Gvermi6952.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6952.t1
Unique NameGvermi6952.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:734670..737084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704105.1
Preferred nameCNOT11
PFAMsDUF2363
Max annot lvl2759|Eukaryota
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022402,GO:0023052,GO:0030014,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0032268,GO:0032269,GO:0032991,GO:0033554,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035556,GO:0042770,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:2000045,GO:2000112,GO:2000113,GO:2000134
Evalue2.16e-62
EggNOG OGsCOG3823@1|root,KOG4508@2759|Eukaryota
Descriptiongene silencing by RNA
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6952Gvermi6952Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 734670..737084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6952.t1Gvermi6952.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 734670..737084 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6952.t1.stop1Gvermi6952.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 734670..734672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6952.t1.CDS1Gvermi6952.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 734670..734724 -
Gvermi6952.t1.CDS2Gvermi6952.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 734832..736156 -
Gvermi6952.t1.CDS3Gvermi6952.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 736674..737084 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6952.t1.exon1Gvermi6952.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 734670..734724 -
Gvermi6952.t1.exon2Gvermi6952.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 734832..736156 -
Gvermi6952.t1.exon3Gvermi6952.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 736674..737084 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6952.t1.intron1Gvermi6952.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 734725..734831 -
Gvermi6952.t1.intron2Gvermi6952.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 736157..736673 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6952.t1.start1Gvermi6952.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 737082..737084 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6952.t1 ID=Gvermi6952.t1|Name=Gvermi6952.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp
MRATRPTDTGAAAKTEQLIRKFWELTSTGKYSTVTSCFTDDAIYHDGLFP
KPCVGKEAILAHFRKFETVLPSSFRFVLDDIVAGPDRAGARWHVETGQGT
ELPLSRGLSIYHTVECNGEFFISQAWEYGETPFKVPITYSASKKVIMKLP
LPVKLSKQAFASLIAVLESVNFPLGELSRRLWQSPCAGFSPTTVGSSIAS
LLQDDLLPNPAQRLIAIFVLYDMIAARSAPPSSSASVLERLIASPLSIIL
FELMSDTNPYASEQLFLSHLLRLSEDHRSQSSGGDLPTDGEIAKTAAVAL
YGALEDAIRSGASAATPNITSLRQMWATRHPETSIDSHGLKPVSAVVPDP
DLFVNLDAGQLVDELGSVVALEDFTPTFVRIPPPFLPIELESKELRWIDP
EPLHEIIWDPDMGMKGERGAELREIISKAIKSPIPEAQRMKVRRMLNDDP
KLVHLSGITPQKLPELVNNNASLATEILLKLMPSTQMPMYLDALVNMDMN
LQSMDIVSRLSNTVQLPRDFMRTYISNCIRSCGDITDKPAQDRSVRSFSV
FLKRLIKNRNIDLQDVLVEVHEFCMGYCRIQQVADLYRSLKNESAQ*
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spliced messenger RNA

>Gvermi6952.t1 ID=Gvermi6952.t1|Name=Gvermi6952.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_24229:734670..737084- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCACGCGTCCAACAGATACCGGAGCCGCAGCTAAGACCGAGCA
GCTCATTCGCAAGTTTTGGGAGTTAACATCGACTGGCAAGTACTCAACGG
TCACCTCATGTTTCACGGACGACGCCATATATCATGACGGCTTATTTCCA
AAACCGTGCGTGGGAAAAGAGGCCATCCTGGCTCATTTCAGAAAATTTGA
GACTGTTCTCCCCTCATCGTTCCGCTTCGTGCTTGACGACATTGTCGCTG
GGCCAGACAGAGCTGGCGCAAGGTGGCATGTCGAAACAGGACAAGGCACA
GAGCTACCGCTTAGCAGAGGGCTTTCTATTTACCACACTGTGGAATGCAA
CGGTGAATTTTTCATCTCACAGGCATGGGAGTACGGAGAAACTCCTTTCA
AGGTGCCTATTACTTATTCGGCTTCAAAAAAGGTGATCATGAAACTCCCG
CTCCCCGTAAAGCTTTCGAAGCAGGCTTTTGCTTCCTTGATAGCCGTTTT
GGAAAGCGTGAATTTTCCTCTCGGTGAGCTCTCGCGACGACTATGGCAAT
CTCCTTGCGCTGGGTTTTCCCCCACAACAGTGGGCTCTTCCATTGCTTCC
CTTCTTCAAGATGATCTGCTTCCCAACCCTGCTCAACGACTCATCGCAAT
TTTCGTGCTGTACGACATGATTGCTGCACGTTCTGCGCCTCCCTCGTCTT
CGGCGTCTGTTTTGGAGCGTTTAATTGCAAGCCCCTTGTCTATAATACTG
TTTGAACTCATGAGCGATACCAACCCATACGCTTCGGAGCAGCTTTTTCT
CAGCCATTTACTCCGTCTGTCGGAAGACCATCGCTCACAATCGAGCGGTG
GCGACCTTCCGACAGACGGTGAGATAGCAAAGACTGCTGCTGTCGCGCTG
TATGGTGCACTAGAAGACGCAATTCGCAGTGGCGCTTCAGCCGCGACGCC
CAACATTACTTCCCTCCGCCAAATGTGGGCCACTCGACACCCCGAAACAT
CAATCGACTCGCATGGACTCAAACCCGTCAGCGCTGTAGTCCCAGATCCT
GATCTTTTTGTTAATCTTGATGCTGGCCAACTGGTAGACGAGCTTGGTTC
CGTGGTTGCATTGGAAGACTTCACTCCAACCTTTGTCCGCATACCTCCAC
CATTCCTTCCTATAGAGTTGGAAAGCAAGGAGTTACGTTGGATCGATCCT
GAACCTTTACATGAGATTATCTGGGACCCGGATATGGGAATGAAAGGTGA
GCGTGGAGCCGAACTGCGAGAGATCATCTCAAAAGCAATCAAGAGCCCAA
TACCCGAAGCTCAACGCATGAAAGTACGCCGAATGCTTAATGATGATCCG
AAACTCGTTCATCTCAGCGGAATCACTCCACAAAAATTGCCAGAACTTGT
CAATAACAACGCATCACTTGCTACAGAAATTCTCCTCAAGTTGATGCCGT
CAACGCAGATGCCCATGTACTTGGATGCCCTCGTGAACATGGACATGAAT
CTTCAGTCAATGGACATCGTAAGCCGGCTTTCGAACACTGTCCAACTGCC
GAGGGATTTTATGCGTACCTACATAAGCAACTGCATACGGTCTTGCGGGG
ATATAACAGACAAGCCTGCTCAAGACCGTAGTGTTCGTTCTTTTTCAGTT
TTTTTAAAGCGCCTCATAAAGAACAGAAACATAGACCTACAGGACGTGCT
TGTGGAGGTTCATGAGTTCTGCATGGGATACTGCAGAATTCAACAAGTTG
CAGATCTCTATAGATCTCTGAAGAACGAAAGCGCTCAATAG
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protein sequence of Gvermi6952.t1

>Gvermi6952.t1 ID=Gvermi6952.t1|Name=Gvermi6952.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=597bp
MRATRPTDTGAAAKTEQLIRKFWELTSTGKYSTVTSCFTDDAIYHDGLFP
KPCVGKEAILAHFRKFETVLPSSFRFVLDDIVAGPDRAGARWHVETGQGT
ELPLSRGLSIYHTVECNGEFFISQAWEYGETPFKVPITYSASKKVIMKLP
LPVKLSKQAFASLIAVLESVNFPLGELSRRLWQSPCAGFSPTTVGSSIAS
LLQDDLLPNPAQRLIAIFVLYDMIAARSAPPSSSASVLERLIASPLSIIL
FELMSDTNPYASEQLFLSHLLRLSEDHRSQSSGGDLPTDGEIAKTAAVAL
YGALEDAIRSGASAATPNITSLRQMWATRHPETSIDSHGLKPVSAVVPDP
DLFVNLDAGQLVDELGSVVALEDFTPTFVRIPPPFLPIELESKELRWIDP
EPLHEIIWDPDMGMKGERGAELREIISKAIKSPIPEAQRMKVRRMLNDDP
KLVHLSGITPQKLPELVNNNASLATEILLKLMPSTQMPMYLDALVNMDMN
LQSMDIVSRLSNTVQLPRDFMRTYISNCIRSCGDITDKPAQDRSVRSFSV
FLKRLIKNRNIDLQDVLVEVHEFCMGYCRIQQVADLYRSLKNESAQ*
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mRNA from alignment at ScGOVlb_24229:734670..737084-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6952.t1 ID=Gvermi6952.t1|Name=Gvermi6952.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2415bp|location=Sequence derived from alignment at ScGOVlb_24229:734670..737084- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCACGCGTCCAACAGATACCGGAGCCGCAGCTAAGACCGAGCA
GCTCATTCGCAAGTTTTGGGAGTTAACATCGACTGGCAAGTACTCAACGG
TCACCTCATGTTTCACGGACGACGCCATATATCATGACGGCTTATTTCCA
AAACCGTGCGTGGGAAAAGAGGCCATCCTGGCTCATTTCAGAAAATTTGA
GACTGTTCTCCCCTCATCGTTCCGCTTCGTGCTTGACGACATTGTCGCTG
GGCCAGACAGAGCTGGCGCAAGGTGGCATGTCGAAACAGGACAAGGCACA
GAGCTACCGCTTAGCAGAGGGCTTTCTATTTACCACACTGTGGAATGCAA
CGGTGAATTTTTCATCTCACAGGCATGGGAGTACGGAGAAACTCCTTTCA
AGGTGCCTATTGTAATCTTGCCTCTCCTTCGTCTGTCAGGCTGGTTACTT
CGTTTTCGTGACTCTGCCAAAAGAAACACAGACAAATAGTAGTTCGCATC
TATAAAGTATGCGCTTGAGTCGATGGCTGAGACGTCGTGGTGCGGAGATA
TACACTCGGGTTATTTTGAGGGTAGCCAACGCGATCAAGACGGTGAACGG
GAAGCAATTTCCGTTCCCGCTGCGCCATCAGCCCGTGGACGCCTGATGCG
TTTCACCAGCTCGCCAAGTCTATCCGCTCCACGGAAAAGTTTTGGTCCAA
AAATCGGCCAACCAACACGTGTGCCGCATGGCAACTGCCGTGCCTCGCTC
GTGATGTTCTGTGAATCCTGTGACGCTCCATAAACAATTGTAGCTTGCTG
CAGCGGATATCGGTTTAAGTAGGTTTACGAAATATGTTCCAAGTGAATGT
ATGTGTCGCTTCCTTACTGTAACCTTCTTGTCTCGAGAAGCCTTATGGAC
CCTCTCCGTTCTCAATATTCCTCACTAGACTTATTCGGCTTCAAAAAAGG
TGATCATGAAACTCCCGCTCCCCGTAAAGCTTTCGAAGCAGGCTTTTGCT
TCCTTGATAGCCGTTTTGGAAAGCGTGAATTTTCCTCTCGGTGAGCTCTC
GCGACGACTATGGCAATCTCCTTGCGCTGGGTTTTCCCCCACAACAGTGG
GCTCTTCCATTGCTTCCCTTCTTCAAGATGATCTGCTTCCCAACCCTGCT
CAACGACTCATCGCAATTTTCGTGCTGTACGACATGATTGCTGCACGTTC
TGCGCCTCCCTCGTCTTCGGCGTCTGTTTTGGAGCGTTTAATTGCAAGCC
CCTTGTCTATAATACTGTTTGAACTCATGAGCGATACCAACCCATACGCT
TCGGAGCAGCTTTTTCTCAGCCATTTACTCCGTCTGTCGGAAGACCATCG
CTCACAATCGAGCGGTGGCGACCTTCCGACAGACGGTGAGATAGCAAAGA
CTGCTGCTGTCGCGCTGTATGGTGCACTAGAAGACGCAATTCGCAGTGGC
GCTTCAGCCGCGACGCCCAACATTACTTCCCTCCGCCAAATGTGGGCCAC
TCGACACCCCGAAACATCAATCGACTCGCATGGACTCAAACCCGTCAGCG
CTGTAGTCCCAGATCCTGATCTTTTTGTTAATCTTGATGCTGGCCAACTG
GTAGACGAGCTTGGTTCCGTGGTTGCATTGGAAGACTTCACTCCAACCTT
TGTCCGCATACCTCCACCATTCCTTCCTATAGAGTTGGAAAGCAAGGAGT
TACGTTGGATCGATCCTGAACCTTTACATGAGATTATCTGGGACCCGGAT
ATGGGAATGAAAGGTGAGCGTGGAGCCGAACTGCGAGAGATCATCTCAAA
AGCAATCAAGAGCCCAATACCCGAAGCTCAACGCATGAAAGTACGCCGAA
TGCTTAATGATGATCCGAAACTCGTTCATCTCAGCGGAATCACTCCACAA
AAATTGCCAGAACTTGTCAATAACAACGCATCACTTGCTACAGAAATTCT
CCTCAAGTTGATGCCGTCAACGCAGATGCCCATGTACTTGGATGCCCTCG
TGAACATGGACATGAATCTTCAGTCAATGGACATCGTAAGCCGGCTTTCG
AACACTGTCCAACTGCCGAGGGATTTTATGCGTACCTACATAAGCAACTG
CATACGGTCTTGCGGGGATATAACAGACAAGCCTGCTCAAGACCGTAGTG
TTCGTTCTTTTTCAGTTTTTTTAAAGCGCCTCATAAAGAACAGAAACATA
GACCTACAGGACGTGCTTGTGGAGGTTCATGAGTTCTGCATGGGATACTG
CAGGTAAGTGAATGTTTTGCAACGCGGAACGCATTCTGTGGAATGAAAAA
TTGCTAACCACGCATTGAATGAGAATTCTCAATTCTTTCCATATCTGCCC
TTTGAAACAGAATTCAACAAGTTGCAGATCTCTATAGATCTCTGAAGAAC
GAAAGCGCTCAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:734670..737084-

>Gvermi6952.t1 ID=Gvermi6952.t1|Name=Gvermi6952.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1791bp|location=Sequence derived from alignment at ScGOVlb_24229:734670..737084- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCACGCGTCCAACAGATACCGGAGCCGCAGCTAAGACCGAGCA
GCTCATTCGCAAGTTTTGGGAGTTAACATCGACTGGCAAGTACTCAACGG
TCACCTCATGTTTCACGGACGACGCCATATATCATGACGGCTTATTTCCA
AAACCGTGCGTGGGAAAAGAGGCCATCCTGGCTCATTTCAGAAAATTTGA
GACTGTTCTCCCCTCATCGTTCCGCTTCGTGCTTGACGACATTGTCGCTG
GGCCAGACAGAGCTGGCGCAAGGTGGCATGTCGAAACAGGACAAGGCACA
GAGCTACCGCTTAGCAGAGGGCTTTCTATTTACCACACTGTGGAATGCAA
CGGTGAATTTTTCATCTCACAGGCATGGGAGTACGGAGAAACTCCTTTCA
AGGTGCCTATTACTTATTCGGCTTCAAAAAAGGTGATCATGAAACTCCCG
CTCCCCGTAAAGCTTTCGAAGCAGGCTTTTGCTTCCTTGATAGCCGTTTT
GGAAAGCGTGAATTTTCCTCTCGGTGAGCTCTCGCGACGACTATGGCAAT
CTCCTTGCGCTGGGTTTTCCCCCACAACAGTGGGCTCTTCCATTGCTTCC
CTTCTTCAAGATGATCTGCTTCCCAACCCTGCTCAACGACTCATCGCAAT
TTTCGTGCTGTACGACATGATTGCTGCACGTTCTGCGCCTCCCTCGTCTT
CGGCGTCTGTTTTGGAGCGTTTAATTGCAAGCCCCTTGTCTATAATACTG
TTTGAACTCATGAGCGATACCAACCCATACGCTTCGGAGCAGCTTTTTCT
CAGCCATTTACTCCGTCTGTCGGAAGACCATCGCTCACAATCGAGCGGTG
GCGACCTTCCGACAGACGGTGAGATAGCAAAGACTGCTGCTGTCGCGCTG
TATGGTGCACTAGAAGACGCAATTCGCAGTGGCGCTTCAGCCGCGACGCC
CAACATTACTTCCCTCCGCCAAATGTGGGCCACTCGACACCCCGAAACAT
CAATCGACTCGCATGGACTCAAACCCGTCAGCGCTGTAGTCCCAGATCCT
GATCTTTTTGTTAATCTTGATGCTGGCCAACTGGTAGACGAGCTTGGTTC
CGTGGTTGCATTGGAAGACTTCACTCCAACCTTTGTCCGCATACCTCCAC
CATTCCTTCCTATAGAGTTGGAAAGCAAGGAGTTACGTTGGATCGATCCT
GAACCTTTACATGAGATTATCTGGGACCCGGATATGGGAATGAAAGGTGA
GCGTGGAGCCGAACTGCGAGAGATCATCTCAAAAGCAATCAAGAGCCCAA
TACCCGAAGCTCAACGCATGAAAGTACGCCGAATGCTTAATGATGATCCG
AAACTCGTTCATCTCAGCGGAATCACTCCACAAAAATTGCCAGAACTTGT
CAATAACAACGCATCACTTGCTACAGAAATTCTCCTCAAGTTGATGCCGT
CAACGCAGATGCCCATGTACTTGGATGCCCTCGTGAACATGGACATGAAT
CTTCAGTCAATGGACATCGTAAGCCGGCTTTCGAACACTGTCCAACTGCC
GAGGGATTTTATGCGTACCTACATAAGCAACTGCATACGGTCTTGCGGGG
ATATAACAGACAAGCCTGCTCAAGACCGTAGTGTTCGTTCTTTTTCAGTT
TTTTTAAAGCGCCTCATAAAGAACAGAAACATAGACCTACAGGACGTGCT
TGTGGAGGTTCATGAGTTCTGCATGGGATACTGCAGAATTCAACAAGTTG
CAGATCTCTATAGATCTCTGAAGAACGAAAGCGCTCAATAG
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