Gvermi6847.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6847.t1
Unique NameGvermi6847.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:157111..157773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog172045.KS04_02810
Preferred namemgsA
PFAMsMGS
Max annot lvl976|Bacteroidetes
KEGG rclassRC00424
KEGG koko:K01734
KEGG ReactionR01016
KEGG Pathwayko00640,ko01120,map00640,map01120
Evalue2.84e-44
EggNOG OGsCOG1803@1|root,COG1803@2|Bacteria,4NQJ9@976|Bacteroidetes,1I3E4@117743|Flavobacteriia,34PNV@308865|Elizabethkingia
EC4.2.3.3
DescriptionMGS-like domain
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6847Gvermi6847Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 157111..157773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6847.t1.start1Gvermi6847.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 157111..157113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6847.t1.CDS1Gvermi6847.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 157111..157773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6847.t1.exon1Gvermi6847.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 157111..157773 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6847.t1.stop1Gvermi6847.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 157771..157773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6847.t1Gvermi6847.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 157111..157773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6847.t1 ID=Gvermi6847.t1|Name=Gvermi6847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=221bp
MLVAKFRANVTVKDRRYHFNKYKQCFVGSEAVDWLVDSGHAKTRKAAVDV
GERMRHMGLFDHVVFEHGFEDKNYFYSFNDDEPLAMDDLPDMSQRKGIAL
IAHNNLKSTLLEWAQKHKDALSKHNLVATGTTGSLISEHTGLDVRLMNSG
PLGGDQQIGALVAEQSISVLIFFWDPLTAQPHESDVKALLRLAVLCNAAI
AMNVLTADLLMSAISDSKKK*
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spliced messenger RNA

>Gvermi6847.t1 ID=Gvermi6847.t1|Name=Gvermi6847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_24229:157111..157773+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTTGCGAAATTTCGCGCCAACGTCACAGTGAAAGATAGGAGATA
TCACTTCAACAAATACAAGCAGTGTTTTGTTGGAAGTGAAGCGGTAGACT
GGCTCGTCGACTCTGGACATGCGAAGACCCGGAAGGCTGCGGTTGATGTT
GGTGAGAGGATGCGCCACATGGGACTCTTCGACCACGTCGTCTTTGAACA
TGGTTTTGAAGATAAAAACTACTTTTACTCCTTCAACGACGACGAACCGT
TGGCCATGGATGACCTTCCAGATATGAGCCAGCGCAAGGGAATTGCCCTT
ATAGCTCACAACAACCTTAAGTCCACTCTTCTCGAATGGGCTCAAAAGCA
CAAGGACGCCCTATCGAAGCACAATCTGGTGGCCACGGGAACCACCGGGT
CGTTGATATCAGAACATACTGGCCTTGATGTTCGGCTCATGAACAGTGGG
CCTCTTGGTGGTGACCAGCAAATTGGGGCTCTCGTAGCTGAGCAAAGCAT
CAGCGTTCTGATTTTTTTCTGGGACCCCCTCACAGCTCAACCTCACGAAA
GCGATGTCAAGGCCTTACTTCGCCTCGCAGTTCTTTGCAATGCCGCCATT
GCGATGAATGTCCTCACTGCTGATCTCCTCATGTCTGCAATTTCGGATTC
GAAAAAGAAGTAA
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protein sequence of Gvermi6847.t1

>Gvermi6847.t1 ID=Gvermi6847.t1|Name=Gvermi6847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=221bp
MLVAKFRANVTVKDRRYHFNKYKQCFVGSEAVDWLVDSGHAKTRKAAVDV
GERMRHMGLFDHVVFEHGFEDKNYFYSFNDDEPLAMDDLPDMSQRKGIAL
IAHNNLKSTLLEWAQKHKDALSKHNLVATGTTGSLISEHTGLDVRLMNSG
PLGGDQQIGALVAEQSISVLIFFWDPLTAQPHESDVKALLRLAVLCNAAI
AMNVLTADLLMSAISDSKKK*
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mRNA from alignment at ScGOVlb_24229:157111..157773+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6847.t1 ID=Gvermi6847.t1|Name=Gvermi6847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=663bp|location=Sequence derived from alignment at ScGOVlb_24229:157111..157773+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGTTGCGAAATTTCGCGCCAACGTCACAGTGAAAGATAGGAGATA
TCACTTCAACAAATACAAGCAGTGTTTTGTTGGAAGTGAAGCGGTAGACT
GGCTCGTCGACTCTGGACATGCGAAGACCCGGAAGGCTGCGGTTGATGTT
GGTGAGAGGATGCGCCACATGGGACTCTTCGACCACGTCGTCTTTGAACA
TGGTTTTGAAGATAAAAACTACTTTTACTCCTTCAACGACGACGAACCGT
TGGCCATGGATGACCTTCCAGATATGAGCCAGCGCAAGGGAATTGCCCTT
ATAGCTCACAACAACCTTAAGTCCACTCTTCTCGAATGGGCTCAAAAGCA
CAAGGACGCCCTATCGAAGCACAATCTGGTGGCCACGGGAACCACCGGGT
CGTTGATATCAGAACATACTGGCCTTGATGTTCGGCTCATGAACAGTGGG
CCTCTTGGTGGTGACCAGCAAATTGGGGCTCTCGTAGCTGAGCAAAGCAT
CAGCGTTCTGATTTTTTTCTGGGACCCCCTCACAGCTCAACCTCACGAAA
GCGATGTCAAGGCCTTACTTCGCCTCGCAGTTCTTTGCAATGCCGCCATT
GCGATGAATGTCCTCACTGCTGATCTCCTCATGTCTGCAATTTCGGATTC
GAAAAAGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:157111..157773+

>Gvermi6847.t1 ID=Gvermi6847.t1|Name=Gvermi6847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=663bp|location=Sequence derived from alignment at ScGOVlb_24229:157111..157773+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGTTGCGAAATTTCGCGCCAACGTCACAGTGAAAGATAGGAGATA
TCACTTCAACAAATACAAGCAGTGTTTTGTTGGAAGTGAAGCGGTAGACT
GGCTCGTCGACTCTGGACATGCGAAGACCCGGAAGGCTGCGGTTGATGTT
GGTGAGAGGATGCGCCACATGGGACTCTTCGACCACGTCGTCTTTGAACA
TGGTTTTGAAGATAAAAACTACTTTTACTCCTTCAACGACGACGAACCGT
TGGCCATGGATGACCTTCCAGATATGAGCCAGCGCAAGGGAATTGCCCTT
ATAGCTCACAACAACCTTAAGTCCACTCTTCTCGAATGGGCTCAAAAGCA
CAAGGACGCCCTATCGAAGCACAATCTGGTGGCCACGGGAACCACCGGGT
CGTTGATATCAGAACATACTGGCCTTGATGTTCGGCTCATGAACAGTGGG
CCTCTTGGTGGTGACCAGCAAATTGGGGCTCTCGTAGCTGAGCAAAGCAT
CAGCGTTCTGATTTTTTTCTGGGACCCCCTCACAGCTCAACCTCACGAAA
GCGATGTCAAGGCCTTACTTCGCCTCGCAGTTCTTTGCAATGCCGCCATT
GCGATGAATGTCCTCACTGCTGATCTCCTCATGTCTGCAATTTCGGATTC
GAAAAAGAAGTAA
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