Gvermi6950.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6950.t1
Unique NameGvermi6950.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:727175..728071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702843.1
Preferred nameUBC4
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00156
KEGG koko:K00252,ko:K06689,ko:K10746
KEGG ReactionR02487,R02488,R10074
KEGG Pathwayko00071,ko00310,ko00362,ko00380,ko01100,ko01120,ko01130,ko03430,ko04013,ko04120,ko04141,ko04624,map00071,map00310,map00362,map00380,map01100,map01120,map01130,map03430,map04013,map04120,map04141,map04624
KEGG ModuleM00032
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000502,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006605,GO:0006625,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006984,GO:0006991,GO:0006996,GO:0007031,GO:0007088,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010559,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010965,GO:0015031,GO:0015833,GO:0016043,GO:0016485,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030071,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031331,GO:0031399,GO:0031461,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032933,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0033554,GO:0034605,GO:0034613,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0042886,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043574,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045893,GO:0045931,GO:0045935,GO:0045944,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051865,GO:0051983,GO:0051984,GO:0060049,GO:0060090,GO:0060255,GO:0061631,GO:0061650,GO:0062033,GO:0065007,GO:0070013,GO:0070647,GO:0070727,GO:0070887,GO:0070936,GO:0071218,GO:0071310,GO:0071501,GO:0071629,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090068,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902680,GO:1903018,GO:1903052,GO:1903364,GO:1903506,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2001141,GO:2001252
Evalue1.73e-96
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota
EC1.3.8.6,2.3.2.23
Descriptionprotein modification by small protein conjugation
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6950Gvermi6950Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 727175..728071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6950.t1Gvermi6950.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 727175..728071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6950.t1.stop1Gvermi6950.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 727175..727177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6950.t1.CDS1Gvermi6950.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 727175..727498 -
Gvermi6950.t1.CDS2Gvermi6950.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 727620..727664 -
Gvermi6950.t1.CDS3Gvermi6950.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 727797..727847 -
Gvermi6950.t1.CDS4Gvermi6950.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 728048..728071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6950.t1.exon1Gvermi6950.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 727175..727498 -
Gvermi6950.t1.exon2Gvermi6950.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 727620..727664 -
Gvermi6950.t1.exon3Gvermi6950.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 727797..727847 -
Gvermi6950.t1.exon4Gvermi6950.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 728048..728071 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6950.t1.intron1Gvermi6950.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 727499..727619 -
Gvermi6950.t1.intron2Gvermi6950.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 727665..727796 -
Gvermi6950.t1.intron3Gvermi6950.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 727848..728047 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6950.t1.start1Gvermi6950.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 728069..728071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6950.t1 ID=Gvermi6950.t1|Name=Gvermi6950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=148bp
MALKRIKKELQDLGKDPPSNCSAGPASDDLFNWQATIMGPPDSPYSGGVY
FLTIHFPTDYPFKPPKISFVTRIYHPNINSNGSICLDILRDQWSPALTIS
KVLLSICSLLTDPNPDDPLVPEIAQTYKTNRARYEDTAREWTRKYAQ*
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spliced messenger RNA

>Gvermi6950.t1 ID=Gvermi6950.t1|Name=Gvermi6950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_24229:727175..728071- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTGAAGCGAATCAAGAAGGAACTTCAAGACCTCGGAAAGGACCC
ACCTTCAAACTGCTCCGCCGGACCGGCTTCGGATGATCTTTTCAACTGGC
AAGCAACAATCATGGGACCGCCCGACTCACCATACTCGGGAGGTGTCTAT
TTCCTCACCATTCATTTCCCTACGGACTATCCCTTTAAGCCACCGAAGAT
TTCTTTCGTGACTCGTATCTATCATCCGAACATCAATTCAAATGGAAGCA
TATGCCTCGACATTTTACGTGATCAATGGAGTCCTGCGCTCACTATATCA
AAAGTTCTATTGTCCATATGTTCGCTGTTGACCGACCCTAACCCCGACGA
CCCGCTCGTTCCGGAAATCGCTCAGACTTATAAGACGAACCGCGCAAGGT
ATGAGGATACAGCCCGAGAATGGACTAGGAAATATGCCCAGTAA
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protein sequence of Gvermi6950.t1

>Gvermi6950.t1 ID=Gvermi6950.t1|Name=Gvermi6950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MALKRIKKELQDLGKDPPSNCSAGPASDDLFNWQATIMGPPDSPYSGGVY
FLTIHFPTDYPFKPPKISFVTRIYHPNINSNGSICLDILRDQWSPALTIS
KVLLSICSLLTDPNPDDPLVPEIAQTYKTNRARYEDTAREWTRKYAQ*
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mRNA from alignment at ScGOVlb_24229:727175..728071-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6950.t1 ID=Gvermi6950.t1|Name=Gvermi6950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_24229:727175..728071- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCTGAAGCGAATCAAGAAGGTGCGCTATCAACCCCAACGCGTTCT
CTTCTATAGCCCGCTTGTTTCTATTCATTCGAGTTCTTCAAGCGACTCCC
GCCGTTTCGCGTCTTTTCGGAATCTCTTTGGCGCCGGAGGCCCATGTTCT
GCTCACCACAACAACGTTCTAACCATAGTTCTGAAACATTTTCATGCACC
TCGTATTTCTTGTTTGGCTAACAGGAACTTCAAGACCTCGGAAAGGACCC
ACCTTCAAACTGCTCCGCCGGACCGGTACGTTTTTGTCGCCAAACGCATT
CAGCATCGCTGCCAACGCTCTTCTCTCGCTTCGCTCCCTGTTTTCTGTGC
CGCAAGCGCTGATGGCGATTTGCTTGTGCTAACAATACATGCTGTCCATC
TGTTCAGGCTTCGGATGATCTTTTCAACTGGCAAGCAACAATCATGGGAC
CGGTAAGTTTGCATCTTCCTCTTTGTTTATCTCTCAAACATGTCTGTTTT
CTTCAGTGGCAGATCTTGAGATTTAAAATACTAACTTTGTGCCCAATCGC
CACCCATTTATTACGCAATTTAGCCCGACTCACCATACTCGGGAGGTGTC
TATTTCCTCACCATTCATTTCCCTACGGACTATCCCTTTAAGCCACCGAA
GATTTCTTTCGTGACTCGTATCTATCATCCGAACATCAATTCAAATGGAA
GCATATGCCTCGACATTTTACGTGATCAATGGAGTCCTGCGCTCACTATA
TCAAAAGTTCTATTGTCCATATGTTCGCTGTTGACCGACCCTAACCCCGA
CGACCCGCTCGTTCCGGAAATCGCTCAGACTTATAAGACGAACCGCGCAA
GGTATGAGGATACAGCCCGAGAATGGACTAGGAAATATGCCCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:727175..728071-

>Gvermi6950.t1 ID=Gvermi6950.t1|Name=Gvermi6950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=444bp|location=Sequence derived from alignment at ScGOVlb_24229:727175..728071- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCTGAAGCGAATCAAGAAGGAACTTCAAGACCTCGGAAAGGACCC
ACCTTCAAACTGCTCCGCCGGACCGGCTTCGGATGATCTTTTCAACTGGC
AAGCAACAATCATGGGACCGCCCGACTCACCATACTCGGGAGGTGTCTAT
TTCCTCACCATTCATTTCCCTACGGACTATCCCTTTAAGCCACCGAAGAT
TTCTTTCGTGACTCGTATCTATCATCCGAACATCAATTCAAATGGAAGCA
TATGCCTCGACATTTTACGTGATCAATGGAGTCCTGCGCTCACTATATCA
AAAGTTCTATTGTCCATATGTTCGCTGTTGACCGACCCTAACCCCGACGA
CCCGCTCGTTCCGGAAATCGCTCAGACTTATAAGACGAACCGCGCAAGGT
ATGAGGATACAGCCCGAGAATGGACTAGGAAATATGCCCAGTAA
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