Gvermi6934.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6934.t1
Unique NameGvermi6934.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:614370..615419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121015.N789_06070
PFAMsCMAS
Max annot lvl135614|Xanthomonadales
KEGG koko:K00574
Evalue5.03e-123
EggNOG OGsCOG2230@1|root,COG2230@2|Bacteria,1MUW5@1224|Proteobacteria,1RPUC@1236|Gammaproteobacteria,1X38D@135614|Xanthomonadales
EC2.1.1.79
Descriptionsynthase
COG categoryM
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6934Gvermi6934Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 614370..615419 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6934.t1.stop1Gvermi6934.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 614370..614372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6934.t1.CDS1Gvermi6934.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 614370..615419 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6934.t1.exon1Gvermi6934.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 614370..615419 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6934.t1.start1Gvermi6934.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 615417..615419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6934.t1Gvermi6934.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 614370..615419 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6934.t1 ID=Gvermi6934.t1|Name=Gvermi6934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=350bp
MAMMMRVAEALLERNAAPDWVTRIGIRRLLGERLREQSSAGIEEEMRRKM
DMVQALRAEPIAVQQEKANEQHYELPAEFFACTLGRRLKYSACYYESADG
SLNDAEDSMLRLYCQRAALRDGMSVLDLGCGWGSLTLYIAENYPRCRVRA
VSNSWTQRKFIEEEARKRAFGNVSVTTADISATERLDGCGTFDVIFSIEM
FEHMKNYEALLRRIARWMHADSRLFVHVFCHAKYMYGFETEGAANWMGRH
FFSGGTMPSDDALHFFQRHVTLVERWRVDGRHYAQTAEHWLQNFDRNLPR
IRPLLRRTYGRHATRWEAYWRTFYMAVAELFGYDGGQQWHVAHYLLVKR*
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spliced messenger RNA

>Gvermi6934.t1 ID=Gvermi6934.t1|Name=Gvermi6934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24229:614370..615419- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGATGATGCGAGTGGCAGAGGCGCTGCTGGAGCGCAACGCGGC
GCCCGACTGGGTGACGCGCATCGGGATCCGGCGGCTGCTCGGCGAGCGGC
TGCGCGAGCAGAGCAGCGCCGGCATCGAGGAGGAGATGCGGCGCAAGATG
GACATGGTGCAGGCGCTGCGCGCCGAGCCCATCGCCGTGCAGCAGGAGAA
GGCCAACGAGCAGCACTACGAGCTGCCTGCCGAGTTCTTCGCGTGCACGC
TCGGGCGGCGCCTCAAGTACTCGGCGTGCTACTACGAGTCGGCCGACGGC
AGCCTCAACGACGCCGAGGACAGCATGCTGCGGCTGTACTGCCAGCGCGC
GGCGCTGCGCGACGGCATGAGCGTGCTGGACCTCGGCTGCGGCTGGGGCA
GCCTCACGCTGTACATTGCCGAGAACTACCCGCGCTGCCGCGTGCGCGCC
GTGTCCAACAGCTGGACGCAGCGCAAGTTCATCGAGGAGGAGGCGCGCAA
GCGCGCGTTTGGCAACGTGAGCGTGACGACGGCCGACATCAGCGCCACCG
AGCGGCTGGACGGCTGCGGCACGTTCGACGTCATCTTCTCCATCGAGATG
TTCGAGCACATGAAGAACTACGAGGCGCTGCTGCGGCGCATCGCGCGCTG
GATGCACGCCGACAGCCGCCTGTTCGTGCACGTGTTCTGCCACGCCAAGT
ACATGTACGGCTTCGAGACGGAGGGCGCGGCCAACTGGATGGGGCGCCAC
TTCTTCAGCGGCGGCACCATGCCCAGCGACGACGCGCTGCACTTCTTCCA
GCGCCACGTCACGCTGGTGGAGCGCTGGCGCGTCGACGGGCGCCACTACG
CGCAGACCGCCGAGCACTGGCTGCAGAACTTTGACCGCAACCTGCCGCGC
ATCCGCCCGCTGCTGCGCCGCACGTACGGCCGCCACGCCACGCGCTGGGA
GGCGTACTGGCGCACCTTCTACATGGCCGTCGCCGAGCTGTTCGGCTACG
ACGGCGGCCAGCAGTGGCACGTCGCGCACTACCTACTGGTCAAGCGCTAA
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protein sequence of Gvermi6934.t1

>Gvermi6934.t1 ID=Gvermi6934.t1|Name=Gvermi6934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=350bp
MAMMMRVAEALLERNAAPDWVTRIGIRRLLGERLREQSSAGIEEEMRRKM
DMVQALRAEPIAVQQEKANEQHYELPAEFFACTLGRRLKYSACYYESADG
SLNDAEDSMLRLYCQRAALRDGMSVLDLGCGWGSLTLYIAENYPRCRVRA
VSNSWTQRKFIEEEARKRAFGNVSVTTADISATERLDGCGTFDVIFSIEM
FEHMKNYEALLRRIARWMHADSRLFVHVFCHAKYMYGFETEGAANWMGRH
FFSGGTMPSDDALHFFQRHVTLVERWRVDGRHYAQTAEHWLQNFDRNLPR
IRPLLRRTYGRHATRWEAYWRTFYMAVAELFGYDGGQQWHVAHYLLVKR*
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mRNA from alignment at ScGOVlb_24229:614370..615419-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6934.t1 ID=Gvermi6934.t1|Name=Gvermi6934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24229:614370..615419- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGATGATGATGCGAGTGGCAGAGGCGCTGCTGGAGCGCAACGCGGC
GCCCGACTGGGTGACGCGCATCGGGATCCGGCGGCTGCTCGGCGAGCGGC
TGCGCGAGCAGAGCAGCGCCGGCATCGAGGAGGAGATGCGGCGCAAGATG
GACATGGTGCAGGCGCTGCGCGCCGAGCCCATCGCCGTGCAGCAGGAGAA
GGCCAACGAGCAGCACTACGAGCTGCCTGCCGAGTTCTTCGCGTGCACGC
TCGGGCGGCGCCTCAAGTACTCGGCGTGCTACTACGAGTCGGCCGACGGC
AGCCTCAACGACGCCGAGGACAGCATGCTGCGGCTGTACTGCCAGCGCGC
GGCGCTGCGCGACGGCATGAGCGTGCTGGACCTCGGCTGCGGCTGGGGCA
GCCTCACGCTGTACATTGCCGAGAACTACCCGCGCTGCCGCGTGCGCGCC
GTGTCCAACAGCTGGACGCAGCGCAAGTTCATCGAGGAGGAGGCGCGCAA
GCGCGCGTTTGGCAACGTGAGCGTGACGACGGCCGACATCAGCGCCACCG
AGCGGCTGGACGGCTGCGGCACGTTCGACGTCATCTTCTCCATCGAGATG
TTCGAGCACATGAAGAACTACGAGGCGCTGCTGCGGCGCATCGCGCGCTG
GATGCACGCCGACAGCCGCCTGTTCGTGCACGTGTTCTGCCACGCCAAGT
ACATGTACGGCTTCGAGACGGAGGGCGCGGCCAACTGGATGGGGCGCCAC
TTCTTCAGCGGCGGCACCATGCCCAGCGACGACGCGCTGCACTTCTTCCA
GCGCCACGTCACGCTGGTGGAGCGCTGGCGCGTCGACGGGCGCCACTACG
CGCAGACCGCCGAGCACTGGCTGCAGAACTTTGACCGCAACCTGCCGCGC
ATCCGCCCGCTGCTGCGCCGCACGTACGGCCGCCACGCCACGCGCTGGGA
GGCGTACTGGCGCACCTTCTACATGGCCGTCGCCGAGCTGTTCGGCTACG
ACGGCGGCCAGCAGTGGCACGTCGCGCACTACCTACTGGTCAAGCGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:614370..615419-

>Gvermi6934.t1 ID=Gvermi6934.t1|Name=Gvermi6934.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24229:614370..615419- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGATGATGATGCGAGTGGCAGAGGCGCTGCTGGAGCGCAACGCGGC
GCCCGACTGGGTGACGCGCATCGGGATCCGGCGGCTGCTCGGCGAGCGGC
TGCGCGAGCAGAGCAGCGCCGGCATCGAGGAGGAGATGCGGCGCAAGATG
GACATGGTGCAGGCGCTGCGCGCCGAGCCCATCGCCGTGCAGCAGGAGAA
GGCCAACGAGCAGCACTACGAGCTGCCTGCCGAGTTCTTCGCGTGCACGC
TCGGGCGGCGCCTCAAGTACTCGGCGTGCTACTACGAGTCGGCCGACGGC
AGCCTCAACGACGCCGAGGACAGCATGCTGCGGCTGTACTGCCAGCGCGC
GGCGCTGCGCGACGGCATGAGCGTGCTGGACCTCGGCTGCGGCTGGGGCA
GCCTCACGCTGTACATTGCCGAGAACTACCCGCGCTGCCGCGTGCGCGCC
GTGTCCAACAGCTGGACGCAGCGCAAGTTCATCGAGGAGGAGGCGCGCAA
GCGCGCGTTTGGCAACGTGAGCGTGACGACGGCCGACATCAGCGCCACCG
AGCGGCTGGACGGCTGCGGCACGTTCGACGTCATCTTCTCCATCGAGATG
TTCGAGCACATGAAGAACTACGAGGCGCTGCTGCGGCGCATCGCGCGCTG
GATGCACGCCGACAGCCGCCTGTTCGTGCACGTGTTCTGCCACGCCAAGT
ACATGTACGGCTTCGAGACGGAGGGCGCGGCCAACTGGATGGGGCGCCAC
TTCTTCAGCGGCGGCACCATGCCCAGCGACGACGCGCTGCACTTCTTCCA
GCGCCACGTCACGCTGGTGGAGCGCTGGCGCGTCGACGGGCGCCACTACG
CGCAGACCGCCGAGCACTGGCTGCAGAACTTTGACCGCAACCTGCCGCGC
ATCCGCCCGCTGCTGCGCCGCACGTACGGCCGCCACGCCACGCGCTGGGA
GGCGTACTGGCGCACCTTCTACATGGCCGTCGCCGAGCTGTTCGGCTACG
ACGGCGGCCAGCAGTGGCACGTCGCGCACTACCTACTGGTCAAGCGCTAA
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