Gvermi6953.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6953.t1
Unique NameGvermi6953.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:737907..738819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6953Gvermi6953Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 737907..738819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6953.t1Gvermi6953.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 737907..738819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6953.t1.CDS1Gvermi6953.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 737907..737909 +
Gvermi6953.t1.CDS2Gvermi6953.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 738026..738126 +
Gvermi6953.t1.CDS3Gvermi6953.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 738222..738337 +
Gvermi6953.t1.CDS4Gvermi6953.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 738434..738819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6953.t1.exon1Gvermi6953.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 737907..737909 +
Gvermi6953.t1.exon2Gvermi6953.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 738026..738126 +
Gvermi6953.t1.exon3Gvermi6953.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 738222..738337 +
Gvermi6953.t1.exon4Gvermi6953.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 738434..738819 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6953.t1.start1Gvermi6953.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 737907..737909 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6953.t1.intron1Gvermi6953.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 737910..738025 +
Gvermi6953.t1.intron2Gvermi6953.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 738127..738221 +
Gvermi6953.t1.intron3Gvermi6953.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 738338..738433 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6953.t1.stop1Gvermi6953.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 738817..738819 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6953.t1 ID=Gvermi6953.t1|Name=Gvermi6953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=202bp
MVVSEIVAATMIAVYGFRNSYRIVLKTERLIRRKIRRPAPIIEGYHTFPR
FFIRKVFRAGLEIAMRWEGRAKNAAQMAADARLRAKRTSQAVAHRIEDAR
HRAEDVRHRAHIVRERAAEVRDRAKDQTRIMREKAAELRQRAEHAKDRAV
AAKDKLMDIKDKVQARVSPKAKSRKFFSAAHTIMPPESKPLPMVHTRISE
T*
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spliced messenger RNA

>Gvermi6953.t1 ID=Gvermi6953.t1|Name=Gvermi6953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_24229:737907..738819+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTTTCAGAAATAGTCGCAGCGACTATGATCGCTGTCTACGGTTT
CAGGAACAGTTACCGCATTGTCTTAAAAACCGAGCGCCTCATCCGTCGCA
AAATTCGACGCCCTGCTCCCATCATTGAAGGGTATCACACCTTTCCACGC
TTTTTCATTCGCAAAGTCTTCCGCGCGGGTCTCGAAATTGCCATGCGATG
GGAAGGCCGTGCCAAAAATGCTGCACAAATGGCTGCTGATGCCCGCCTTC
GAGCGAAAAGGACTTCTCAGGCTGTGGCTCATCGTATAGAAGACGCTCGC
CATCGTGCGGAAGACGTTCGCCATCGAGCACACATAGTAAGAGAACGTGC
GGCTGAAGTTCGTGATCGTGCAAAGGATCAGACTCGCATCATGAGGGAAA
AAGCAGCTGAATTGCGTCAACGTGCCGAACACGCTAAGGATCGTGCTGTT
GCCGCAAAAGACAAATTGATGGATATCAAAGACAAAGTCCAAGCGCGAGT
ATCGCCCAAGGCGAAATCAAGAAAGTTCTTTAGTGCTGCTCATACTATTA
TGCCTCCAGAGAGTAAGCCATTACCCATGGTCCATACAAGAATATCTGAA
ACCTGA
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protein sequence of Gvermi6953.t1

>Gvermi6953.t1 ID=Gvermi6953.t1|Name=Gvermi6953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=202bp
MVVSEIVAATMIAVYGFRNSYRIVLKTERLIRRKIRRPAPIIEGYHTFPR
FFIRKVFRAGLEIAMRWEGRAKNAAQMAADARLRAKRTSQAVAHRIEDAR
HRAEDVRHRAHIVRERAAEVRDRAKDQTRIMREKAAELRQRAEHAKDRAV
AAKDKLMDIKDKVQARVSPKAKSRKFFSAAHTIMPPESKPLPMVHTRISE
T*
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mRNA from alignment at ScGOVlb_24229:737907..738819+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6953.t1 ID=Gvermi6953.t1|Name=Gvermi6953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=913bp|location=Sequence derived from alignment at ScGOVlb_24229:737907..738819+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATGATCTAAGTAATCCTGTCACCGCTGAGAAGCACATCATATTGT
GCTGACCGGTTGGAAACACCCCGTGTTTGTTCAATTCACGCATTTCTGAC
ATTGCAATGCATCTCTTAGGTTGTTTCAGAAATAGTCGCAGCGACTATGA
TCGCTGTCTACGGTTTCAGGAACAGTTACCGCATTGTCTTAAAAACCGAG
CGCCTCATCCGTCGCAAAATGTATGTATAAGTCGAACCACTTCTCAAGTT
ATTCTTCTACCTCGGGTCATTATCATGTTCTGACTCAAGTCGCAATCAAA
ATCTTCTGCTCATAGTCGACGCCCTGCTCCCATCATTGAAGGGTATCACA
CCTTTCCACGCTTTTTCATTCGCAAAGTCTTCCGCGCGGGTCTCGAAATT
GCCATGCGATGGGAAGGCCGTGCCAAAAATGGTATGTGTGTTTCAAGTGC
TCAGAGCGAAGATCAGTCATCCCTAGCCACTAGTTTCACTGACGTGTTCT
TTATTTATTGTTTCATTTGAAAAATAGCTGCACAAATGGCTGCTGATGCC
CGCCTTCGAGCGAAAAGGACTTCTCAGGCTGTGGCTCATCGTATAGAAGA
CGCTCGCCATCGTGCGGAAGACGTTCGCCATCGAGCACACATAGTAAGAG
AACGTGCGGCTGAAGTTCGTGATCGTGCAAAGGATCAGACTCGCATCATG
AGGGAAAAAGCAGCTGAATTGCGTCAACGTGCCGAACACGCTAAGGATCG
TGCTGTTGCCGCAAAAGACAAATTGATGGATATCAAAGACAAAGTCCAAG
CGCGAGTATCGCCCAAGGCGAAATCAAGAAAGTTCTTTAGTGCTGCTCAT
ACTATTATGCCTCCAGAGAGTAAGCCATTACCCATGGTCCATACAAGAAT
ATCTGAAACCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:737907..738819+

>Gvermi6953.t1 ID=Gvermi6953.t1|Name=Gvermi6953.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=606bp|location=Sequence derived from alignment at ScGOVlb_24229:737907..738819+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGTTTCAGAAATAGTCGCAGCGACTATGATCGCTGTCTACGGTTT
CAGGAACAGTTACCGCATTGTCTTAAAAACCGAGCGCCTCATCCGTCGCA
AAATTCGACGCCCTGCTCCCATCATTGAAGGGTATCACACCTTTCCACGC
TTTTTCATTCGCAAAGTCTTCCGCGCGGGTCTCGAAATTGCCATGCGATG
GGAAGGCCGTGCCAAAAATGCTGCACAAATGGCTGCTGATGCCCGCCTTC
GAGCGAAAAGGACTTCTCAGGCTGTGGCTCATCGTATAGAAGACGCTCGC
CATCGTGCGGAAGACGTTCGCCATCGAGCACACATAGTAAGAGAACGTGC
GGCTGAAGTTCGTGATCGTGCAAAGGATCAGACTCGCATCATGAGGGAAA
AAGCAGCTGAATTGCGTCAACGTGCCGAACACGCTAAGGATCGTGCTGTT
GCCGCAAAAGACAAATTGATGGATATCAAAGACAAAGTCCAAGCGCGAGT
ATCGCCCAAGGCGAAATCAAGAAAGTTCTTTAGTGCTGCTCATACTATTA
TGCCTCCAGAGAGTAAGCCATTACCCATGGTCCATACAAGAATATCTGAA
ACCTGA
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