Gvermi6940.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6940.t1
Unique NameGvermi6940.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length809
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:702754..705180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6940Gvermi6940Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 702754..705180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6940.t1.stop1Gvermi6940.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 702754..702756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6940.t1.CDS1Gvermi6940.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 702754..705180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6940.t1.exon1Gvermi6940.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 702754..705180 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6940.t1.start1Gvermi6940.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 705178..705180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6940.t1Gvermi6940.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 702754..705180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6940.t1 ID=Gvermi6940.t1|Name=Gvermi6940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=809bp
MASSRTRPPGSLERNGAQSSRPSSQRTASQHLFPSHHTDDELFAARVAAL
IAERHRLLRKGLIHRLQHLKAALLSTELNHDLESAEQPRLRLEQDRDGAP
ENSSPAQLLRPYKDSALSLHPSVSVSIRNRASTALPHADHYSPSQSGENS
SAENQGFPKERAARPSLPYDLRTHAEDANRTEQSDKLLSTVASGDHAQCD
FPQLPHSYSQQILHSRTLPKCVTGDAASTTSLRSLLLISQPLEGDLQSST
EPMSKTIVPSPPLFNASEPAQSKEYPQVFENKPLTRQLHPSASTAVEHGG
KDQLSNVFRNALEEPGPHEFQNAHFETENRYSSEESYHSLRTISSRRNGS
ETQYSNNATEESGPVHGVAHPSGQSSAVEVRDLRRDSASPISPLFRSELQ
LFSKFSADISEPVDSRRWRFRDASAKYRASAVAPTGSLVSQIERKNTVSV
SGTSEDLHGDRPSLDLSLLLKDSLSGLLSRSPGFSRSELAQVINSSKSLP
GRDAQTTEFEEIQIPDVLDPSTGVRKHLTLLSTVFFDTEFLSLIDNNFRV
PVVSRDNSLQEAARICGQISCTLDRRRRSSSEAGHCLPTAGISPYLSYLY
VEPEPRHASSTPGWIAELQEYFATARTPVSANFQRRTYLNMSEHDERRAP
AAAWHFDKTNFSPNTDKLTEFSPVSSHVAYGTATSIRGHGSYYSNQGVHS
SPGDTSVALNFGFQTRTNYPIRKTYLHTHNPKAVSREEGLTQPAHALFRN
EPMSKELLAQTRAAALEGISMGPYDADSLVRDELGSDEDIPVYSIDHEGR
VIAGRHQP*
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spliced messenger RNA

>Gvermi6940.t1 ID=Gvermi6940.t1|Name=Gvermi6940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at ScGOVlb_24229:702754..705180- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCGTCGCGAACCCGTCCTCCAGGTTCTCTGGAACGGAATGGCGC
CCAGTCCTCGCGCCCCTCTAGCCAACGCACTGCTTCCCAGCATTTATTCC
CCTCTCATCATACTGACGATGAACTGTTCGCAGCGCGTGTCGCTGCTCTC
ATTGCTGAGCGTCATCGTTTGTTACGAAAAGGTCTCATTCATCGCCTTCA
GCATCTAAAAGCGGCACTTTTGTCCACGGAGCTCAACCACGATCTTGAGT
CCGCAGAACAACCACGGCTGCGCCTTGAACAGGATCGCGACGGCGCCCCC
GAAAACTCATCTCCTGCTCAACTTCTACGACCATACAAAGATTCTGCACT
AAGTTTGCATCCCAGTGTTTCAGTCAGTATTCGCAACAGAGCATCCACAG
CGTTGCCCCACGCTGACCATTATTCACCAAGTCAATCAGGAGAGAACTCC
AGCGCAGAAAATCAAGGCTTTCCGAAGGAGCGAGCGGCGCGTCCATCTCT
GCCGTACGACTTGAGAACACATGCCGAAGATGCAAATCGAACCGAGCAAT
CCGATAAGCTCCTTTCTACGGTGGCATCAGGAGACCATGCTCAATGTGAT
TTCCCTCAGCTTCCGCATTCTTATTCGCAACAAATACTTCACTCTCGAAC
TCTCCCGAAATGTGTCACAGGAGATGCCGCAAGCACTACTTCACTTAGAT
CTTTGCTTCTAATCTCTCAACCACTAGAAGGTGACCTTCAGTCATCAACT
GAGCCCATGTCTAAAACCATAGTCCCATCTCCTCCACTTTTCAATGCCAG
CGAGCCCGCACAAAGCAAAGAATATCCACAAGTCTTCGAAAACAAACCGC
TCACTCGTCAGCTCCACCCCTCTGCTAGTACCGCTGTTGAACATGGGGGA
AAAGATCAGCTGTCAAACGTGTTTCGCAATGCATTGGAAGAACCTGGGCC
CCACGAGTTCCAAAATGCTCACTTTGAGACGGAAAATCGATATAGTTCTG
AAGAATCATATCACTCTCTCAGAACGATCTCTTCGAGACGCAATGGATCA
GAAACTCAGTATTCAAACAATGCAACGGAAGAGTCGGGTCCTGTTCACGG
AGTTGCGCACCCTTCTGGACAGAGCTCTGCAGTTGAAGTAAGGGACCTCA
GACGCGACTCTGCCAGCCCCATTTCGCCTCTATTTCGTTCTGAGTTGCAA
CTGTTTTCGAAATTCTCCGCAGATATTTCTGAGCCAGTAGACTCGCGGCG
GTGGCGCTTTCGAGATGCTTCAGCAAAGTATCGAGCGAGCGCTGTAGCTC
CCACTGGCTCCCTCGTCTCTCAAATCGAACGAAAAAACACTGTTTCAGTT
TCTGGTACATCTGAAGACCTTCACGGGGACCGTCCGTCCCTCGATTTAAG
CCTTCTCCTCAAAGATTCTTTGAGTGGTTTGTTGTCACGTAGCCCAGGGT
TCTCTCGCTCGGAGCTTGCACAAGTTATCAACTCCTCGAAATCGCTTCCT
GGCCGGGACGCGCAAACCACGGAATTCGAGGAGATTCAAATCCCTGACGT
TTTGGATCCTTCAACAGGAGTACGGAAGCATCTTACGCTGTTGAGCACGG
TGTTCTTCGATACTGAGTTCCTGTCTCTCATCGACAACAATTTTCGTGTA
CCAGTCGTTTCGAGAGACAACTCATTACAGGAGGCCGCCAGGATTTGTGG
CCAAATTTCTTGTACATTAGATCGGCGACGACGGAGTTCCTCCGAAGCCG
GCCACTGCTTGCCAACTGCGGGAATTTCGCCGTACCTGTCTTACTTGTAC
GTTGAACCGGAGCCGCGGCATGCATCATCGACTCCAGGATGGATAGCAGA
GCTCCAGGAATACTTCGCGACAGCCAGGACCCCAGTGTCAGCTAATTTTC
AACGGCGCACGTATCTCAACATGTCCGAGCATGATGAGAGACGCGCTCCC
GCGGCAGCATGGCATTTCGACAAAACTAACTTTTCACCTAACACAGACAA
ATTAACAGAATTTTCACCAGTGTCAAGTCATGTGGCATACGGAACCGCAA
CCAGCATTCGAGGACATGGCTCCTATTATTCGAATCAAGGAGTTCATTCT
TCGCCTGGGGACACATCGGTGGCACTCAATTTTGGCTTCCAAACAAGAAC
TAACTATCCCATCCGAAAAACGTACCTTCATACACACAATCCCAAGGCAG
TATCGCGTGAGGAAGGGCTGACGCAACCCGCACACGCACTATTTCGCAAC
GAGCCGATGAGCAAAGAATTGCTTGCACAGACCCGTGCTGCGGCTCTCGA
AGGCATCTCCATGGGTCCTTATGACGCGGACAGCCTTGTTCGTGATGAAT
TGGGATCCGATGAGGATATTCCAGTGTATTCCATTGACCACGAAGGGAGG
GTCATTGCCGGTAGACATCAACCTTGA
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protein sequence of Gvermi6940.t1

>Gvermi6940.t1 ID=Gvermi6940.t1|Name=Gvermi6940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=809bp
MASSRTRPPGSLERNGAQSSRPSSQRTASQHLFPSHHTDDELFAARVAAL
IAERHRLLRKGLIHRLQHLKAALLSTELNHDLESAEQPRLRLEQDRDGAP
ENSSPAQLLRPYKDSALSLHPSVSVSIRNRASTALPHADHYSPSQSGENS
SAENQGFPKERAARPSLPYDLRTHAEDANRTEQSDKLLSTVASGDHAQCD
FPQLPHSYSQQILHSRTLPKCVTGDAASTTSLRSLLLISQPLEGDLQSST
EPMSKTIVPSPPLFNASEPAQSKEYPQVFENKPLTRQLHPSASTAVEHGG
KDQLSNVFRNALEEPGPHEFQNAHFETENRYSSEESYHSLRTISSRRNGS
ETQYSNNATEESGPVHGVAHPSGQSSAVEVRDLRRDSASPISPLFRSELQ
LFSKFSADISEPVDSRRWRFRDASAKYRASAVAPTGSLVSQIERKNTVSV
SGTSEDLHGDRPSLDLSLLLKDSLSGLLSRSPGFSRSELAQVINSSKSLP
GRDAQTTEFEEIQIPDVLDPSTGVRKHLTLLSTVFFDTEFLSLIDNNFRV
PVVSRDNSLQEAARICGQISCTLDRRRRSSSEAGHCLPTAGISPYLSYLY
VEPEPRHASSTPGWIAELQEYFATARTPVSANFQRRTYLNMSEHDERRAP
AAAWHFDKTNFSPNTDKLTEFSPVSSHVAYGTATSIRGHGSYYSNQGVHS
SPGDTSVALNFGFQTRTNYPIRKTYLHTHNPKAVSREEGLTQPAHALFRN
EPMSKELLAQTRAAALEGISMGPYDADSLVRDELGSDEDIPVYSIDHEGR
VIAGRHQP*
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mRNA from alignment at ScGOVlb_24229:702754..705180-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6940.t1 ID=Gvermi6940.t1|Name=Gvermi6940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at ScGOVlb_24229:702754..705180- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCGTCGCGAACCCGTCCTCCAGGTTCTCTGGAACGGAATGGCGC
CCAGTCCTCGCGCCCCTCTAGCCAACGCACTGCTTCCCAGCATTTATTCC
CCTCTCATCATACTGACGATGAACTGTTCGCAGCGCGTGTCGCTGCTCTC
ATTGCTGAGCGTCATCGTTTGTTACGAAAAGGTCTCATTCATCGCCTTCA
GCATCTAAAAGCGGCACTTTTGTCCACGGAGCTCAACCACGATCTTGAGT
CCGCAGAACAACCACGGCTGCGCCTTGAACAGGATCGCGACGGCGCCCCC
GAAAACTCATCTCCTGCTCAACTTCTACGACCATACAAAGATTCTGCACT
AAGTTTGCATCCCAGTGTTTCAGTCAGTATTCGCAACAGAGCATCCACAG
CGTTGCCCCACGCTGACCATTATTCACCAAGTCAATCAGGAGAGAACTCC
AGCGCAGAAAATCAAGGCTTTCCGAAGGAGCGAGCGGCGCGTCCATCTCT
GCCGTACGACTTGAGAACACATGCCGAAGATGCAAATCGAACCGAGCAAT
CCGATAAGCTCCTTTCTACGGTGGCATCAGGAGACCATGCTCAATGTGAT
TTCCCTCAGCTTCCGCATTCTTATTCGCAACAAATACTTCACTCTCGAAC
TCTCCCGAAATGTGTCACAGGAGATGCCGCAAGCACTACTTCACTTAGAT
CTTTGCTTCTAATCTCTCAACCACTAGAAGGTGACCTTCAGTCATCAACT
GAGCCCATGTCTAAAACCATAGTCCCATCTCCTCCACTTTTCAATGCCAG
CGAGCCCGCACAAAGCAAAGAATATCCACAAGTCTTCGAAAACAAACCGC
TCACTCGTCAGCTCCACCCCTCTGCTAGTACCGCTGTTGAACATGGGGGA
AAAGATCAGCTGTCAAACGTGTTTCGCAATGCATTGGAAGAACCTGGGCC
CCACGAGTTCCAAAATGCTCACTTTGAGACGGAAAATCGATATAGTTCTG
AAGAATCATATCACTCTCTCAGAACGATCTCTTCGAGACGCAATGGATCA
GAAACTCAGTATTCAAACAATGCAACGGAAGAGTCGGGTCCTGTTCACGG
AGTTGCGCACCCTTCTGGACAGAGCTCTGCAGTTGAAGTAAGGGACCTCA
GACGCGACTCTGCCAGCCCCATTTCGCCTCTATTTCGTTCTGAGTTGCAA
CTGTTTTCGAAATTCTCCGCAGATATTTCTGAGCCAGTAGACTCGCGGCG
GTGGCGCTTTCGAGATGCTTCAGCAAAGTATCGAGCGAGCGCTGTAGCTC
CCACTGGCTCCCTCGTCTCTCAAATCGAACGAAAAAACACTGTTTCAGTT
TCTGGTACATCTGAAGACCTTCACGGGGACCGTCCGTCCCTCGATTTAAG
CCTTCTCCTCAAAGATTCTTTGAGTGGTTTGTTGTCACGTAGCCCAGGGT
TCTCTCGCTCGGAGCTTGCACAAGTTATCAACTCCTCGAAATCGCTTCCT
GGCCGGGACGCGCAAACCACGGAATTCGAGGAGATTCAAATCCCTGACGT
TTTGGATCCTTCAACAGGAGTACGGAAGCATCTTACGCTGTTGAGCACGG
TGTTCTTCGATACTGAGTTCCTGTCTCTCATCGACAACAATTTTCGTGTA
CCAGTCGTTTCGAGAGACAACTCATTACAGGAGGCCGCCAGGATTTGTGG
CCAAATTTCTTGTACATTAGATCGGCGACGACGGAGTTCCTCCGAAGCCG
GCCACTGCTTGCCAACTGCGGGAATTTCGCCGTACCTGTCTTACTTGTAC
GTTGAACCGGAGCCGCGGCATGCATCATCGACTCCAGGATGGATAGCAGA
GCTCCAGGAATACTTCGCGACAGCCAGGACCCCAGTGTCAGCTAATTTTC
AACGGCGCACGTATCTCAACATGTCCGAGCATGATGAGAGACGCGCTCCC
GCGGCAGCATGGCATTTCGACAAAACTAACTTTTCACCTAACACAGACAA
ATTAACAGAATTTTCACCAGTGTCAAGTCATGTGGCATACGGAACCGCAA
CCAGCATTCGAGGACATGGCTCCTATTATTCGAATCAAGGAGTTCATTCT
TCGCCTGGGGACACATCGGTGGCACTCAATTTTGGCTTCCAAACAAGAAC
TAACTATCCCATCCGAAAAACGTACCTTCATACACACAATCCCAAGGCAG
TATCGCGTGAGGAAGGGCTGACGCAACCCGCACACGCACTATTTCGCAAC
GAGCCGATGAGCAAAGAATTGCTTGCACAGACCCGTGCTGCGGCTCTCGA
AGGCATCTCCATGGGTCCTTATGACGCGGACAGCCTTGTTCGTGATGAAT
TGGGATCCGATGAGGATATTCCAGTGTATTCCATTGACCACGAAGGGAGG
GTCATTGCCGGTAGACATCAACCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:702754..705180-

>Gvermi6940.t1 ID=Gvermi6940.t1|Name=Gvermi6940.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2427bp|location=Sequence derived from alignment at ScGOVlb_24229:702754..705180- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCGTCGCGAACCCGTCCTCCAGGTTCTCTGGAACGGAATGGCGC
CCAGTCCTCGCGCCCCTCTAGCCAACGCACTGCTTCCCAGCATTTATTCC
CCTCTCATCATACTGACGATGAACTGTTCGCAGCGCGTGTCGCTGCTCTC
ATTGCTGAGCGTCATCGTTTGTTACGAAAAGGTCTCATTCATCGCCTTCA
GCATCTAAAAGCGGCACTTTTGTCCACGGAGCTCAACCACGATCTTGAGT
CCGCAGAACAACCACGGCTGCGCCTTGAACAGGATCGCGACGGCGCCCCC
GAAAACTCATCTCCTGCTCAACTTCTACGACCATACAAAGATTCTGCACT
AAGTTTGCATCCCAGTGTTTCAGTCAGTATTCGCAACAGAGCATCCACAG
CGTTGCCCCACGCTGACCATTATTCACCAAGTCAATCAGGAGAGAACTCC
AGCGCAGAAAATCAAGGCTTTCCGAAGGAGCGAGCGGCGCGTCCATCTCT
GCCGTACGACTTGAGAACACATGCCGAAGATGCAAATCGAACCGAGCAAT
CCGATAAGCTCCTTTCTACGGTGGCATCAGGAGACCATGCTCAATGTGAT
TTCCCTCAGCTTCCGCATTCTTATTCGCAACAAATACTTCACTCTCGAAC
TCTCCCGAAATGTGTCACAGGAGATGCCGCAAGCACTACTTCACTTAGAT
CTTTGCTTCTAATCTCTCAACCACTAGAAGGTGACCTTCAGTCATCAACT
GAGCCCATGTCTAAAACCATAGTCCCATCTCCTCCACTTTTCAATGCCAG
CGAGCCCGCACAAAGCAAAGAATATCCACAAGTCTTCGAAAACAAACCGC
TCACTCGTCAGCTCCACCCCTCTGCTAGTACCGCTGTTGAACATGGGGGA
AAAGATCAGCTGTCAAACGTGTTTCGCAATGCATTGGAAGAACCTGGGCC
CCACGAGTTCCAAAATGCTCACTTTGAGACGGAAAATCGATATAGTTCTG
AAGAATCATATCACTCTCTCAGAACGATCTCTTCGAGACGCAATGGATCA
GAAACTCAGTATTCAAACAATGCAACGGAAGAGTCGGGTCCTGTTCACGG
AGTTGCGCACCCTTCTGGACAGAGCTCTGCAGTTGAAGTAAGGGACCTCA
GACGCGACTCTGCCAGCCCCATTTCGCCTCTATTTCGTTCTGAGTTGCAA
CTGTTTTCGAAATTCTCCGCAGATATTTCTGAGCCAGTAGACTCGCGGCG
GTGGCGCTTTCGAGATGCTTCAGCAAAGTATCGAGCGAGCGCTGTAGCTC
CCACTGGCTCCCTCGTCTCTCAAATCGAACGAAAAAACACTGTTTCAGTT
TCTGGTACATCTGAAGACCTTCACGGGGACCGTCCGTCCCTCGATTTAAG
CCTTCTCCTCAAAGATTCTTTGAGTGGTTTGTTGTCACGTAGCCCAGGGT
TCTCTCGCTCGGAGCTTGCACAAGTTATCAACTCCTCGAAATCGCTTCCT
GGCCGGGACGCGCAAACCACGGAATTCGAGGAGATTCAAATCCCTGACGT
TTTGGATCCTTCAACAGGAGTACGGAAGCATCTTACGCTGTTGAGCACGG
TGTTCTTCGATACTGAGTTCCTGTCTCTCATCGACAACAATTTTCGTGTA
CCAGTCGTTTCGAGAGACAACTCATTACAGGAGGCCGCCAGGATTTGTGG
CCAAATTTCTTGTACATTAGATCGGCGACGACGGAGTTCCTCCGAAGCCG
GCCACTGCTTGCCAACTGCGGGAATTTCGCCGTACCTGTCTTACTTGTAC
GTTGAACCGGAGCCGCGGCATGCATCATCGACTCCAGGATGGATAGCAGA
GCTCCAGGAATACTTCGCGACAGCCAGGACCCCAGTGTCAGCTAATTTTC
AACGGCGCACGTATCTCAACATGTCCGAGCATGATGAGAGACGCGCTCCC
GCGGCAGCATGGCATTTCGACAAAACTAACTTTTCACCTAACACAGACAA
ATTAACAGAATTTTCACCAGTGTCAAGTCATGTGGCATACGGAACCGCAA
CCAGCATTCGAGGACATGGCTCCTATTATTCGAATCAAGGAGTTCATTCT
TCGCCTGGGGACACATCGGTGGCACTCAATTTTGGCTTCCAAACAAGAAC
TAACTATCCCATCCGAAAAACGTACCTTCATACACACAATCCCAAGGCAG
TATCGCGTGAGGAAGGGCTGACGCAACCCGCACACGCACTATTTCGCAAC
GAGCCGATGAGCAAAGAATTGCTTGCACAGACCCGTGCTGCGGCTCTCGA
AGGCATCTCCATGGGTCCTTATGACGCGGACAGCCTTGTTCGTGATGAAT
TGGGATCCGATGAGGATATTCCAGTGTATTCCATTGACCACGAAGGGAGG
GTCATTGCCGGTAGACATCAACCTTGA
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