENTERKLAAMVSD
KKTLWARIDRPAKVVSFARPKDADALLNSWSSNVSSLLDIIEKTCHLVHR
ETMVHNIDKGGTAGY*

spliced messenger RNA

>Gvermi6954.t1 ID=Gvermi6954.t1|Name=Gvermi6954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:740132..741529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGAAAAGATGGACATCGACAACGGCGTATCAACTGGGAAGTA
CACTGCAGGCTTTGGACCCTTTGAGACAGATCCAGAAATCGAAGCAAAAA
TTGCCGAAGCTGTTTCCCTCGGCGAGTCTTCAGGTACTCAAGTAGCCATC
GACAAGCTTCTTTCTATAGAACGTATAAATCGAAATGCCGGGGCTGCACC
AGAAACGGCTGCTATTTGTGTCAACCTCATTCGGCTTCTCCACAAAGATA
AAAACTGGAAGGCAATTGGTGAATATGCAGTTCTAATCTCCAAAAGAAGA
GCACAGCTGAAAGCTGCTGTACAGAAAACTGTGCAAGAGGTCATGTCATA
CCTTGACGAAACACCAGACGAAAAAACAAAGCTTTCAATGCTTGAAACAC
TACGAGATGTCACCGCTGGAAAGATTTTTGTTGAGTTGGAAAGAGCTCGT
CTAACCCGAACCTTGGCAAAGATCAAGGAGGCGAAAGGTGACATTGATAC
TGCTGCAACCATTATGCAGGAGATGCAAGTGGAAACTTTTGGAGGAATGG
AAAGGTTGGAGAAGTTTGACTTTATCTTGGAGCAAGTTAGACTATGTCTT
GACAAGAACGATTTTGTCCGTGGTGCTATTATTTCAAAAAAGATCATGCC
GCGTCAACTGAACAAAGAAGGTCTTTCTGAAATCAAATTAAGGTACTATG
CTCTTATGATTCGAATCCACACTCACAACTCAGACTACCTTCAGATATGT
CGAGCTTACCTCGAACGATACGACACCACCAGGACGACAGAGGCGCAAGA
TTGGATGAGAGAGCTAAAGCTTGCGTCTTTGCTCGTCATTCTATCTCCGA
AGGACAGTATGCAAACAGATCTTCTGCATAGAATCCAATCGTTTAAGGCA
ATGGAAGAGCTTCCTACTTACGCAGAATTCTTAAAACTGTTTTCTACAGA
CGAACTTATTCGATGGCCCATTCTTATGGAGCAATATAAGAATGAATTGA
GCTCTGTAGCTGCATTGGCAGAAGCTGATACCAAAGACGAGGATTTAAAA
TGGATTGAAGCGCTCCAGGAACGGGTTACCGAACATAATCTTCGCGTCAT
GGCAAAATATTACTCTCGTATTCGTTTGGACAGGCTTGCAGAACTTTTGG
ATCTCTCAGAGGAAAATACCGAGAGAAAACTTGCCGCCATGGTGTCTGAC
AAGAAGACATTATGGGCAAGGATTGATAGACCGGCCAAGGTAGTTTCCTT
CGCCAGACCTAAAGATGCAGATGCGCTTTTGAATAGCTGGTCCTCCAATG
TTTCGTCATTGTTAGACATTATCGAGAAGACTTGCCATTTAGTTCATCGT
GAAACGATGGTTCACAACATAGACAAGGGGGGAACTGCAGGCTATTAA

protein sequence of Gvermi6954.t1

>Gvermi6954.t1 ID=Gvermi6954.t1|Name=Gvermi6954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=466bp
MAAEKMDIDNGVSTGKYTAGFGPFETDPEIEAKIAEAVSLGESSGTQVAI
DKLLSIERINRNAGAAPETAAICVNLIRLLHKDKNWKAIGEYAVLISKRR
AQLKAAVQKTVQEVMSYLDETPDEKTKLSMLETLRDVTAGKIFVELERAR
LTRTLAKIKEAKGDIDTAATIMQEMQVETFGGMERLEKFDFILEQVRLCL
DKNDFVRGAIISKKIMPRQLNKEGLSEIKLRYYALMIRIHTHNSDYLQIC
RAYLERYDTTRTTEAQDWMRELKLASLLVILSPKDSMQTDLLHRIQSFKA
MEELPTYAEFLKLFSTDELIRWPILMEQYKNELSSVAALAEADTKDEDLK
WIEALQERVTEHNLRVMAKYYSRIRLDRLAELLDLSEENTERKLAAMVSD
KKTLWARIDRPAKVVSFARPKDADALLNSWSSNVSSLLDIIEKTCHLVHR
ETMVHNIDKGGTAGY*

mRNA from alignment at ScGOVlb_24229:740132..741529+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6954.t1 ID=Gvermi6954.t1|Name=Gvermi6954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:740132..741529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCGAAAAGATGGACATCGACAACGGCGTATCAACTGGGAAGTA
CACTGCAGGCTTTGGACCCTTTGAGACAGATCCAGAAATCGAAGCAAAAA
TTGCCGAAGCTGTTTCCCTCGGCGAGTCTTCAGGTACTCAAGTAGCCATC
GACAAGCTTCTTTCTATAGAACGTATAAATCGAAATGCCGGGGCTGCACC
AGAAACGGCTGCTATTTGTGTCAACCTCATTCGGCTTCTCCACAAAGATA
AAAACTGGAAGGCAATTGGTGAATATGCAGTTCTAATCTCCAAAAGAAGA
GCACAGCTGAAAGCTGCTGTACAGAAAACTGTGCAAGAGGTCATGTCATA
CCTTGACGAAACACCAGACGAAAAAACAAAGCTTTCAATGCTTGAAACAC
TACGAGATGTCACCGCTGGAAAGATTTTTGTTGAGTTGGAAAGAGCTCGT
CTAACCCGAACCTTGGCAAAGATCAAGGAGGCGAAAGGTGACATTGATAC
TGCTGCAACCATTATGCAGGAGATGCAAGTGGAAACTTTTGGAGGAATGG
AAAGGTTGGAGAAGTTTGACTTTATCTTGGAGCAAGTTAGACTATGTCTT
GACAAGAACGATTTTGTCCGTGGTGCTATTATTTCAAAAAAGATCATGCC
GCGTCAACTGAACAAAGAAGGTCTTTCTGAAATCAAATTAAGGTACTATG
CTCTTATGATTCGAATCCACACTCACAACTCAGACTACCTTCAGATATGT
CGAGCTTACCTCGAACGATACGACACCACCAGGACGACAGAGGCGCAAGA
TTGGATGAGAGAGCTAAAGCTTGCGTCTTTGCTCGTCATTCTATCTCCGA
AGGACAGTATGCAAACAGATCTTCTGCATAGAATCCAATCGTTTAAGGCA
ATGGAAGAGCTTCCTACTTACGCAGAATTCTTAAAACTGTTTTCTACAGA
CGAACTTATTCGATGGCCCATTCTTATGGAGCAATATAAGAATGAATTGA
GCTCTGTAGCTGCATTGGCAGAAGCTGATACCAAAGACGAGGATTTAAAA
TGGATTGAAGCGCTCCAGGAACGGGTTACCGAACATAATCTTCGCGTCAT
GGCAAAATATTACTCTCGTATTCGTTTGGACAGGCTTGCAGAACTTTTGG
ATCTCTCAGAGGAAAATACCGAGAGAAAACTTGCCGCCATGGTGTCTGAC
AAGAAGACATTATGGGCAAGGATTGATAGACCGGCCAAGGTAGTTTCCTT
CGCCAGACCTAAAGATGCAGATGCGCTTTTGAATAGCTGGTCCTCCAATG
TTTCGTCATTGTTAGACATTATCGAGAAGACTTGCCATTTAGTTCATCGT
GAAACGATGGTTCACAACATAGACAAGGGGGGAACTGCAGGCTATTAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:740132..741529+

>Gvermi6954.t1 ID=Gvermi6954.t1|Name=Gvermi6954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1398bp|location=Sequence derived from alignment at ScGOVlb_24229:740132..741529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCGAAAAGATGGACATCGACAACGGCGTATCAACTGGGAAGTA
CACTGCAGGCTTTGGACCCTTTGAGACAGATCCAGAAATCGAAGCAAAAA
TTGCCGAAGCTGTTTCCCTCGGCGAGTCTTCAGGTACTCAAGTAGCCATC
GACAAGCTTCTTTCTATAGAACGTATAAATCGAAATGCCGGGGCTGCACC
AGAAACGGCTGCTATTTGTGTCAACCTCATTCGGCTTCTCCACAAAGATA
AAAACTGGAAGGCAATTGGTGAATATGCAGTTCTAATCTCCAAAAGAAGA
GCACAGCTGAAAGCTGCTGTACAGAAAACTGTGCAAGAGGTCATGTCATA
CCTTGACGAAACACCAGACGAAAAAACAAAGCTTTCAATGCTTGAAACAC
TACGAGATGTCACCGCTGGAAAGATTTTTGTTGAGTTGGAAAGAGCTCGT
CTAACCCGAACCTTGGCAAAGATCAAGGAGGCGAAAGGTGACATTGATAC
TGCTGCAACCATTATGCAGGAGATGCAAGTGGAAACTTTTGGAGGAATGG
AAAGGTTGGAGAAGTTTGACTTTATCTTGGAGCAAGTTAGACTATGTCTT
GACAAGAACGATTTTGTCCGTGGTGCTATTATTTCAAAAAAGATCATGCC
GCGTCAACTGAACAAAGAAGGTCTTTCTGAAATCAAATTAAGGTACTATG
CTCTTATGATTCGAATCCACACTCACAACTCAGACTACCTTCAGATATGT
CGAGCTTACCTCGAACGATACGACACCACCAGGACGACAGAGGCGCAAGA
TTGGATGAGAGAGCTAAAGCTTGCGTCTTTGCTCGTCATTCTATCTCCGA
AGGACAGTATGCAAACAGATCTTCTGCATAGAATCCAATCGTTTAAGGCA
ATGGAAGAGCTTCCTACTTACGCAGAATTCTTAAAACTGTTTTCTACAGA
CGAACTTATTCGATGGCCCATTCTTATGGAGCAATATAAGAATGAATTGA
GCTCTGTAGCTGCATTGGCAGAAGCTGATACCAAAGACGAGGATTTAAAA
TGGATTGAAGCGCTCCAGGAACGGGTTACCGAACATAATCTTCGCGTCAT
GGCAAAATATTACTCTCGTATTCGTTTGGACAGGCTTGCAGAACTTTTGG
ATCTCTCAGAGGAAAATACCGAGAGAAAACTTGCCGCCATGGTGTCTGAC
AAGAAGACATTATGGGCAAGGATTGATAGACCGGCCAAGGTAGTTTCCTT
CGCCAGACCTAAAGATGCAGATGCGCTTTTGAATAGCTGGTCCTCCAATG
TTTCGTCATTGTTAGACATTATCGAGAAGACTTGCCATTTAGTTCATCGT
GAAACGATGGTTCACAACATAGACAAGGGGGGAACTGCAGGCTATTAA