Gvermi6872.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6872.t1
Unique NameGvermi6872.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:324370..325281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog656024.FsymDg_0880
Preferred namecelA
PFAMsGlyco_hydro_6
Max annot lvl201174|Actinobacteria
KEGG koko:K01179
KEGG ReactionR06200,R11307,R11308
KEGG Pathwayko00500,ko01100,map00500,map01100
Evalue9.6e-57
EggNOG OGsCOG5297@1|root,COG5297@2|Bacteria,2GK39@201174|Actinobacteria,4EV09@85013|Frankiales
EC3.2.1.4
DescriptionBelongs to the glycosyl hydrolase family 6
COG categoryG
CAZyGH5,GH9
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6872Gvermi6872Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 324370..325281 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6872.t1.start1Gvermi6872.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 324370..324372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6872.t1.CDS1Gvermi6872.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 324370..325281 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6872.t1.exon1Gvermi6872.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 324370..325281 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6872.t1.stop1Gvermi6872.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 325279..325281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6872.t1Gvermi6872.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 324370..325281 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6872.t1 ID=Gvermi6872.t1|Name=Gvermi6872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=304bp
MIQNPLAGQELDVTEQQVDRWIRYHRNDPRADLFRDHLANQPVFQWVGDW
VPDIRRHVSRIVNHAKANQALFQIVIYNIPNRDAGGFSAGGAASKREYMQ
WIRVVASAIGSAKGILCIEPDALAHAHSFSGRKKEQRIQILREVVLIFTR
RCRNAYIYLDVGHPAWLSAAHATELFFDAGGRFAHGVSLNVSNSQTTEDC
FHYGVSIVERVSLSHGMIIDTSRNGAGPPPRTLTGTEAWANVPTNRLGMQ
PTLRVNPPNVFNNRLHGLLWIKVPGESDGNYRGAPHAGQFWPEGALRLIG
RET*
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spliced messenger RNA

>Gvermi6872.t1 ID=Gvermi6872.t1|Name=Gvermi6872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_24229:324370..325281+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCAAAATCCCTTGGCTGGGCAGGAGCTGGACGTCACTGAACAGCA
AGTGGATAGATGGATTCGGTATCACAGAAATGACCCACGCGCCGACTTAT
TTCGAGATCATTTAGCGAACCAGCCGGTCTTCCAATGGGTCGGGGATTGG
GTCCCCGACATACGGCGGCACGTATCTCGTATTGTAAATCATGCCAAGGC
AAACCAGGCTCTTTTTCAAATCGTCATTTACAACATTCCCAATCGAGATG
CCGGCGGGTTTTCAGCCGGAGGTGCAGCGTCCAAAAGAGAATATATGCAA
TGGATACGCGTCGTAGCTTCCGCCATCGGTTCGGCAAAAGGTATCCTTTG
CATTGAACCTGATGCCTTGGCTCATGCTCACAGCTTTTCAGGTAGGAAGA
AGGAACAGCGAATCCAAATCCTGCGTGAAGTTGTGCTCATTTTTACGCGT
CGGTGCAGAAATGCATACATCTACTTAGACGTAGGTCACCCGGCATGGCT
CAGTGCTGCACATGCTACGGAATTGTTCTTTGATGCTGGAGGACGGTTTG
CCCATGGAGTCAGTCTGAATGTATCGAATTCGCAGACCACGGAAGATTGC
TTCCATTATGGTGTGAGTATCGTCGAGAGAGTCTCTTTGTCCCATGGCAT
GATAATAGACACATCCAGAAATGGTGCGGGACCCCCGCCTAGAACGTTGA
CTGGAACAGAAGCTTGGGCAAATGTGCCCACCAATCGATTAGGCATGCAG
CCGACACTGAGAGTGAATCCTCCAAATGTATTTAATAACCGACTTCATGG
ATTGCTTTGGATAAAAGTTCCAGGGGAAAGCGACGGAAACTATCGTGGTG
CACCCCACGCGGGACAGTTTTGGCCAGAGGGTGCCTTACGCTTGATTGGG
AGGGAAACGTGA
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protein sequence of Gvermi6872.t1

>Gvermi6872.t1 ID=Gvermi6872.t1|Name=Gvermi6872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MIQNPLAGQELDVTEQQVDRWIRYHRNDPRADLFRDHLANQPVFQWVGDW
VPDIRRHVSRIVNHAKANQALFQIVIYNIPNRDAGGFSAGGAASKREYMQ
WIRVVASAIGSAKGILCIEPDALAHAHSFSGRKKEQRIQILREVVLIFTR
RCRNAYIYLDVGHPAWLSAAHATELFFDAGGRFAHGVSLNVSNSQTTEDC
FHYGVSIVERVSLSHGMIIDTSRNGAGPPPRTLTGTEAWANVPTNRLGMQ
PTLRVNPPNVFNNRLHGLLWIKVPGESDGNYRGAPHAGQFWPEGALRLIG
RET*
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mRNA from alignment at ScGOVlb_24229:324370..325281+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6872.t1 ID=Gvermi6872.t1|Name=Gvermi6872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_24229:324370..325281+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCAAAATCCCTTGGCTGGGCAGGAGCTGGACGTCACTGAACAGCA
AGTGGATAGATGGATTCGGTATCACAGAAATGACCCACGCGCCGACTTAT
TTCGAGATCATTTAGCGAACCAGCCGGTCTTCCAATGGGTCGGGGATTGG
GTCCCCGACATACGGCGGCACGTATCTCGTATTGTAAATCATGCCAAGGC
AAACCAGGCTCTTTTTCAAATCGTCATTTACAACATTCCCAATCGAGATG
CCGGCGGGTTTTCAGCCGGAGGTGCAGCGTCCAAAAGAGAATATATGCAA
TGGATACGCGTCGTAGCTTCCGCCATCGGTTCGGCAAAAGGTATCCTTTG
CATTGAACCTGATGCCTTGGCTCATGCTCACAGCTTTTCAGGTAGGAAGA
AGGAACAGCGAATCCAAATCCTGCGTGAAGTTGTGCTCATTTTTACGCGT
CGGTGCAGAAATGCATACATCTACTTAGACGTAGGTCACCCGGCATGGCT
CAGTGCTGCACATGCTACGGAATTGTTCTTTGATGCTGGAGGACGGTTTG
CCCATGGAGTCAGTCTGAATGTATCGAATTCGCAGACCACGGAAGATTGC
TTCCATTATGGTGTGAGTATCGTCGAGAGAGTCTCTTTGTCCCATGGCAT
GATAATAGACACATCCAGAAATGGTGCGGGACCCCCGCCTAGAACGTTGA
CTGGAACAGAAGCTTGGGCAAATGTGCCCACCAATCGATTAGGCATGCAG
CCGACACTGAGAGTGAATCCTCCAAATGTATTTAATAACCGACTTCATGG
ATTGCTTTGGATAAAAGTTCCAGGGGAAAGCGACGGAAACTATCGTGGTG
CACCCCACGCGGGACAGTTTTGGCCAGAGGGTGCCTTACGCTTGATTGGG
AGGGAAACGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:324370..325281+

>Gvermi6872.t1 ID=Gvermi6872.t1|Name=Gvermi6872.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=912bp|location=Sequence derived from alignment at ScGOVlb_24229:324370..325281+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCAAAATCCCTTGGCTGGGCAGGAGCTGGACGTCACTGAACAGCA
AGTGGATAGATGGATTCGGTATCACAGAAATGACCCACGCGCCGACTTAT
TTCGAGATCATTTAGCGAACCAGCCGGTCTTCCAATGGGTCGGGGATTGG
GTCCCCGACATACGGCGGCACGTATCTCGTATTGTAAATCATGCCAAGGC
AAACCAGGCTCTTTTTCAAATCGTCATTTACAACATTCCCAATCGAGATG
CCGGCGGGTTTTCAGCCGGAGGTGCAGCGTCCAAAAGAGAATATATGCAA
TGGATACGCGTCGTAGCTTCCGCCATCGGTTCGGCAAAAGGTATCCTTTG
CATTGAACCTGATGCCTTGGCTCATGCTCACAGCTTTTCAGGTAGGAAGA
AGGAACAGCGAATCCAAATCCTGCGTGAAGTTGTGCTCATTTTTACGCGT
CGGTGCAGAAATGCATACATCTACTTAGACGTAGGTCACCCGGCATGGCT
CAGTGCTGCACATGCTACGGAATTGTTCTTTGATGCTGGAGGACGGTTTG
CCCATGGAGTCAGTCTGAATGTATCGAATTCGCAGACCACGGAAGATTGC
TTCCATTATGGTGTGAGTATCGTCGAGAGAGTCTCTTTGTCCCATGGCAT
GATAATAGACACATCCAGAAATGGTGCGGGACCCCCGCCTAGAACGTTGA
CTGGAACAGAAGCTTGGGCAAATGTGCCCACCAATCGATTAGGCATGCAG
CCGACACTGAGAGTGAATCCTCCAAATGTATTTAATAACCGACTTCATGG
ATTGCTTTGGATAAAAGTTCCAGGGGAAAGCGACGGAAACTATCGTGGTG
CACCCCACGCGGGACAGTTTTGGCCAGAGGGTGCCTTACGCTTGATTGGG
AGGGAAACGTGA
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