Gvermi6866.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6866.t1
Unique NameGvermi6866.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:245912..247452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6866Gvermi6866Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 245912..247452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6866.t1Gvermi6866.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 245912..247452 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6866.t1.stop1Gvermi6866.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 245912..245914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6866.t1.CDS1Gvermi6866.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 245912..247121 -
Gvermi6866.t1.CDS2Gvermi6866.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 247262..247452 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6866.t1.exon1Gvermi6866.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 245912..247121 -
Gvermi6866.t1.exon2Gvermi6866.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 247262..247452 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6866.t1.intron1Gvermi6866.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 247122..247261 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6866.t1.start1Gvermi6866.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 247450..247452 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6866.t1 ID=Gvermi6866.t1|Name=Gvermi6866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=467bp
MTGSLRIVFTLLAAVLVTTRAQIPTEREENCGSLISSVVSVCSHPTLSRP
DWCCNELIKWNNARCWCEPSAFDALDAVAKSGNAYSFRDGFCPEAFYRPA
RGTIRPEFATCPPFDSFPDTDGSEGCDIAPAELRAQRVESLKSLQGDAVQ
NLADLGSWFQRMDALLGEEATFEMVGLFLAHGRFEVKQYFMTRQGLYNFL
PMTSAETASQFWRNPYTVSYSATSTVPEGTFLQQHFVSFERCSARVDKFY
IVDEQYQQRYGQFWDPNSSPLMSRYIKSSTEWCTTVSERCTGTHYPFADD
ADCQAFYNEMKGAGQVTCNKFSQAYVPQYALHGDILACRSFYLDLAIVEA
AGACKAVGRTPSQTRCDESQCAGAAFIDPAAHNIAEAQFDEVPTLTCSDT
ECADSWPSEAQIALIPEEDRGRFVTSADGFTLTDASTPVVAAAAVEAVNA
QPVSAEEQFGTEGLNV*
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spliced messenger RNA

>Gvermi6866.t1 ID=Gvermi6866.t1|Name=Gvermi6866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_24229:245912..247452- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGCTCGCTGCGCATCGTCTTTACGTTGCTCGCGGCTGTTCTTGT
CACAACTCGAGCACAGATTCCAACAGAAAGGGAAGAAAATTGTGGTTCTC
TTATATCAAGCGTCGTTTCCGTGTGCTCGCATCCAACGTTGTCGAGACCC
GACTGGTGTTGCAACGAACTCATCAAATGGAACAATGCACGATGCTGGTG
TGAACCGAGCGCCTTTGACGCTCTTGACGCTGTCGCCAAATCCGGCAATG
CGTACTCTTTCCGCGATGGCTTCTGTCCCGAGGCATTCTACCGTCCTGCC
CGAGGCACGATTCGCCCGGAGTTTGCAACATGCCCGCCGTTCGACTCCTT
TCCTGACACGGACGGCTCCGAAGGGTGCGACATAGCTCCCGCCGAACTTC
GCGCGCAGCGCGTGGAATCGTTGAAATCGCTGCAAGGAGACGCGGTGCAA
AACCTGGCGGACCTGGGCTCGTGGTTCCAGCGCATGGACGCGTTGCTGGG
CGAGGAAGCGACGTTCGAAATGGTGGGCCTGTTCCTGGCTCACGGCCGCT
TCGAGGTGAAGCAGTACTTCATGACGCGCCAGGGGCTGTACAACTTTTTG
CCGATGACGTCCGCGGAAACGGCGAGCCAGTTCTGGCGCAACCCGTACAC
GGTGTCGTACTCGGCCACCTCGACGGTGCCGGAGGGCACGTTCCTGCAGC
AGCACTTTGTGAGCTTTGAACGGTGCTCTGCGCGAGTTGACAAGTTCTAC
ATTGTGGACGAGCAGTACCAGCAGAGATACGGGCAGTTTTGGGACCCCAA
CTCGTCGCCGTTGATGTCGCGCTACATCAAGAGCAGCACAGAATGGTGCA
CGACGGTGAGCGAGCGCTGCACGGGCACGCACTACCCGTTTGCGGACGAC
GCGGACTGCCAGGCGTTCTACAACGAGATGAAGGGCGCCGGGCAGGTGAC
GTGCAACAAGTTCTCGCAGGCGTACGTGCCGCAGTACGCGCTTCACGGCG
ACATCCTCGCGTGCCGCAGCTTCTACCTGGACCTGGCGATCGTGGAGGCG
GCCGGGGCGTGCAAGGCCGTGGGCAGGACGCCGTCGCAGACGCGATGCGA
CGAGTCGCAGTGCGCGGGGGCGGCGTTCATCGACCCCGCGGCGCACAACA
TCGCCGAGGCGCAGTTCGACGAGGTGCCCACGCTGACGTGCTCGGACACG
GAGTGCGCGGACAGCTGGCCGTCGGAGGCGCAGATCGCGCTGATCCCCGA
GGAGGACCGCGGCAGGTTTGTGACGTCTGCCGATGGGTTCACGCTGACGG
ACGCGAGCACGCCGGTGGTGGCGGCCGCGGCGGTGGAGGCCGTGAATGCG
CAACCGGTGAGCGCGGAGGAACAGTTTGGCACGGAGGGCTTGAACGTGTA
G
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protein sequence of Gvermi6866.t1

>Gvermi6866.t1 ID=Gvermi6866.t1|Name=Gvermi6866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=467bp
MTGSLRIVFTLLAAVLVTTRAQIPTEREENCGSLISSVVSVCSHPTLSRP
DWCCNELIKWNNARCWCEPSAFDALDAVAKSGNAYSFRDGFCPEAFYRPA
RGTIRPEFATCPPFDSFPDTDGSEGCDIAPAELRAQRVESLKSLQGDAVQ
NLADLGSWFQRMDALLGEEATFEMVGLFLAHGRFEVKQYFMTRQGLYNFL
PMTSAETASQFWRNPYTVSYSATSTVPEGTFLQQHFVSFERCSARVDKFY
IVDEQYQQRYGQFWDPNSSPLMSRYIKSSTEWCTTVSERCTGTHYPFADD
ADCQAFYNEMKGAGQVTCNKFSQAYVPQYALHGDILACRSFYLDLAIVEA
AGACKAVGRTPSQTRCDESQCAGAAFIDPAAHNIAEAQFDEVPTLTCSDT
ECADSWPSEAQIALIPEEDRGRFVTSADGFTLTDASTPVVAAAAVEAVNA
QPVSAEEQFGTEGLNV*
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mRNA from alignment at ScGOVlb_24229:245912..247452-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6866.t1 ID=Gvermi6866.t1|Name=Gvermi6866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1541bp|location=Sequence derived from alignment at ScGOVlb_24229:245912..247452- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGGCTCGCTGCGCATCGTCTTTACGTTGCTCGCGGCTGTTCTTGT
CACAACTCGAGCACAGATTCCAACAGAAAGGGAAGAAAATTGTGGTTCTC
TTATATCAAGCGTCGTTTCCGTGTGCTCGCATCCAACGTTGTCGAGACCC
GACTGGTGTTGCAACGAACTCATCAAATGGAACAATGCACGGTATGTCTT
CTGCTTTCATTGTGCTCACGCGTTCAAGCTGCAAAAGCCACAGCAGGATG
AGTGCAGTTTTAACTGACAAACGCTTTCCTCTGCGATGTGTGCGCTCGTG
ATGTTTCAATTCGTTTGTGCGTGCTCGATAGATGCTGGTGTGAACCGAGC
GCCTTTGACGCTCTTGACGCTGTCGCCAAATCCGGCAATGCGTACTCTTT
CCGCGATGGCTTCTGTCCCGAGGCATTCTACCGTCCTGCCCGAGGCACGA
TTCGCCCGGAGTTTGCAACATGCCCGCCGTTCGACTCCTTTCCTGACACG
GACGGCTCCGAAGGGTGCGACATAGCTCCCGCCGAACTTCGCGCGCAGCG
CGTGGAATCGTTGAAATCGCTGCAAGGAGACGCGGTGCAAAACCTGGCGG
ACCTGGGCTCGTGGTTCCAGCGCATGGACGCGTTGCTGGGCGAGGAAGCG
ACGTTCGAAATGGTGGGCCTGTTCCTGGCTCACGGCCGCTTCGAGGTGAA
GCAGTACTTCATGACGCGCCAGGGGCTGTACAACTTTTTGCCGATGACGT
CCGCGGAAACGGCGAGCCAGTTCTGGCGCAACCCGTACACGGTGTCGTAC
TCGGCCACCTCGACGGTGCCGGAGGGCACGTTCCTGCAGCAGCACTTTGT
GAGCTTTGAACGGTGCTCTGCGCGAGTTGACAAGTTCTACATTGTGGACG
AGCAGTACCAGCAGAGATACGGGCAGTTTTGGGACCCCAACTCGTCGCCG
TTGATGTCGCGCTACATCAAGAGCAGCACAGAATGGTGCACGACGGTGAG
CGAGCGCTGCACGGGCACGCACTACCCGTTTGCGGACGACGCGGACTGCC
AGGCGTTCTACAACGAGATGAAGGGCGCCGGGCAGGTGACGTGCAACAAG
TTCTCGCAGGCGTACGTGCCGCAGTACGCGCTTCACGGCGACATCCTCGC
GTGCCGCAGCTTCTACCTGGACCTGGCGATCGTGGAGGCGGCCGGGGCGT
GCAAGGCCGTGGGCAGGACGCCGTCGCAGACGCGATGCGACGAGTCGCAG
TGCGCGGGGGCGGCGTTCATCGACCCCGCGGCGCACAACATCGCCGAGGC
GCAGTTCGACGAGGTGCCCACGCTGACGTGCTCGGACACGGAGTGCGCGG
ACAGCTGGCCGTCGGAGGCGCAGATCGCGCTGATCCCCGAGGAGGACCGC
GGCAGGTTTGTGACGTCTGCCGATGGGTTCACGCTGACGGACGCGAGCAC
GCCGGTGGTGGCGGCCGCGGCGGTGGAGGCCGTGAATGCGCAACCGGTGA
GCGCGGAGGAACAGTTTGGCACGGAGGGCTTGAACGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:245912..247452-

>Gvermi6866.t1 ID=Gvermi6866.t1|Name=Gvermi6866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1401bp|location=Sequence derived from alignment at ScGOVlb_24229:245912..247452- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGGCTCGCTGCGCATCGTCTTTACGTTGCTCGCGGCTGTTCTTGT
CACAACTCGAGCACAGATTCCAACAGAAAGGGAAGAAAATTGTGGTTCTC
TTATATCAAGCGTCGTTTCCGTGTGCTCGCATCCAACGTTGTCGAGACCC
GACTGGTGTTGCAACGAACTCATCAAATGGAACAATGCACGATGCTGGTG
TGAACCGAGCGCCTTTGACGCTCTTGACGCTGTCGCCAAATCCGGCAATG
CGTACTCTTTCCGCGATGGCTTCTGTCCCGAGGCATTCTACCGTCCTGCC
CGAGGCACGATTCGCCCGGAGTTTGCAACATGCCCGCCGTTCGACTCCTT
TCCTGACACGGACGGCTCCGAAGGGTGCGACATAGCTCCCGCCGAACTTC
GCGCGCAGCGCGTGGAATCGTTGAAATCGCTGCAAGGAGACGCGGTGCAA
AACCTGGCGGACCTGGGCTCGTGGTTCCAGCGCATGGACGCGTTGCTGGG
CGAGGAAGCGACGTTCGAAATGGTGGGCCTGTTCCTGGCTCACGGCCGCT
TCGAGGTGAAGCAGTACTTCATGACGCGCCAGGGGCTGTACAACTTTTTG
CCGATGACGTCCGCGGAAACGGCGAGCCAGTTCTGGCGCAACCCGTACAC
GGTGTCGTACTCGGCCACCTCGACGGTGCCGGAGGGCACGTTCCTGCAGC
AGCACTTTGTGAGCTTTGAACGGTGCTCTGCGCGAGTTGACAAGTTCTAC
ATTGTGGACGAGCAGTACCAGCAGAGATACGGGCAGTTTTGGGACCCCAA
CTCGTCGCCGTTGATGTCGCGCTACATCAAGAGCAGCACAGAATGGTGCA
CGACGGTGAGCGAGCGCTGCACGGGCACGCACTACCCGTTTGCGGACGAC
GCGGACTGCCAGGCGTTCTACAACGAGATGAAGGGCGCCGGGCAGGTGAC
GTGCAACAAGTTCTCGCAGGCGTACGTGCCGCAGTACGCGCTTCACGGCG
ACATCCTCGCGTGCCGCAGCTTCTACCTGGACCTGGCGATCGTGGAGGCG
GCCGGGGCGTGCAAGGCCGTGGGCAGGACGCCGTCGCAGACGCGATGCGA
CGAGTCGCAGTGCGCGGGGGCGGCGTTCATCGACCCCGCGGCGCACAACA
TCGCCGAGGCGCAGTTCGACGAGGTGCCCACGCTGACGTGCTCGGACACG
GAGTGCGCGGACAGCTGGCCGTCGGAGGCGCAGATCGCGCTGATCCCCGA
GGAGGACCGCGGCAGGTTTGTGACGTCTGCCGATGGGTTCACGCTGACGG
ACGCGAGCACGCCGGTGGTGGCGGCCGCGGCGGTGGAGGCCGTGAATGCG
CAACCGGTGAGCGCGGAGGAACAGTTTGGCACGGAGGGCTTGAACGTGTA
G
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