Gvermi6811.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6811.t1
Unique Name	Gvermi6811.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	725

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2363108..2365282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6811	Gvermi6811	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2363108..2365282 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6811.t1.start1	Gvermi6811.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2363108..2363110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6811.t1.CDS1	Gvermi6811.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2363108..2365282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6811.t1.exon1	Gvermi6811.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2363108..2365282 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6811.t1.stop1	Gvermi6811.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2365280..2365282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6811.t1	Gvermi6811.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2363108..2365282 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2363108..2365282+
coding sequence from alignment at ScGOVlb_88:2363108..2365282+

mRNA sequence

>Gvermi6811.t1 ID=Gvermi6811.t1|Name=Gvermi6811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=725bp
MDINSRKGFPPPNKSNLYRLLKRFRSILEHNQLAIRPSQPNNETTLLKVC
EKLCHRKKLCVRLLKLSGLCVMPEVMQTLHRYRHLRVYSYREYMKADGSI
KQNGGVLNISFIPPFVVSDDAEEQVAIDKNSRLRAGLWKEASRFDWDSRS
RILQLLFIMAAFSATLNGWIGSSECYSPASAIEIWKRFSDPSFCTAAMPT
EEVSSPQDIRQGWETAVKVIKANVAELYHDKEKPIPPRLRRWGRQTEFAV
RITDVQERTVLWFGQLVSEMCVMTHDRLAQQSAGLKTFLKPLAAQAEASF
VALLEREVGVSLDKFNWKSVFSEEKALELLSRCQYSVKVLRKMPEESSES
AMPHSDRDEDENMEEQANSERNGTKNQELKSNERREVLSPISPDVDVSQT
RKQNRTESISKQQVGSSLQRETDINYAAQEQSTHDDNIGESETDGSSPSL
NRTHQVPNDSGDNQKSVISSEQKEMIVDRDAYIQTIPKDHSFLTGQNDSG
NLVKDEEHVAEHSSNRVYSTNHGNYTEAPVGQYRHHERESENTQKRSGRY
IGMGRETQSVEKRQASEINVPKKKARLQVNQYNDFREHDRFQTDEFIAQA
QANQPSRADPIHTLGIAPSIADSAAGSTFHPHDQHRGFEFSSGRRYGKKQ
ILYSRRLNGSSNSIPKMDPGNVSESHRKRIAEKIALQVKREVLLRRQRSD
KVEKNGRHLVVPPKKRLKYLKPNQ*

spliced messenger RNA

>Gvermi6811.t1 ID=Gvermi6811.t1|Name=Gvermi6811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2175bp|location=Sequence derived from alignment at ScGOVlb_88:2363108..2365282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTAATTCCCGCAAAGGTTTTCCCCCGCCGAACAAGAGCAACCT
TTATCGGTTACTCAAACGTTTTCGCAGTATCCTGGAACATAATCAGTTGG
CCATACGCCCCAGCCAGCCTAACAACGAAACAACCTTGCTCAAGGTTTGT
GAGAAGCTTTGTCACCGCAAAAAGCTTTGCGTTCGTCTTCTCAAGCTCTC
CGGTTTGTGTGTGATGCCTGAAGTCATGCAAACTCTGCACAGGTATAGGC
ATTTGAGAGTATATAGTTACAGGGAGTACATGAAGGCTGACGGAAGTATC
AAGCAAAATGGAGGCGTGCTCAATATTTCTTTCATTCCACCCTTCGTCGT
CTCCGACGACGCAGAGGAACAAGTTGCCATCGATAAGAATTCTCGATTAC
GGGCGGGGCTATGGAAAGAAGCGTCACGCTTTGATTGGGACTCCAGAAGT
CGCATCTTGCAACTTTTATTCATCATGGCGGCCTTCTCAGCTACTCTGAA
TGGTTGGATTGGAAGCTCTGAATGTTATTCACCCGCGTCGGCTATCGAAA
TATGGAAACGCTTCAGCGATCCGAGCTTCTGCACTGCAGCAATGCCTACT
GAGGAGGTAAGCAGTCCCCAAGATATCAGACAAGGATGGGAAACTGCTGT
GAAAGTGATCAAGGCCAACGTGGCTGAACTATATCACGACAAAGAGAAAC
CGATTCCACCAAGGTTGAGACGGTGGGGGCGCCAAACCGAATTCGCAGTG
CGCATCACGGACGTTCAGGAACGCACAGTGTTATGGTTTGGCCAACTCGT
GTCTGAGATGTGTGTGATGACACATGACCGTCTCGCCCAACAATCAGCTG
GCTTGAAAACCTTCCTAAAACCTTTGGCTGCACAAGCTGAAGCCTCGTTT
GTGGCTCTATTGGAAAGAGAAGTTGGTGTATCCCTCGATAAATTCAATTG
GAAGAGCGTATTTTCTGAAGAAAAGGCTCTTGAACTTCTTTCTCGCTGCC
AGTATTCAGTCAAAGTACTAAGGAAAATGCCGGAGGAATCTTCAGAGTCG
GCTATGCCACACAGCGACAGGGATGAAGACGAGAACATGGAAGAACAGGC
AAACTCAGAGCGGAATGGTACTAAGAACCAAGAATTAAAAAGTAATGAAA
GACGGGAGGTTTTGTCACCCATATCGCCCGATGTTGACGTGTCGCAAACG
AGGAAGCAGAATCGGACAGAATCTATATCAAAGCAACAAGTTGGTAGCTC
ACTACAGAGAGAAACTGACATCAACTATGCGGCCCAAGAGCAGTCCACAC
ATGACGACAATATTGGAGAAAGTGAGACTGACGGGTCTTCGCCATCTCTA
AACAGAACTCACCAGGTACCGAATGATAGCGGAGATAACCAGAAGTCCGT
GATTTCAAGCGAACAGAAAGAAATGATTGTGGATCGAGATGCTTATATCC
AAACAATTCCTAAGGATCACAGTTTTCTAACCGGACAGAATGACTCTGGG
AATCTTGTCAAAGACGAAGAACATGTAGCTGAACATTCTAGCAACAGAGT
ATATAGCACGAACCATGGTAATTACACCGAAGCTCCAGTAGGACAGTACA
GGCATCATGAAAGAGAATCAGAAAACACGCAGAAGCGCTCCGGAAGGTAT
ATTGGAATGGGCCGTGAAACACAATCTGTGGAGAAGCGGCAAGCTTCGGA
AATTAATGTACCCAAAAAGAAGGCAAGACTTCAAGTTAATCAGTACAATG
ACTTCAGAGAACATGACAGGTTTCAAACGGATGAATTTATCGCCCAGGCG
CAGGCCAATCAGCCATCAAGAGCAGATCCAATCCATACTTTGGGAATCGC
ACCTAGTATTGCTGATTCTGCTGCGGGATCTACATTTCACCCGCATGACC
AGCACAGAGGCTTTGAGTTTTCAAGCGGTCGGAGGTATGGCAAGAAACAG
ATTCTTTATTCGAGACGCCTAAATGGTAGCTCGAATTCGATACCGAAAAT
GGATCCGGGTAATGTGTCAGAATCTCATCGCAAGCGCATTGCGGAAAAGA
TTGCCCTTCAAGTTAAACGCGAGGTGCTTCTCAGGCGTCAACGGTCTGAT
AAGGTGGAAAAGAACGGAAGGCATCTTGTTGTACCTCCAAAAAAACGACT
AAAGTACTTGAAACCGAATCAATAG

protein sequence of Gvermi6811.t1

>Gvermi6811.t1 ID=Gvermi6811.t1|Name=Gvermi6811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=725bp
MDINSRKGFPPPNKSNLYRLLKRFRSILEHNQLAIRPSQPNNETTLLKVC
EKLCHRKKLCVRLLKLSGLCVMPEVMQTLHRYRHLRVYSYREYMKADGSI
KQNGGVLNISFIPPFVVSDDAEEQVAIDKNSRLRAGLWKEASRFDWDSRS
RILQLLFIMAAFSATLNGWIGSSECYSPASAIEIWKRFSDPSFCTAAMPT
EEVSSPQDIRQGWETAVKVIKANVAELYHDKEKPIPPRLRRWGRQTEFAV
RITDVQERTVLWFGQLVSEMCVMTHDRLAQQSAGLKTFLKPLAAQAEASF
VALLEREVGVSLDKFNWKSVFSEEKALELLSRCQYSVKVLRKMPEESSES
AMPHSDRDEDENMEEQANSERNGTKNQELKSNERREVLSPISPDVDVSQT
RKQNRTESISKQQVGSSLQRETDINYAAQEQSTHDDNIGESETDGSSPSL
NRTHQVPNDSGDNQKSVISSEQKEMIVDRDAYIQTIPKDHSFLTGQNDSG
NLVKDEEHVAEHSSNRVYSTNHGNYTEAPVGQYRHHERESENTQKRSGRY
IGMGRETQSVEKRQASEINVPKKKARLQVNQYNDFREHDRFQTDEFIAQA
QANQPSRADPIHTLGIAPSIADSAAGSTFHPHDQHRGFEFSSGRRYGKKQ
ILYSRRLNGSSNSIPKMDPGNVSESHRKRIAEKIALQVKREVLLRRQRSD
KVEKNGRHLVVPPKKRLKYLKPNQ*

mRNA from alignment at ScGOVlb_88:2363108..2365282+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6811.t1 ID=Gvermi6811.t1|Name=Gvermi6811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2175bp|location=Sequence derived from alignment at ScGOVlb_88:2363108..2365282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACATTAATTCCCGCAAAGGTTTTCCCCCGCCGAACAAGAGCAACCT
TTATCGGTTACTCAAACGTTTTCGCAGTATCCTGGAACATAATCAGTTGG
CCATACGCCCCAGCCAGCCTAACAACGAAACAACCTTGCTCAAGGTTTGT
GAGAAGCTTTGTCACCGCAAAAAGCTTTGCGTTCGTCTTCTCAAGCTCTC
CGGTTTGTGTGTGATGCCTGAAGTCATGCAAACTCTGCACAGGTATAGGC
ATTTGAGAGTATATAGTTACAGGGAGTACATGAAGGCTGACGGAAGTATC
AAGCAAAATGGAGGCGTGCTCAATATTTCTTTCATTCCACCCTTCGTCGT
CTCCGACGACGCAGAGGAACAAGTTGCCATCGATAAGAATTCTCGATTAC
GGGCGGGGCTATGGAAAGAAGCGTCACGCTTTGATTGGGACTCCAGAAGT
CGCATCTTGCAACTTTTATTCATCATGGCGGCCTTCTCAGCTACTCTGAA
TGGTTGGATTGGAAGCTCTGAATGTTATTCACCCGCGTCGGCTATCGAAA
TATGGAAACGCTTCAGCGATCCGAGCTTCTGCACTGCAGCAATGCCTACT
GAGGAGGTAAGCAGTCCCCAAGATATCAGACAAGGATGGGAAACTGCTGT
GAAAGTGATCAAGGCCAACGTGGCTGAACTATATCACGACAAAGAGAAAC
CGATTCCACCAAGGTTGAGACGGTGGGGGCGCCAAACCGAATTCGCAGTG
CGCATCACGGACGTTCAGGAACGCACAGTGTTATGGTTTGGCCAACTCGT
GTCTGAGATGTGTGTGATGACACATGACCGTCTCGCCCAACAATCAGCTG
GCTTGAAAACCTTCCTAAAACCTTTGGCTGCACAAGCTGAAGCCTCGTTT
GTGGCTCTATTGGAAAGAGAAGTTGGTGTATCCCTCGATAAATTCAATTG
GAAGAGCGTATTTTCTGAAGAAAAGGCTCTTGAACTTCTTTCTCGCTGCC
AGTATTCAGTCAAAGTACTAAGGAAAATGCCGGAGGAATCTTCAGAGTCG
GCTATGCCACACAGCGACAGGGATGAAGACGAGAACATGGAAGAACAGGC
AAACTCAGAGCGGAATGGTACTAAGAACCAAGAATTAAAAAGTAATGAAA
GACGGGAGGTTTTGTCACCCATATCGCCCGATGTTGACGTGTCGCAAACG
AGGAAGCAGAATCGGACAGAATCTATATCAAAGCAACAAGTTGGTAGCTC
ACTACAGAGAGAAACTGACATCAACTATGCGGCCCAAGAGCAGTCCACAC
ATGACGACAATATTGGAGAAAGTGAGACTGACGGGTCTTCGCCATCTCTA
AACAGAACTCACCAGGTACCGAATGATAGCGGAGATAACCAGAAGTCCGT
GATTTCAAGCGAACAGAAAGAAATGATTGTGGATCGAGATGCTTATATCC
AAACAATTCCTAAGGATCACAGTTTTCTAACCGGACAGAATGACTCTGGG
AATCTTGTCAAAGACGAAGAACATGTAGCTGAACATTCTAGCAACAGAGT
ATATAGCACGAACCATGGTAATTACACCGAAGCTCCAGTAGGACAGTACA
GGCATCATGAAAGAGAATCAGAAAACACGCAGAAGCGCTCCGGAAGGTAT
ATTGGAATGGGCCGTGAAACACAATCTGTGGAGAAGCGGCAAGCTTCGGA
AATTAATGTACCCAAAAAGAAGGCAAGACTTCAAGTTAATCAGTACAATG
ACTTCAGAGAACATGACAGGTTTCAAACGGATGAATTTATCGCCCAGGCG
CAGGCCAATCAGCCATCAAGAGCAGATCCAATCCATACTTTGGGAATCGC
ACCTAGTATTGCTGATTCTGCTGCGGGATCTACATTTCACCCGCATGACC
AGCACAGAGGCTTTGAGTTTTCAAGCGGTCGGAGGTATGGCAAGAAACAG
ATTCTTTATTCGAGACGCCTAAATGGTAGCTCGAATTCGATACCGAAAAT
GGATCCGGGTAATGTGTCAGAATCTCATCGCAAGCGCATTGCGGAAAAGA
TTGCCCTTCAAGTTAAACGCGAGGTGCTTCTCAGGCGTCAACGGTCTGAT
AAGGTGGAAAAGAACGGAAGGCATCTTGTTGTACCTCCAAAAAAACGACT
AAAGTACTTGAAACCGAATCAATAG

Coding sequence (CDS) from alignment at ScGOVlb_88:2363108..2365282+

>Gvermi6811.t1 ID=Gvermi6811.t1|Name=Gvermi6811.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2175bp|location=Sequence derived from alignment at ScGOVlb_88:2363108..2365282+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACATTAATTCCCGCAAAGGTTTTCCCCCGCCGAACAAGAGCAACCT
TTATCGGTTACTCAAACGTTTTCGCAGTATCCTGGAACATAATCAGTTGG
CCATACGCCCCAGCCAGCCTAACAACGAAACAACCTTGCTCAAGGTTTGT
GAGAAGCTTTGTCACCGCAAAAAGCTTTGCGTTCGTCTTCTCAAGCTCTC
CGGTTTGTGTGTGATGCCTGAAGTCATGCAAACTCTGCACAGGTATAGGC
ATTTGAGAGTATATAGTTACAGGGAGTACATGAAGGCTGACGGAAGTATC
AAGCAAAATGGAGGCGTGCTCAATATTTCTTTCATTCCACCCTTCGTCGT
CTCCGACGACGCAGAGGAACAAGTTGCCATCGATAAGAATTCTCGATTAC
GGGCGGGGCTATGGAAAGAAGCGTCACGCTTTGATTGGGACTCCAGAAGT
CGCATCTTGCAACTTTTATTCATCATGGCGGCCTTCTCAGCTACTCTGAA
TGGTTGGATTGGAAGCTCTGAATGTTATTCACCCGCGTCGGCTATCGAAA
TATGGAAACGCTTCAGCGATCCGAGCTTCTGCACTGCAGCAATGCCTACT
GAGGAGGTAAGCAGTCCCCAAGATATCAGACAAGGATGGGAAACTGCTGT
GAAAGTGATCAAGGCCAACGTGGCTGAACTATATCACGACAAAGAGAAAC
CGATTCCACCAAGGTTGAGACGGTGGGGGCGCCAAACCGAATTCGCAGTG
CGCATCACGGACGTTCAGGAACGCACAGTGTTATGGTTTGGCCAACTCGT
GTCTGAGATGTGTGTGATGACACATGACCGTCTCGCCCAACAATCAGCTG
GCTTGAAAACCTTCCTAAAACCTTTGGCTGCACAAGCTGAAGCCTCGTTT
GTGGCTCTATTGGAAAGAGAAGTTGGTGTATCCCTCGATAAATTCAATTG
GAAGAGCGTATTTTCTGAAGAAAAGGCTCTTGAACTTCTTTCTCGCTGCC
AGTATTCAGTCAAAGTACTAAGGAAAATGCCGGAGGAATCTTCAGAGTCG
GCTATGCCACACAGCGACAGGGATGAAGACGAGAACATGGAAGAACAGGC
AAACTCAGAGCGGAATGGTACTAAGAACCAAGAATTAAAAAGTAATGAAA
GACGGGAGGTTTTGTCACCCATATCGCCCGATGTTGACGTGTCGCAAACG
AGGAAGCAGAATCGGACAGAATCTATATCAAAGCAACAAGTTGGTAGCTC
ACTACAGAGAGAAACTGACATCAACTATGCGGCCCAAGAGCAGTCCACAC
ATGACGACAATATTGGAGAAAGTGAGACTGACGGGTCTTCGCCATCTCTA
AACAGAACTCACCAGGTACCGAATGATAGCGGAGATAACCAGAAGTCCGT
GATTTCAAGCGAACAGAAAGAAATGATTGTGGATCGAGATGCTTATATCC
AAACAATTCCTAAGGATCACAGTTTTCTAACCGGACAGAATGACTCTGGG
AATCTTGTCAAAGACGAAGAACATGTAGCTGAACATTCTAGCAACAGAGT
ATATAGCACGAACCATGGTAATTACACCGAAGCTCCAGTAGGACAGTACA
GGCATCATGAAAGAGAATCAGAAAACACGCAGAAGCGCTCCGGAAGGTAT
ATTGGAATGGGCCGTGAAACACAATCTGTGGAGAAGCGGCAAGCTTCGGA
AATTAATGTACCCAAAAAGAAGGCAAGACTTCAAGTTAATCAGTACAATG
ACTTCAGAGAACATGACAGGTTTCAAACGGATGAATTTATCGCCCAGGCG
CAGGCCAATCAGCCATCAAGAGCAGATCCAATCCATACTTTGGGAATCGC
ACCTAGTATTGCTGATTCTGCTGCGGGATCTACATTTCACCCGCATGACC
AGCACAGAGGCTTTGAGTTTTCAAGCGGTCGGAGGTATGGCAAGAAACAG
ATTCTTTATTCGAGACGCCTAAATGGTAGCTCGAATTCGATACCGAAAAT
GGATCCGGGTAATGTGTCAGAATCTCATCGCAAGCGCATTGCGGAAAAGA
TTGCCCTTCAAGTTAAACGCGAGGTGCTTCTCAGGCGTCAACGGTCTGAT
AAGGTGGAAAAGAACGGAAGGCATCTTGTTGTACCTCCAAAAAAACGACT
AAAGTACTTGAAACCGAATCAATAG