Gvermi6817.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6817.t1
Unique NameGvermi6817.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2379864..2380676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog342610.Patl_2712
PFAMsCpeT
Max annot lvl1236|Gammaproteobacteria
Evalue1.53e-17
EggNOG OGs2CBDP@1|root,2ZYGP@2|Bacteria,1NQAI@1224|Proteobacteria,1SGF1@1236|Gammaproteobacteria
DescriptionCpeT/CpcT family (DUF1001)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6817Gvermi6817Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2379864..2380676 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6817.t1.stop1Gvermi6817.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2379864..2379866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6817.t1.CDS1Gvermi6817.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2379864..2380676 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6817.t1.exon1Gvermi6817.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2379864..2380676 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6817.t1.start1Gvermi6817.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2380674..2380676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6817.t1Gvermi6817.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2379864..2380676 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6817.t1 ID=Gvermi6817.t1|Name=Gvermi6817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=271bp
MQSVAFLSPIPTPRSHTPVRTRARICCTASPPATTGTPTLQRFLNWFRSD
FDNYYQAAHDRSNGVPYSRIHEHMHCRLQPLNNKDLVPEGHAAVFATYWY
NGNADIVYRRRLYTLRDLQDDALEMRIYKMSFIHGLMVAKAKSRFDSVHM
GSVDDTALYEHLEGSQILWRYVAEPHPGSDFVQNGPHFLGAMRYGSFTSK
DSLRYEDDLVLTKEDLWVSERVYNADGVMVGGNRDGIPHKMRRVRRQDEI
KWTMDLDLPDLNLPEHLAEG*
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spliced messenger RNA

>Gvermi6817.t1 ID=Gvermi6817.t1|Name=Gvermi6817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_88:2379864..2380676- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCCGTAGCATTCCTGTCCCCGATACCGACGCCCCGGTCGCACAC
GCCTGTACGCACACGGGCGCGCATCTGCTGCACCGCCTCGCCGCCCGCCA
CAACAGGCACCCCGACCCTGCAACGCTTTCTCAACTGGTTCCGCAGCGAC
TTTGACAACTACTACCAGGCCGCCCACGACCGCTCCAACGGCGTGCCCTA
CTCCCGCATCCACGAGCACATGCACTGCCGCCTTCAGCCGCTCAACAACA
AAGACCTCGTGCCGGAGGGCCATGCCGCCGTGTTCGCCACGTACTGGTAC
AACGGCAACGCCGACATTGTGTACCGCAGAAGGCTGTACACCCTGCGTGA
CTTGCAGGACGACGCGCTGGAAATGCGCATCTACAAGATGTCCTTCATCC
ACGGCCTCATGGTCGCAAAGGCAAAGTCCAGGTTCGACTCCGTGCACATG
GGCTCCGTCGACGACACCGCGCTGTACGAGCACCTCGAGGGGTCCCAGAT
TCTCTGGCGCTACGTCGCGGAGCCGCACCCGGGATCCGACTTTGTCCAAA
ACGGCCCGCACTTTCTCGGCGCCATGCGTTACGGTAGCTTCACGTCCAAG
GATTCGCTGCGGTACGAGGACGACCTCGTGCTCACCAAGGAGGACCTCTG
GGTCTCTGAGCGCGTGTACAATGCAGACGGCGTCATGGTGGGCGGCAACC
GCGATGGCATTCCGCACAAGATGCGCAGGGTTCGCCGCCAGGACGAAATC
AAGTGGACCATGGACCTCGACCTCCCAGACCTAAACTTGCCCGAGCATCT
GGCAGAGGGGTGA
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protein sequence of Gvermi6817.t1

>Gvermi6817.t1 ID=Gvermi6817.t1|Name=Gvermi6817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MQSVAFLSPIPTPRSHTPVRTRARICCTASPPATTGTPTLQRFLNWFRSD
FDNYYQAAHDRSNGVPYSRIHEHMHCRLQPLNNKDLVPEGHAAVFATYWY
NGNADIVYRRRLYTLRDLQDDALEMRIYKMSFIHGLMVAKAKSRFDSVHM
GSVDDTALYEHLEGSQILWRYVAEPHPGSDFVQNGPHFLGAMRYGSFTSK
DSLRYEDDLVLTKEDLWVSERVYNADGVMVGGNRDGIPHKMRRVRRQDEI
KWTMDLDLPDLNLPEHLAEG*
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mRNA from alignment at ScGOVlb_88:2379864..2380676-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6817.t1 ID=Gvermi6817.t1|Name=Gvermi6817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_88:2379864..2380676- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATCCGTAGCATTCCTGTCCCCGATACCGACGCCCCGGTCGCACAC
GCCTGTACGCACACGGGCGCGCATCTGCTGCACCGCCTCGCCGCCCGCCA
CAACAGGCACCCCGACCCTGCAACGCTTTCTCAACTGGTTCCGCAGCGAC
TTTGACAACTACTACCAGGCCGCCCACGACCGCTCCAACGGCGTGCCCTA
CTCCCGCATCCACGAGCACATGCACTGCCGCCTTCAGCCGCTCAACAACA
AAGACCTCGTGCCGGAGGGCCATGCCGCCGTGTTCGCCACGTACTGGTAC
AACGGCAACGCCGACATTGTGTACCGCAGAAGGCTGTACACCCTGCGTGA
CTTGCAGGACGACGCGCTGGAAATGCGCATCTACAAGATGTCCTTCATCC
ACGGCCTCATGGTCGCAAAGGCAAAGTCCAGGTTCGACTCCGTGCACATG
GGCTCCGTCGACGACACCGCGCTGTACGAGCACCTCGAGGGGTCCCAGAT
TCTCTGGCGCTACGTCGCGGAGCCGCACCCGGGATCCGACTTTGTCCAAA
ACGGCCCGCACTTTCTCGGCGCCATGCGTTACGGTAGCTTCACGTCCAAG
GATTCGCTGCGGTACGAGGACGACCTCGTGCTCACCAAGGAGGACCTCTG
GGTCTCTGAGCGCGTGTACAATGCAGACGGCGTCATGGTGGGCGGCAACC
GCGATGGCATTCCGCACAAGATGCGCAGGGTTCGCCGCCAGGACGAAATC
AAGTGGACCATGGACCTCGACCTCCCAGACCTAAACTTGCCCGAGCATCT
GGCAGAGGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2379864..2380676-

>Gvermi6817.t1 ID=Gvermi6817.t1|Name=Gvermi6817.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=813bp|location=Sequence derived from alignment at ScGOVlb_88:2379864..2380676- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATCCGTAGCATTCCTGTCCCCGATACCGACGCCCCGGTCGCACAC
GCCTGTACGCACACGGGCGCGCATCTGCTGCACCGCCTCGCCGCCCGCCA
CAACAGGCACCCCGACCCTGCAACGCTTTCTCAACTGGTTCCGCAGCGAC
TTTGACAACTACTACCAGGCCGCCCACGACCGCTCCAACGGCGTGCCCTA
CTCCCGCATCCACGAGCACATGCACTGCCGCCTTCAGCCGCTCAACAACA
AAGACCTCGTGCCGGAGGGCCATGCCGCCGTGTTCGCCACGTACTGGTAC
AACGGCAACGCCGACATTGTGTACCGCAGAAGGCTGTACACCCTGCGTGA
CTTGCAGGACGACGCGCTGGAAATGCGCATCTACAAGATGTCCTTCATCC
ACGGCCTCATGGTCGCAAAGGCAAAGTCCAGGTTCGACTCCGTGCACATG
GGCTCCGTCGACGACACCGCGCTGTACGAGCACCTCGAGGGGTCCCAGAT
TCTCTGGCGCTACGTCGCGGAGCCGCACCCGGGATCCGACTTTGTCCAAA
ACGGCCCGCACTTTCTCGGCGCCATGCGTTACGGTAGCTTCACGTCCAAG
GATTCGCTGCGGTACGAGGACGACCTCGTGCTCACCAAGGAGGACCTCTG
GGTCTCTGAGCGCGTGTACAATGCAGACGGCGTCATGGTGGGCGGCAACC
GCGATGGCATTCCGCACAAGATGCGCAGGGTTCGCCGCCAGGACGAAATC
AAGTGGACCATGGACCTCGACCTCCCAGACCTAAACTTGCCCGAGCATCT
GGCAGAGGGGTGA
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