Gvermi6945.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6945.t1
Unique NameGvermi6945.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:713224..714704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra027674.1-P
Preferred nameSPO11-2
PFAMsTP6A_N
Max annot lvl35493|Streptophyta
KEGG koko:K10878
KEGG Pathwayko04113,map04113
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000729,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0009553,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0042138,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048229,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0061458,GO:0061505,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Evalue5.48e-53
EggNOG OGsCOG1697@1|root,KOG2795@2759|Eukaryota,37IVC@33090|Viridiplantae,3GC1K@35493|Streptophyta,3HQ7F@3699|Brassicales
Descriptionmeiotic recombination
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6945Gvermi6945Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 713224..714704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6945.t1Gvermi6945.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 713224..714704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6945.t1.stop1Gvermi6945.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 713224..713226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6945.t1.CDS1Gvermi6945.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 713224..713504 -
Gvermi6945.t1.CDS2Gvermi6945.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 713568..713671 -
Gvermi6945.t1.CDS3Gvermi6945.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 713764..713902 -
Gvermi6945.t1.CDS4Gvermi6945.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 714000..714075 -
Gvermi6945.t1.CDS5Gvermi6945.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 714159..714704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6945.t1.exon1Gvermi6945.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 713224..713504 -
Gvermi6945.t1.exon2Gvermi6945.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 713568..713671 -
Gvermi6945.t1.exon3Gvermi6945.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 713764..713902 -
Gvermi6945.t1.exon4Gvermi6945.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 714000..714075 -
Gvermi6945.t1.exon5Gvermi6945.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 714159..714704 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6945.t1.intron1Gvermi6945.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 713505..713567 -
Gvermi6945.t1.intron2Gvermi6945.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 713672..713763 -
Gvermi6945.t1.intron3Gvermi6945.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 713903..713999 -
Gvermi6945.t1.intron4Gvermi6945.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 714076..714158 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6945.t1.start1Gvermi6945.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 714702..714704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6945.t1 ID=Gvermi6945.t1|Name=Gvermi6945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=382bp
MQRLEQHQQSFLAAAGLAPLQVRHEEHPAVILENIESLAMNFAYDLTTDN
NDGVFNMINRTYENVLQDDQTGALLLGEKKTIRKCNHRTASSISRMLQVM
ATVQKLLLCGRRVSQRELFYRLISAFDSQAQLNHMILDVSALLRAPRYAL
NIGAATRGVIAGNVSVAIPGSPYKVDCEFVGPNGWPIPGDVRTAMSVVFA
SPARYILVIEKFGIFTRLVQDRFYDRLPCILVCGKGYPSVATRAITSVFA
SRLRIPALGLADFNPHGACLLQCYRRGSARSGVEGAQFTCDVRWLGLRSS
HILKHSYIGLSGEVLTKRDVAIICGLYRNHNVFRENEYYANELEAMKQLG
KYELQWLYGHSSGTTFLQNFVLEAILHGDYL*
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spliced messenger RNA

>Gvermi6945.t1 ID=Gvermi6945.t1|Name=Gvermi6945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24229:713224..714704- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCTTGGAACAACATCAACAGTCCTTTCTGGCCGCTGCAGGCCT
GGCACCGCTTCAAGTTCGCCATGAGGAGCACCCTGCCGTGATCTTGGAGA
ACATAGAATCGCTTGCCATGAATTTCGCCTACGATCTCACGACTGACAAC
AACGATGGCGTCTTTAACATGATAAACCGAACGTATGAAAACGTGTTACA
GGATGACCAAACCGGTGCACTACTGCTCGGGGAGAAGAAGACCATTCGCA
AATGCAATCATCGAACTGCATCTTCTATTTCGCGAATGTTGCAGGTTATG
GCCACGGTTCAAAAATTGTTACTCTGTGGTCGTAGAGTATCACAACGAGA
GCTTTTCTACCGCCTTATTTCGGCTTTCGACTCTCAGGCACAGTTGAACC
ATATGATTCTCGACGTCTCTGCCTTGCTGAGAGCACCGCGATACGCACTC
AACATTGGCGCTGCCACTAGGGGCGTCATCGCCGGAAACGTTAGCGTTGC
TATACCAGGTTCTCCTTATAAAGTTGACTGTGAATTTGTTGGACCTAATG
GTTGGCCAATTCCAGGTGACGTTCGTACCGCCATGTCGGTGGTCTTTGCT
TCACCGGCAAGATACATATTGGTGATCGAAAAGTTCGGCATATTCACGAG
ACTTGTTCAGGATAGGTTTTACGACAGACTTCCGTGTATTCTAGTGTGTG
GAAAAGGATATCCTTCCGTTGCTACTCGAGCAATAACTTCAGTTTTCGCA
TCCAGGCTTCGAATTCCAGCACTTGGATTGGCAGACTTTAATCCACATGG
GGCTTGTTTACTACAGTGCTATCGTCGTGGTAGTGCGAGATCAGGGGTTG
AGGGTGCCCAATTCACGTGCGATGTGCGCTGGCTCGGACTTCGATCATCT
CATATATTGAAGCATTCTTACATTGGACTGAGCGGGGAAGTGCTCACCAA
AAGAGATGTGGCCATAATCTGCGGGTTGTATCGCAATCATAACGTATTTC
GCGAGAACGAGTATTACGCAAACGAGTTGGAGGCTATGAAGCAGCTTGGT
AAATATGAATTGCAGTGGCTTTACGGGCATTCCTCTGGTACAACTTTCCT
GCAAAATTTTGTTCTCGAGGCCATACTTCACGGTGATTATCTTTGA
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protein sequence of Gvermi6945.t1

>Gvermi6945.t1 ID=Gvermi6945.t1|Name=Gvermi6945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=382bp
MQRLEQHQQSFLAAAGLAPLQVRHEEHPAVILENIESLAMNFAYDLTTDN
NDGVFNMINRTYENVLQDDQTGALLLGEKKTIRKCNHRTASSISRMLQVM
ATVQKLLLCGRRVSQRELFYRLISAFDSQAQLNHMILDVSALLRAPRYAL
NIGAATRGVIAGNVSVAIPGSPYKVDCEFVGPNGWPIPGDVRTAMSVVFA
SPARYILVIEKFGIFTRLVQDRFYDRLPCILVCGKGYPSVATRAITSVFA
SRLRIPALGLADFNPHGACLLQCYRRGSARSGVEGAQFTCDVRWLGLRSS
HILKHSYIGLSGEVLTKRDVAIICGLYRNHNVFRENEYYANELEAMKQLG
KYELQWLYGHSSGTTFLQNFVLEAILHGDYL*
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mRNA from alignment at ScGOVlb_24229:713224..714704-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6945.t1 ID=Gvermi6945.t1|Name=Gvermi6945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1481bp|location=Sequence derived from alignment at ScGOVlb_24229:713224..714704- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGCTTGGAACAACATCAACAGTCCTTTCTGGCCGCTGCAGGCCT
GGCACCGCTTCAAGTTCGCCATGAGGAGCACCCTGCCGTGATCTTGGAGA
ACATAGAATCGCTTGCCATGAATTTCGCCTACGATCTCACGACTGACAAC
AACGATGGCGTCTTTAACATGATAAACCGAACGTATGAAAACGTGTTACA
GGATGACCAAACCGGTGCACTACTGCTCGGGGAGAAGAAGACCATTCGCA
AATGCAATCATCGAACTGCATCTTCTATTTCGCGAATGTTGCAGGTTATG
GCCACGGTTCAAAAATTGTTACTCTGTGGTCGTAGAGTATCACAACGAGA
GCTTTTCTACCGCCTTATTTCGGCTTTCGACTCTCAGGCACAGTTGAACC
ATATGATTCTCGACGTCTCTGCCTTGCTGAGAGCACCGCGATACGCACTC
AACATTGGCGCTGCCACTAGGGGCGTCATCGCCGGAAACGTTAGCGTTGC
TATACCAGGTTCTCCTTATAAAGTTGACTGTGAATTTGTTGGACCTGTAA
GTTTTGTCATGTCAAATTCCTTTCTCCCCCATATTTTTGCAGTTCTTGTT
CAGGACTAATGAATGTTGCAATGTTGAAGAATGGTTGGCCAATTCCAGGT
GACGTTCGTACCGCCATGTCGGTGGTCTTTGCTTCACCGGCAAGATACAT
ATTGGGTACGGTTCAGATTCTTGGACATTGAAATAGAGTAGCATGCTTCT
GCTCTAAGCATCAACGAACAGCCACTGACCACGATGTATGTGCACGTTTT
AGTGATCGAAAAGTTCGGCATATTCACGAGACTTGTTCAGGATAGGTTTT
ACGACAGACTTCCGTGTATTCTAGTGTGTGGAAAAGGATATCCTTCCGTT
GCTACTCGAGCAATAACTTCAGTTTTCGCATCCAGGCTTCGGTACGCTGA
ATAAATATTCTCATCTTGATTCAAAAGACTTCTTGAAAATATTGGAAGAA
GTTCTGTTGCTTTCGTACTAACTGAGGCGCCAGAATTCCAGCACTTGGAT
TGGCAGACTTTAATCCACATGGGGCTTGTTTACTACAGTGCTATCGTCGT
GGTAGTGCGAGATCAGGGGTTGAGGGTGCCCAATTCAGTAAGCTCTCCGA
TTCCTTCTTGTGCCAAGTGGTCACCTGATTTCTTACTCGTGCTCGTGAAG
CGTGCGATGTGCGCTGGCTCGGACTTCGATCATCTCATATATTGAAGCAT
TCTTACATTGGACTGAGCGGGGAAGTGCTCACCAAAAGAGATGTGGCCAT
AATCTGCGGGTTGTATCGCAATCATAACGTATTTCGCGAGAACGAGTATT
ACGCAAACGAGTTGGAGGCTATGAAGCAGCTTGGTAAATATGAATTGCAG
TGGCTTTACGGGCATTCCTCTGGTACAACTTTCCTGCAAAATTTTGTTCT
CGAGGCCATACTTCACGGTGATTATCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:713224..714704-

>Gvermi6945.t1 ID=Gvermi6945.t1|Name=Gvermi6945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1146bp|location=Sequence derived from alignment at ScGOVlb_24229:713224..714704- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGCTTGGAACAACATCAACAGTCCTTTCTGGCCGCTGCAGGCCT
GGCACCGCTTCAAGTTCGCCATGAGGAGCACCCTGCCGTGATCTTGGAGA
ACATAGAATCGCTTGCCATGAATTTCGCCTACGATCTCACGACTGACAAC
AACGATGGCGTCTTTAACATGATAAACCGAACGTATGAAAACGTGTTACA
GGATGACCAAACCGGTGCACTACTGCTCGGGGAGAAGAAGACCATTCGCA
AATGCAATCATCGAACTGCATCTTCTATTTCGCGAATGTTGCAGGTTATG
GCCACGGTTCAAAAATTGTTACTCTGTGGTCGTAGAGTATCACAACGAGA
GCTTTTCTACCGCCTTATTTCGGCTTTCGACTCTCAGGCACAGTTGAACC
ATATGATTCTCGACGTCTCTGCCTTGCTGAGAGCACCGCGATACGCACTC
AACATTGGCGCTGCCACTAGGGGCGTCATCGCCGGAAACGTTAGCGTTGC
TATACCAGGTTCTCCTTATAAAGTTGACTGTGAATTTGTTGGACCTAATG
GTTGGCCAATTCCAGGTGACGTTCGTACCGCCATGTCGGTGGTCTTTGCT
TCACCGGCAAGATACATATTGGTGATCGAAAAGTTCGGCATATTCACGAG
ACTTGTTCAGGATAGGTTTTACGACAGACTTCCGTGTATTCTAGTGTGTG
GAAAAGGATATCCTTCCGTTGCTACTCGAGCAATAACTTCAGTTTTCGCA
TCCAGGCTTCGAATTCCAGCACTTGGATTGGCAGACTTTAATCCACATGG
GGCTTGTTTACTACAGTGCTATCGTCGTGGTAGTGCGAGATCAGGGGTTG
AGGGTGCCCAATTCACGTGCGATGTGCGCTGGCTCGGACTTCGATCATCT
CATATATTGAAGCATTCTTACATTGGACTGAGCGGGGAAGTGCTCACCAA
AAGAGATGTGGCCATAATCTGCGGGTTGTATCGCAATCATAACGTATTTC
GCGAGAACGAGTATTACGCAAACGAGTTGGAGGCTATGAAGCAGCTTGGT
AAATATGAATTGCAGTGGCTTTACGGGCATTCCTCTGGTACAACTTTCCT
GCAAAATTTTGTTCTCGAGGCCATACTTCACGGTGATTATCTTTGA
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